R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 31 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|3264759|gb|AAC24583.1| (AF071889) 40S ribosomal protein S8 [Prunus
armeniaca]
Length = 221
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 787 (277.0 bits), Expect = 3.0e-77, P = 3.0e-77
Identities = 156/172 (90%), Positives = 162/172 (94%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDSMHKRRATGGKKKAWRK+RKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61 LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
Query: 430 EIGRKKKTAA-KKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
EIGRKKKTAA KK+T EEG A EEAKKSNH+ KLEKRQ+ R LDAHIEE
Sbjct: 121 EIGRKKKTAAAKKDTPEEGEATT--EEAKKSNHVAIKLEKRQQGRTLDAHIEE 171
>gi|6226702|sp|Q08069|RS8_MAIZE 40S RIBOSOMAL PROTEIN S8
>gi|7440237|pir||T04088 ribosomal protein S8 - maize
>gi|1498053|gb|AAB06330.1| (U64436) ribosomal protein S8 [Zea mays]
Length = 221
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
__________________
Annotated Domains:
PRODOM PD005658: RS8(7) RS8E(3) 9..110
PRODOM PD009322: RS8(7) 113..214
PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________
Plus Strand HSPs:
Score = 769 (270.7 bits), Expect = 2.4e-75, P = 2.4e-75
Identities = 150/173 (86%), Positives = 158/173 (91%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDSMHKRRATGGK+KAWRK+RKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 430 EIGRKKKT-AAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
+IGRKKKT AAKK+ AE A EE KKSNH+ RKLEKR++ R LD HIEE
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEE 173
>gi|1351014|sp|P49199|RS8_ORYSA 40S RIBOSOMAL PROTEIN S8
>gi|7440236|pir||T04082 probable ribosomal protein S8 - rice
>gi|968902|dbj|BAA07207.1| (D38010) ribosomal protein S8 [Oryza
sativa]
Length = 220
Frame 1 hits (HSPs): _______________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM01695: RATRIBOSOMALPROTEINS8 1..198
PFAM Ribosomal_S8e: Ribosomal protein S8e 3..128
PRODOM PD005658: RS8(7) RS8E(3) 9..110
PRODOM PD009322: RS8(7) 113..213
PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________
Plus Strand HSPs:
Score = 744 (261.9 bits), Expect = 1.1e-72, P = 1.1e-72
Identities = 146/172 (84%), Positives = 152/172 (88%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDSMHKRRATGGK+KAWRK+RKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 430 EIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
+IGRKKK A EEAKKSNH+ RKLEKRQ+ R LDAHIEE
Sbjct: 121 DIGRKKKEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEE 172
>gi|9759245|dbj|BAB09769.1| (AB016890) 40S ribosomal protein S8 [Arabidopsis
thaliana]
Length = 210
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 705 (248.2 bits), Expect = 1.5e-68, P = 1.5e-68
Identities = 141/172 (81%), Positives = 150/172 (87%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDS+HKRRATGGK+K WRK+RKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61 LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120
Query: 430 EIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
+IGRKKK AV EE KKSNH+QRKLE RQ+ R LD+H+EE
Sbjct: 121 DIGRKKK-----------GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEE 161
>gi|7440238|pir||T05908 probable ribosomal protein S8 - barley (fragment)
>gi|3355616|emb|CAA03954.1| (AJ000228) ribosomal protein S8
[Hordeum vulgare]
Length = 126
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 126
0 50 100
Plus Strand HSPs:
Score = 625 (220.0 bits), Expect = 4.4e-60, P = 4.4e-60
Identities = 117/126 (92%), Positives = 124/126 (98%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDSMHKRRATGGK+KAWRK+RKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LDTGN+SWGSEA TRKTR+LDVVYN+SNNELVRTQTLVK+AIVQVDAAPFKQWYL HYGV
Sbjct: 61 LDTGNFSWGSEATTRKTRLLDVVYNSSNNELVRTQTLVKNAIVQVDAAPFKQWYLTHYGV 120
Query: 430 EIGRKK 447
EIGRKK
Sbjct: 121 EIGRKK 126
>gi|4506743 ref|NP_001003.1| ribosomal protein S8 [Homo sapiens] >gi|6677813
ref|NP_033124.1| ribosomal protein S8 [Mus musculus]
>gi|134009|sp|P09058|RS8_HUMAN 40S RIBOSOMAL PROTEIN S8
>gi|70907|pir||R3RT8 ribosomal protein S8, cytosolic [validated] -
rat >gi|107619|pir||S25022 ribosomal protein S8, cytosolic - human
>gi|625511|pir||S42110 ribosomal protein S8 - mouse
>gi|36150|emb|CAA47670.1| (X67247) ribosomal protein S8 [Homo
sapiens] >gi|57139|emb|CAA29732.1| (X06423) ribosomal protein S8
(AA 1-208) [Rattus norvegicus] >gi|313298|emb|CAA52050.1| (X73829)
ribosomal protein S8 [Mus musculus]
Length = 208
