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Finding cDNAs
UGID:257397     UniGene Mm.3990     Mus musculus (mouse)   Clpb Order cDNA clone, Links
ClpB caseinolytic peptidase B homolog (E. coli) (Clpb)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_033217.1 suppressor of K+ transport defect 3 M. musculus 100.0 676
NP_110440.1 caseinolytic peptidase B H. sapiens 94.5 706
XP_698885.2 PREDICTED: similar to ClpB caseinolytic peptidase B homolog (E. coli), partial D. rerio 85.2 405
NP_001084710.1 hypothetical protein LOC414672 X. laevis 75.2 124
NP_610503.1 ribosomal protein L31, isoform B D. melanogaster 59.2 120
NP_493391.1 Ribosomal Protein, Large subunit family member (rpl-31) C. elegans 52.6 114

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; testis; prostate; ovary; mammary gland; blood; bone; skin; mixed; kidney; uncharacterized tissue; bone marrow; spleen; extraembryonic tissue; eye; spinal cord; thymus; inner ear; pituitary gland; stomach; lung; pancreas; heart; liver; epididymis; dorsal root ganglion; oviduct; salivary gland; connective tissue; intestine; bladder; uterus; sympathetic ganglion
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7 F1
UniSTS entry: Chr 7 (n/a)
UniSTS entry: Chr 7 (n/a)
UniSTS entry: Chr 7 (n/a)
UniSTS entry: Chr 17 Rpl31
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (19)

AK032421.1 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430542E19 product:suppressor of K+ transport defect 3, full insert sequence P
AK054044.1 Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230014J10 product:PX00209J22, full insert sequence
AK028101.1 Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810017J14 product:suppressor of K+ transport defect 3, full insert sequence P
BC048175.1 Mus musculus ClpB caseinolytic peptidase B homolog (E. coli), mRNA (cDNA clone MGC:61172 IMAGE:6825472), complete cds PA
AK215195.1 Mus musculus cDNA, clone:Y2G0134E12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000001884, based on BLAT search P
AK212538.1 Mus musculus cDNA, clone:Y2G0125E18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000001884, based on BLAT search P
AK210937.1 Mus musculus cDNA, clone:Y2G0120C01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000001884, based on BLAT search
AK208238.1 Mus musculus cDNA, clone:Y2G0110I16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000001884, based on BLAT search
AK186387.1 Mus musculus cDNA, clone:Y0G0137C21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000001884, based on BLAT search P
AK177775.1 Mus musculus cDNA, clone:Y0G0104D06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000001884, based on BLAT search
AK145641.1 Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0025L19 product:suppressor of K+ transport defect 3, full insert sequence P
AK138593.1 Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330072F24 product:suppressor of K+ transport defect 3, full insert sequence P
AK141383.1 Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430045J16 product:suppressor of K+ transport defect 3, full insert sequence P
AK159314.1 Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420015I08 product:suppressor of K+ transport defect 3, full insert sequence P
AK147772.1 Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270031M24 product:suppressor of K+ transport defect 3, full insert sequence P
AK161996.1 Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720441C16 product:suppressor of K+ transport defect 3, full insert sequence P
AK154577.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630048M10 product:suppressor of K+ transport defect 3, full insert sequence P
U09874.1 Mus musculus SKD3 mRNA, complete cds P
NM_009191.3 Mus musculus ClpB caseinolytic peptidase B homolog (E. coli) (Clpb), mRNA P

EST sequences (10 of 352) [Show all sequences]

CA565440.1 Clone NIA:K0338B10_IMAGE:30057909 bone 5' read P
CA567235.1 Clone NIA:K0411E10_IMAGE:30060153 bone marrow 5' read P
CA567772.1 Clone NIA:K0418F01_IMAGE:30060828 bone marrow 5' read PM
BY000302.1 Clone 1020002K23 heart 5' read P
BY004976.1 Clone E860105G19 embryonic tissue 5' read P
BY007801.1 Clone G430046K13 mixed 5' read
BY031913.1 Clone I1C0009C11 embryonic tissue 5' read P
BY032697.1 Clone I1C0015A16 embryonic tissue 5' read P
BY034784.1 Clone I530015C07 mixed 5' read P
BY035942.1 Clone I530021L03 mixed 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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