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
Plus Strand HSPs:
Score = 497 (175.0 bits), Expect = 1.6e-46, P = 1.6e-46
Identities = 97/172 (56%), Positives = 127/172 (73%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRD+ HKRR TGGK+K + K+RKYELGR ANTK+ + + +RVRGGN K+RALR
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LD GN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY HY +
Sbjct: 60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
Query: 430 EIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
+GRKK AK EE + K+S +Q+K ++R+K+ K+ + +EE
Sbjct: 120 PLGRKK--GAKLTPEEE-----EILNKKRSKKIQKKYDERKKNAKISSLLEE 164
>gi|3396100|gb|AAC28863.1| (AF080430) ribosomal protein S8 [Apis mellifera]
Length = 207
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 473 (166.5 bits), Expect = 5.6e-44, P = 5.6e-44
Identities = 100/172 (58%), Positives = 123/172 (71%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRD HKRRATGGK+K RK+RK+ELGR ANTKL + + +R RGGN K +LR
Sbjct: 1 MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQR-IHTVRTRGGNKKL-SLR 58
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA PF+QWY HY +
Sbjct: 59 LDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVL 118
Query: 430 EIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
+GRK+ AK AEE V K+S + K + RQ+ K++ +EE
Sbjct: 119 PLGRKR--GAKLTEAEE-----EVLNKKRSKKAEAKYKARQRFAKVEPALEE 163
>gi|7529642|emb|CAB86469.1| (AL163481) 40s ribosomal protein s8
[Schizosaccharomyces pombe]
Length = 200
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 96/171 (56%), Positives = 121/171 (70%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGI+RDS HKR ATG K+ +RK+RK+ELGRQP+NT++ K + +RVRGGN K+RALR
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGP-KRIHEVRVRGGNKKFRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LD+GN+SWGSE V++KTRI+ V Y+ SNNELVRT TL KSAIVQ+DAAPF+ WY HYG+
Sbjct: 60 LDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGI 119
Query: 430 EIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIE 582
+G K KK TA KS H+QRK R D K+D+ +E
Sbjct: 120 LMGSK----GKKATATP---------TPKSKHVQRKHSARLGDSKVDSALE 157
>gi|7301850|gb|AAF56959.1| (AE003771) CG7808 gene product [Drosophila
melanogaster]
Length = 219
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 468 (164.7 bits), Expect = 1.9e-43, P = 1.9e-43
Identities = 99/175 (56%), Positives = 129/175 (73%), Frame = +1
Query: 61 PAN-MGI--SRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNV 231
PAN M + +RDS HKRRATGGK+K+ RK+RK+ELGR ANTKL S + V ++R RGGN
Sbjct: 6 PANTMKVRTNRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGR-VHKVRTRGGNT 64
Query: 232 KWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWY 411
K RALRL+TGN++W SE V RKTRI DVVYNASNNELVRT+TLVK++IV +DA PF+QWY
Sbjct: 65 KLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWY 124
Query: 412 LQHYGVEIGRKKKTA-AKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
HY + +GRK+ A+KE + V K+S + +K +RQK K++ +E+
Sbjct: 125 EAHYVLPLGRKRNPKHAQKEDEND------VLTKKRSEKVMKKYLERQKYGKVEQALED 177
>gi|6094196|sp|O14049|RS8_SCHPO 40S RIBOSOMAL PROTEIN S8
>gi|7489959|pir||T38527 40s ribosomal protein - fission yeast
(Schizosaccharomyces pombe) >gi|2414627|emb|CAB16376.1| (Z99259)
40s ribosomal protein s8. [Schizosaccharomyces pombe]
Length = 200
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
PFAM Ribosomal_S8e: Ribosomal protein S8e 3..127
PRODOM PD005658: RS8(7) RS8E(3) 8..110
PRODOM PD009322: RS8(7) 112..199
PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________
Plus Strand HSPs:
Score = 466 (164.0 bits), Expect = 3.1e-43, P = 3.1e-43
Identities = 95/171 (55%), Positives = 121/171 (70%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGI+RDS HKR ATG K+ +RK+RK+ELGRQP+NT++ K + +RVRGGN K+RALR
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGP-KRIHEVRVRGGNKKFRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LD+GN+SWGSE V++KTRI+ V Y+ SNNELVRT TL KSAIVQ+DAAPF+ WY HYG+
Sbjct: 60 LDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGI 119
Query: 430 EIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIE 582
+G K KK T+ KS H+QRK R D K+D+ +E
Sbjct: 120 LMGSK----GKKATSTPNP---------KSKHVQRKHSARLGDSKVDSALE 157
>gi|1351011|sp|P48156|RS8_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S8
>gi|7440242|pir||T16343 hypothetical protein F42C5.8 -
Caenorhabditis elegans >gi|1065942|gb|AAA81485.1| (U40799) coded
for by C. elegans cDNA yk51c6.5; coded for by C. elegans cDNA
yk107e3.5; coded for by C. elegans cDNA yk103h6.5; coded for by C.
elegans cDNA yk55e5.5; coded for by C. elegans cDNA yk78a4.5; coded
for by C. elegans cDNA yk107e3.3; coded >
Length = 208
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM01695: RATRIBOSOMALPROTEINS8 1..190
PFAM Ribosomal_S8e: Ribosomal protein S8e 3..127
PRODOM PD005658: RS8(7) RS8E(3) 9..109
PRODOM PD009322: RS8(7) 112..205
PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________
Plus Strand HSPs:
Score = 456 (160.5 bits), Expect = 3.5e-42, P = 3.5e-42
Identities = 93/172 (54%), Positives = 121/172 (70%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDS HKR TG + K+RK+ELGR ANTK+ +++ VR +R RGGN K+RALR
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHR-VRLVRTRGGNEKYRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LD+GN+SW SE TRKTRI+D +YNA+NNELVRT+TLVK AI+ VDAAPF+QWY HY +
Sbjct: 60 LDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYAL 119
Query: 430 EIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
+ RKK K + E+ A + K+S+H +K +RQK +DA + E
Sbjct: 120 PLARKKNA---KLSEEDNA----ILNKKRSHHTMKKYTERQKTAAVDALLIE 164
>gi|6319399 ref|NP_009481.1| Ribosomal protein S8A (S14A) (rp19) (YS9); Rps8ap
[Saccharomyces cerevisiae] >gi|6320949 ref|NP_011028.1| Ribosomal
protein S8B (S14B) (rp19) (YS9); Rps8bp [Saccharomyces cerevisiae]
>gi|464725|sp|P05754|RS8_YEAST 40S RIBOSOMAL PROTEIN S8 (S14) (YS9)
(RP19) >gi|625512|pir||S45591 ribosomal protein S8.e, cytosolic -
yeast (Saccharomyces cerevisiae) >gi|407523|emb|CAA81525.1|
(Z26879) ribosomal protein S8 [Saccharomyces cerevisiae]
>gi|536115|emb|CAA84893.1| (Z35833) ORF YBL072c [Saccharomyces
cerevisiae] >gi|603340|gb|AAB64657.1| (U18839) Rps8bp: Ribosome
protein, small subunit [Saccharomyces cerevisiae]
Length = 200
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 453 (159.5 bits), Expect = 7.3e-42, P = 7.3e-42
Identities = 89/155 (57%), Positives = 115/155 (74%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDS HKR ATG K+ +RK+RK+ELGRQPANTK+ + K + +R RGGN K+RALR
Sbjct: 1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
++TGN+SW SE +++KTRI VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+ HYG
Sbjct: 60 IETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQ 119
Query: 430 EIGRKK-----KTAAKKETAEEGAAAVAVEEAKKSN 522
+G+KK +T AK + AE AA A +S+
Sbjct: 120 TLGKKKNVKEEETVAKSKNAERKWAARAASAKIESS 155
Score = 451 (158.8 bits), Expect = 1.2e-41, P = 1.2e-41
Identities = 92/171 (53%), Positives = 120/171 (70%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDS HKR ATG K+ +RK+RK+ELGRQPANTK+ + K + +R RGGN K+RALR
Sbjct: 1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
++TGN+SW SE +++KTRI VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+ HYG
Sbjct: 60 IETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQ 119
Query: 430 EIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIE 582
+G+KK KE EE A KS + +RK R K+++ +E
Sbjct: 120 TLGKKKNV---KE--EETVA--------KSKNAERKWAARAASAKIESSVE 157
>gi|3777552|gb|AAC64931.1| (AF078069) 40S ribosomal protein S8 [Griffithsia
japonica]
Length = 204
Frame 1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 450 (158.4 bits), Expect = 1.5e-41, P = 1.5e-41
Identities = 86/126 (68%), Positives = 103/126 (81%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDS HKRR TGGK K+RKYELGRQPA TK+ K VR +RVRGGN+K RALR
Sbjct: 1 MGISRDSRHKRRLTGGKHPYTCKKRKYELGRQPAMTKIGG-KLVRTVRVRGGNLKSRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
L++GN++WGSEA T K+RIL+VVYNASNNELVRT T VK I+Q+DA PF+Q+Y HYG+
Sbjct: 60 LESGNFAWGSEAFTSKSRILNVVYNASNNELVRTNTFVKGCIIQIDATPFRQYYHNHYGI 119
Query: 430 EIGRKK 447
+IG+KK
Sbjct: 120 DIGKKK 125
>gi|134017|sp|P25204|RS8_LEIMA 40S RIBOSOMAL PROTEIN S8 >gi|102061|pir||S20063
ribosomal protein S8 (upstream gene) - Leishmania major
>gi|283415|pir||S20064 ribosomal protein S8.e, cytosolic -
Leishmania major >gi|9578|emb|CAA44714.1| (X62942) homologous to
rat ribosomal protein S8 [Leishmania major]
>gi|9579|emb|CAA44715.1| (X62942) homologous to rat ribosomal
protein S8 [Leishmania major]
Length = 220
Frame 1 hits (HSPs): _________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM01695: RATRIBOSOMALPROTEINS8 1..203
PFAM Ribosomal_S8e: Ribosomal protein S8e 3..127
PRODOM PD005658: RS8(7) RS8E(3) 9..109
PRODOM PD009322: RS8(7) 112..218
PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________
Plus Strand HSPs:
Score = 447 (157.4 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 92/177 (51%), Positives = 126/177 (71%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGI R +HKR+ TGGK K RKR K ELGR PANT+L + + V +R RGGN K RALR
Sbjct: 1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARR-VSPVRARGGNFKIRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LDTGN++W SEA+ + R+LDVVYNA++NELVRT+TLVK+ IV VDAAPFK+WY +HYG+
Sbjct: 60 LDTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGI 119
Query: 430 EIGRKKKT-----AAKKETAEEG-AAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
++ KK+ AA+K+ + AAA + K S LQR+ +R+++ +++ I +
Sbjct: 120 DLDADKKSTKAAVAAEKKGRKSAHAAADKYDVNKASPKLQREWTRRRRNHRVEKAIAD 177
>gi|321100|pir||A60687 6-1E protein - human
Length = 128
Frame 1 hits (HSPs): _______________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 128
0 50 100
__________________
Annotated Domains:
DOMO DM01695: RATRIBOSOMALPROTEINS8 1..129
PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________
Plus Strand HSPs:
Score = 437 (153.8 bits), Expect = 3.6e-40, P = 3.6e-40
Identities = 80/120 (66%), Positives = 98/120 (81%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRD+ HKRR TGGK+K + K+RKYELGR ANTK+ + + +RVRGGN K+RALR
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRR-IHTVRVRGGNKKYRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LD GN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY HY +
Sbjct: 60 LDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
>gi|11276556|pir||T49800 probable ribosomal protein Rps8bp [imported] -
Neurospora crassa >gi|8218279|emb|CAB92705.1| (AL356834) probable
ribosomal protein Rps8bp [Neurospora crassa]
Length = 202
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 434 (152.8 bits), Expect = 7.6e-40, P = 7.6e-40
Identities = 89/172 (51%), Positives = 120/172 (69%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRDS HKR TG K+ A K+R +E GRQPANT++ + K + +R RGGN K+RALR
Sbjct: 1 MGISRDSRHKRSHTGAKRAAAGKKRAFEAGRQPANTRIGA-KRIHTVRTRGGNHKYRALR 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 429
LD+GN++W SE TRKTR++ V Y+ SNNELVRT TL KSA+VQ+DAAPF+QWY HYG
Sbjct: 60 LDSGNFAWASEGCTRKTRVIVVAYHPSNNELVRTNTLTKSAVVQIDAAPFRQWYEAHYGQ 119
Query: 430 EIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKR-QKDRKLDAHIEE 585
+GR+++ ++G VEE KKS +++K +R K+D +E+
Sbjct: 120 PLGRRRQQ-------KQGQV---VEEVKKSKSVEKKQAERFAAAGKVDPALEK 162
>gi|3806118|gb|AAC69196.1| (AF097201) 40S ribosomal protein S8 [Schizophyllum
commune]
Length = 149
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
Plus Strand HSPs:
Score = 300 (105.6 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 62/108 (57%), Positives = 76/108 (70%), Frame = +1
Query: 259 GNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIG 438
GN++WGSE VTRKTR++ VVYNASNNELVRT T VKSAIVQVDA PF+QWY HY +
Sbjct: 1 GNFAWGSEHVTRKTRLIGVVYNASNNELVRTNTFVKSAIVQVDATPFRQWYEAHYAQPVT 60
Query: 439 RKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIE 582
+K K + A A E+ K SNH+QRKL +R+KD K+D +E
Sbjct: 61 KKGK---------QHAPAPEAEDKKLSNHVQRKLTERKKDAKIDPLLE 99
>gi|12580733|emb|CAC27051.1| (AJ010592) 40S ribosomal protein S8 [Guillardia
theta]
Length = 178
Frame 1 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
Plus Strand HSPs:
Score = 286 (100.7 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 58/108 (53%), Positives = 77/108 (71%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGI+R+ +HKR++TGG K WRK+R + GRQP+NTK+ + V ++RVRGG VK RAL
Sbjct: 1 MGINREGLHKRKSTGGLKSCWRKKRNHAKGRQPSNTKIG-RRCVVKLRVRGGGVKTRALF 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAA 393
L GN+S+ S T K +IL V +N S+NELVRT TL K +IV +D A
Sbjct: 60 LSYGNFSFVSIQRTFKAKILSVAFNESSNELVRTNTLTKGSIVYLDIA 107
>gi|1245435|gb|AAA93474.1| (U50471) putative ribosomal protein S8 [Anopheles
gambiae]
Length = 135
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 135
0 50 100
Plus Strand HSPs:
Score = 235 (82.7 bits), Expect = 9.3e-19, P = 9.3e-19
Identities = 50/100 (50%), Positives = 70/100 (70%), Frame = +1
Query: 286 VTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKK 465
+ RK RI+DVVYNASNNEL+RT+TLVK+AI+ +DA+PF+QWY HY + +G+K++ A +
Sbjct: 1 MARKARIIDVVYNASNNELIRTKTLVKNAIIVIDASPFRQWYESHYLLPLGKKRELKAGE 60
Query: 466 ETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
E V ++ KSN RK KRQK+ K+D +EE
Sbjct: 61 ED-------VLSKKRTKSN--LRKYVKRQKNAKIDPAVEE 91
>gi|171727|gb|AAA63573.1| (J05637) unknown gene; putative [Saccharomyces
cerevisiae]
Length = 131
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 131
0 50 100
Plus Strand HSPs:
Score = 208 (73.2 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 44/86 (51%), Positives = 58/86 (67%), Frame = +1
Query: 280 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKK---- 447
E +++KTRI VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+ HYG +G+KK
Sbjct: 1 EGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVKE 60
Query: 448 -KTAAKKETAEEGAAAVAVEEAKKSN 522
+T AK + AE AA A +S+
Sbjct: 61 EETVAKSKNAERKWAARAASAKIESS 86
Score = 206 (72.5 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 47/101 (46%), Positives = 63/101 (62%), Frame = +1
Query: 280 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAA 459
E +++KTRI VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+ HYG +G+KK
Sbjct: 1 EGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNV-- 58
Query: 460 KKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIE 582
KE EE A KS + +RK R K+++ +E
Sbjct: 59 -KE--EETVA--------KSKNAERKWAARAASAKIESSVE 88
>gi|7440235|pir||T03647 probable ribosomal protein S8 - maize (fragment)
>gi|12651627|gb|AAA18551.2| (M95064) putative. similar to ribosomal
protein S8 [Zea mays]
Length = 41
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 41
0 20 40
Plus Strand HSPs:
Score = 208 (73.2 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 39/41 (95%), Positives = 41/41 (100%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSN 192
MGISRDSMHKRRATGGK+KAWRK+RKYELGRQPANTKLSSN
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSN 41
>gi|12730992 ref|XP_011219.1| similar to ribosomal protein S8 (H. sapiens)
[Homo sapiens]
Length = 74
Frame 1 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | 74
0 20 40 60
Plus Strand HSPs:
Score = 197 (69.3 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 38/69 (55%), Positives = 50/69 (72%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MGISRD+ H+RR TGGK+K + K+RKYEL R ANTK+ + + +RV+G N K+RALR
Sbjct: 1 MGISRDNWHQRRKTGGKRKPYHKKRKYELERPAANTKIGPRR-IHTVRVQGSNKKYRALR 59
Query: 250 LDTGNYSWG 276
LD G + G
Sbjct: 60 LDVGEFLLG 68
>gi|9757234|emb|CAC02806.1| (AL390114) probable 40s ribosomal protein s8
[Leishmania major]
Length = 77
Frame 1 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 196 (69.0 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 36/64 (56%), Positives = 45/64 (70%), Frame = +1
Query: 238 RALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQ 417
R L DTGN++W SEA+ + R+LDVVYNA++NELVRT TLV DAAPFK+ Y
Sbjct: 9 RXLXXDTGNFAWASEAIAHRVRLLDVVYNATSNELVRTXTLVXXCXXAXDAAPFKRXYAX 68
Query: 418 HYGV 429
HY +
Sbjct: 69 HYXI 72
>gi|283414|pir||S24182 ribosomal protein S8 - Leishmania major
Length = 96
Frame 1 hits (HSPs): ___________________________________________
Annotated Domains: ___________
__________________________________________________
Database sequence: | | | | | | 96
0 20 40 60 80
__________________
Annotated Domains:
PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 11..30
__________________
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 37/84 (44%), Positives = 48/84 (57%), Frame = +1
Query: 70 MGISRDSMHKRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 249
MG+ R +HKR+ TGGK K RKR K ELGR PANT+L + V +R RGGN++
Sbjct: 1 MGMVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGPRR-VTPVRARGGNLRSVPCA 59
Query: 250 LDTGNYSWGSEAVTRKTRILDVVY 321
G + + R+LDVVY
Sbjct: 60 WTPATLP-GLRGIAHRVRLLDVVY 82
>gi|1710777|sp|P54055|RS8E_METJA 30S RIBOSOMAL PROTEIN S8E
>gi|2129274|pir||A64384 ribosomal protein S8.eR - Methanococcus
jannaschii >gi|1591387|gb|AAB98667.1| (U67514) SSU ribosomal
protein S8E [Methanococcus jannaschii]
Length = 129
Frame 1 hits (HSPs): ______________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 129
0 50 100
__________________
Annotated Domains:
BLOCKS BL01193A: Ribosomal protein S8e proteins 8..38
BLOCKS BL01193B: Ribosomal protein S8e proteins 43..80
BLOCKS BL01193C: Ribosomal protein S8e proteins 110..128
DOMO DM01695: RATRIBOSOMALPROTEINS8 1..127
PFAM Ribosomal_S8e: Ribosomal protein S8e 2..128
PRODOM PD005658: RS8(7) RS8E(3) 5..127
PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 10..29
__________________
Plus Strand HSPs:
Score = 160 (56.3 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 32/98 (32%), Positives = 55/98 (56%), Frame = +1
Query: 97 KRRATGGKKKAWRKRRKYELGRQPANTKLSSNK-TVRRIRVRGGNVKWRALRLDTGNYSW 273
+R+ TGG + RK+RKYE+GR+P T ++ ++++R RGGN+K + +R N
Sbjct: 9 RRKPTGGLYRPARKKRKYEMGREPIETHVAEEAFKIKKVRTRGGNLKVKVVRTGFANVLD 68
Query: 274 GSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVD 387
+K +I+ V N +N VR + K AI++ +
Sbjct: 69 PETGTCKKVKIITVRENKANIHYVRRNVITKGAIIETE 106
>gi|10640354|emb|CAC12168.1| (AL445066) probable 30S ribosomal protein S8
[Thermoplasma acidophilum]
Length = 127
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Plus Strand HSPs:
Score = 157 (55.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 36/96 (37%), Positives = 55/96 (57%), Frame = +1
Query: 100 RRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRR-IRVRGGNVKWRALRLDTGNYSWG 276
++ATGG K RK+R++ELGR+P TKL + KT R+ IR GGN K +T N
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGT-KTERKVIRTMGGNTKVILFTAETANVYDA 68
Query: 277 SEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVD 387
SE +K +I+ V N +N+ V+ + K ++ +
Sbjct: 69 SEKKIKKAKIITVKANPANSHYVQRNIINKGTVIATE 105
>gi|3914929|sp|O26309|RS8E_METTH 30S RIBOSOMAL PROTEIN S8E
>gi|7440241|pir||D69125 ribosomal protein S8 - Methanobacterium
thermoautotrophicum (strain Delta H) >gi|2621252|gb|AAB84713.1|
(AE000807) ribosomal protein S8 [Methanothermobacter
thermautotrophicus]
Length = 127
Frame 1 hits (HSPs): ______________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 127
0 50 100
__________________
Annotated Domains:
PFAM Ribosomal_S8e: Ribosomal protein S8e 2..126
PRODOM PD005658: RS8(7) RS8E(3) 5..124
__________________
Plus Strand HSPs:
Score = 151 (53.2 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 38/96 (39%), Positives = 53/96 (55%), Frame = +1
Query: 100 RRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTG-NYSWG 276
++ +GG+ K R +RKYELGR+PA TK+ + VR IR RGGN K R L DT N
Sbjct: 10 KKPSGGRAKMNRGKRKYELGREPAETKIGDRR-VRLIRTRGGNTKVR-LASDTRINVVDP 67
Query: 277 SEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVD 387
I +VV N +N VR + + A+V+ +
Sbjct: 68 ETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETN 104
>gi|7440244|pir||F75092 ssu ribosomal protein s8e (rps8e) PAB0749 - Pyrococcus
abyssi (strain Orsay) >gi|5458555|emb|CAB50043.1| (AJ248286) SSU
ribosomal protein S8E (rps8E) [Pyrococcus abyssi]
Length = 127
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Plus Strand HSPs:
Score = 150 (52.8 bits), Expect = 9.4e-10, P = 9.4e-10
Identities = 35/101 (34%), Positives = 56/101 (55%), Frame = +1
Query: 100 RRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYS--W 273
R+ +GG+ RK+RK ELGR+P+NT+++ + IR GGN K +RL Y+ +
Sbjct: 10 RKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNKK---VRLTAAAYANVF 66
Query: 274 GSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFK 402
RK RI+ V+ N +N + R + K AI++ + K
Sbjct: 67 DKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAK 109
>gi|6647807|sp|O58830|RS8E_PYRHO 30S RIBOSOMAL PROTEIN S8E
>gi|7440239|pir||H71050 probable ribosomal protein S8 - Pyrococcus
horikoshii >gi|3257519|dbj|BAA30202.1| (AP000005) 127aa long
hypothetical 30S ribosomal protein S8 [Pyrococcus horikoshii]
Length = 127
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 34/101 (33%), Positives = 56/101 (55%), Frame = +1
Query: 100 RRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYS--W 273
++ +GG+ RK+RK ELGR+P+NT+++ + IR GGN R +RL Y+ +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGN---RKVRLTAAAYANVF 66
Query: 274 GSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFK 402
RK RI+ V+ N +N + R + K AI++ + K
Sbjct: 67 DKSGKGRKVRIIRVLENPANRQFARRNIITKGAIIETEIGKAK 109
>gi|6685953|sp|Q9YDY0|RS8E_AERPE 30S RIBOSOMAL PROTEIN S8E
>gi|7440243|pir||G72670 probable ribosomal protein S8 APE0789 -
Aeropyrum pernix (strain K1) >gi|5104452|dbj|BAA79767.1|
(AP000060) 136aa long hypothetical 30S ribosomal protein S8
[Aeropyrum pernix]
Length = 136
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 136
0 50 100
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 33/97 (34%), Positives = 53/97 (54%), Frame = +1
Query: 97 KRRATGGKKKAWRK-RRKYELGRQPANTKLSSNKTVRR--IRVRGGNVKWRALRLDTGNY 267
K++ +GGK++ + K +RKY GR P T LS+ + R +R RGG+ K +A ++
Sbjct: 9 KKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKIKAKKVAFAVV 68
Query: 268 SWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIV 378
S RK RIL +V ++ E R +VK A++
Sbjct: 69 SNPKTGEARKARILRIVETPAHREYARRGIIVKGAVI 105
>gi|11499735 ref|NP_070977.1| SSU ribosomal protein S8E (rps8E) [Archaeoglobus
fulgidus] >gi|3914931|sp|O28130|RS8E_ARCFU 30S RIBOSOMAL PROTEIN
S8E >gi|7440240|pir||H69518 SSU ribosomal protein S8E (rps8E)
homolog - Archaeoglobus fulgidus >gi|2648378|gb|AAB89103.1|
(AE000956) SSU ribosomal protein S8E (rps8E) [Archaeoglobus
fulgidus]
Length = 125
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 125
0 50 100
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 32/94 (34%), Positives = 48/94 (51%), Frame = +1
Query: 97 KRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWG 276
+R+ +GG + RK+RKYELGR+ T + K V++IRVRGGN K + N
Sbjct: 8 RRKPSGGFYRKARKKRKYELGREQVETLIGERK-VKKIRVRGGNYKLKLFADKYANVYDP 66
Query: 277 SEAVTRKTRILDVVYNASNNELVRTQTLVKSAIV 378
+ + I VV N ++ R + K AI+
Sbjct: 67 KQGKVVRVEIESVVENPAHVHYARRNVITKGAII 100
>gi|1350966|sp|P49402|RS8E_HALMA 30S RIBOSOMAL PROTEIN S8E (HS23)
>gi|629389|pir||S49022 ribosomal protein S8.eR [validated] -
Haloarcula marismortui
Length = 123
Frame 1 hits (HSPs): _____________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 123
0 50 100
__________________
Annotated Domains:
DOMO DM01695: RATRIBOSOMALPROTEINS8 1..122
PRODOM PD005658: RS8(7) RS8E(3) 4..122
PROSITE RIBOSOMAL_S8E: Ribosomal protein S8e sig 9..28
__________________
Plus Strand HSPs:
Score = 127 (44.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 28/94 (29%), Positives = 53/94 (56%), Frame = +1
Query: 100 RRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGS 279
R+ TGG+++ K++K+ELG+ T++ + ++ + RG K RA++ D + + G+
Sbjct: 9 RKRTGGRRRPNHKKKKHELGKDTVETQVGEQR-LKTVDSRGNTQKVRAVKTDVASIADGA 67
Query: 280 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQ 381
E + + I +VV N SN R + K AI++
Sbjct: 68 ETI--EATIENVVENPSNPNYARRNIITKGAILE 99
>gi|10581140|gb|AAG19920.1| (AE005076) 30S ribosomal protein S8E; Rps8e
[Halobacterium sp. NRC-1]
Length = 124
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | 124
0 50 100
Plus Strand HSPs:
Score = 118 (41.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 35/98 (35%), Positives = 48/98 (48%), Frame = +1
Query: 97 KRRATGGKKKAWRKRRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWG 276
KR TG + + K+ K ELGR+P T + + R + VRG K R L + N +
Sbjct: 8 KRSKTGARLRPRSKKSKSELGREPTETTVGEPR-FRTVDVRGDAEKVRVLSTNVVNVATD 66
Query: 277 SEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 390
S A R T I DV N +N R + K AI++ DA
Sbjct: 67 SGA-ERAT-IEDVSANDANPNYARRNIITKGAIIETDA 102
>gi|12655382|emb|CAC27563.1| (AJ296168) keratin associated protein [Homo
sapiens]
Length = 106
Frame 3 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.022, P = 0.022
Identities = 20/63 (31%), Positives = 24/63 (38%), Frame = +3
Query: 312 CGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCC- 488
CG C Q C + C+ YC CC PS C C+ C+ CC
Sbjct: 6 CGSVCSDQ-GCGLENCCRPSYCQTTCCRTTCCRPSC--C-----RPSCCRPQCCQSVCCQ 57
Query: 489 -CCCC 500
CCC
Sbjct: 58 PTCCC 62
Score = 78 (27.5 bits), Expect = 0.10, P = 0.098
Identities = 21/67 (31%), Positives = 24/67 (35%), Frame = +3
Query: 306 TRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGC 485
T C C + C S C+ C CC PS +C CQ CR C
Sbjct: 29 TCCRTTCCRPSCCRPS-CCRPQCCQSVCCQPTCCCPS--YCVSSCCRPQCCQTTRCRTTC 85
Query: 486 C--CCCCGR 506
C CC R
Sbjct: 86 CRPSCCVSR 94
Score = 72 (25.3 bits), Expect = 3.9, P = 0.98
Identities = 22/69 (31%), Positives = 25/69 (36%), Frame = +3
Query: 306 TRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGC 485
T C C + C S C+ C CC PS +C CQ CR C
Sbjct: 29 TCCRTTCCRPSCCRPS-CCRPQCCQSVCCQPTCCCPS--YCVSSCCRPQCCQTTRCRTTC 85
Query: 486 C---CCC--CGR 506
C CC C R
Sbjct: 86 CRPSCCVSRCYR 97
>gi|7507486|pir||T24715 hypothetical protein T08G5.10 - Caenorhabditis elegans
Length = 74
Frame 3 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | | 74
0 20 40 60
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.036, P = 0.036
Identities = 22/67 (32%), Positives = 29/67 (43%), Frame = +3
Query: 312 CGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCCC 491
C C K + C+ + K C CS C Q P+A E+ C+ G C GGC C
Sbjct: 14 CKCDC-KNQNCSCNTGTKDCDCSDAKCCEQYCCPTA-------SEKKCCKSG-CAGGCKC 64
Query: 492 CCCGRSQ 512
C +Q
Sbjct: 65 ANCECAQ 71
Score = 82 (28.9 bits), Expect = 0.036, P = 0.036
Identities = 23/73 (31%), Positives = 33/73 (45%), Frame = +3
Query: 294 QDSYTRCGLQC-LKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGN 470
Q Y++ +C K + C+ + K C CS C Q P+A E+ C+ G
Sbjct: 6 QRLYSKMVCKCDCKNQNCSCNTGTKDCDCSDAKCCEQYCCPTA-------SEKKCCKSG- 57
Query: 471 CRGGCCCCCCGRSQ 512
C GGC C C +Q
Sbjct: 58 CAGGCKCANCECAQ 71
>gi|127391|sp|P17512|MT2_CAEEL METALLOTHIONEIN-II (MT-II) (METALLOTHIONEIN-LIKE
PROTEIN) (MT-CE) >gi|102531|pir||A34905 metallothionein 1 -
Caenorhabditis elegans >gi|6782|emb|CAA37335.1| (X53245)
metallothionein-II [Caenorhabditis elegans]
>gi|156368|gb|AAA28111.1| (M92910) metallothionein-2
[Caenorhabditis elegans] >gi|156381|gb|AAA28117.1| (M32386)
metallothionein-like protein [Caenorhabditis elegans]
>gi|156383|gb|AAA28118.1| (M32387) metallothionein-like protein
[Caenorhabditis elegans] >gi|435622|dbj|BAA04181.1| (D17365)
metallothionein-II [Caenorhabditis elegans]
>gi|6434328|emb|CAB61028.1| (Z81589) mtl-2 [Caenorhabditis elegans]
Length = 63
Frame 3 hits (HSPs): ______________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 63
0 20 40 60
__________________
Annotated Domains:
DOMO DM05180: 1..61
PRINTS MTNEMATODE1: Nematode metallothionein mo 1..13
PRINTS MTNEMATODE2: Nematode metallothionein mo 20..33
PRINTS MTNEMATODE3: Nematode metallothionein mo 33..46
PRINTS MTNEMATODE4: Nematode metallothionein mo 46..58
PRODOM PD053062: MT1(1) MT2(1) 2..58
PROSITE PA2_ASP: Phospholipase A2 aspartic acid 2..12
__________________
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.036, P = 0.036
Identities = 22/67 (32%), Positives = 29/67 (43%), Frame = +3
Query: 312 CGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCCC 491
C C K + C+ + K C CS C Q P+A E+ C+ G C GGC C
Sbjct: 3 CKCDC-KNQNCSCNTGTKDCDCSDAKCCEQYCCPTA-------SEKKCCKSG-CAGGCKC 53
Query: 492 CCCGRSQ 512
C +Q
Sbjct: 54 ANCECAQ 60
>gi|6449393|gb|AAF08966.1| (AF200420) copper-specific metallothionein CuMT-II
[Callinectes sapidus]
Length = 64
Frame 3 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.061, P = 0.060
Identities = 24/58 (41%), Positives = 26/58 (44%), Frame = +3
Query: 342 CAYSDSCK----KCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCCC---CCC 500
C SCK KC C G C+ T PS C SC +G C C C CCC
Sbjct: 3 CGCGTSCKCGSGKC-CCGSTCNC-TTCPSKQSC--------SCNDGACGSACQCKTSCCC 52
Query: 501 GRSQK 515
G K
Sbjct: 53 GADCK 57
>gi|12655454|emb|CAC27579.1| (AJ406940) keratin associated protein 4.8 [Homo
sapiens]
Length = 114
Frame 3 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | 114
0 50 100
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.19, P = 0.17
Identities = 22/74 (29%), Positives = 27/74 (36%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C + C + + +C S CK C CC PS C C+
Sbjct: 14 CQPTCCHPSCCISSCCRPSCCVSSCCKPQCCQSVCCQPTCCHPS---C----SISSCCRP 66
Query: 465 GNCRGGCC--CCC----CGR 506
C CC CCC CGR
Sbjct: 67 SCCESSCCRPCCCVRPVCGR 86
>gi|10121621|gb|AAG13290.1|AF266170_1 (AF266170) 40S ribosomal protein S8
[Gillichthys mirabilis]
Length = 96
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | | 96
0 20 40 60 80
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.29, P = 0.25
Identities = 21/59 (35%), Positives = 29/59 (49%), Frame = +1
Query: 409 YLQHYGVEIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
Y HY +GRKK AK EE V K+S Q+K ++R+K K+ +EE
Sbjct: 1 YEAHYATPLGRKK--GAKLTPEEE-----EVLNKKRSKKTQKKYDERKKTAKIXTXLEE 52
>gi|12655456|emb|CAC27580.1| (AJ406941) keratin associated protein 4.9 [Homo
sapiens]
Length = 191
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 191
0 50 100 150
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.31, P = 0.27
Identities = 23/74 (31%), Positives = 29/74 (39%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C + + RC + + +C S CK C CC PS C C+
Sbjct: 91 CETTCCHPRCCISSCCRPSCCVSSCCKPQCCQSVCCQPNCCRPS---C----SISSCCRP 143
Query: 465 GNCRGGCC--CCC----CGR 506
C CC CCC CGR
Sbjct: 144 SCCESSCCRPCCCVRPVCGR 163
>gi|12655446|emb|CAC27575.1| (AJ406936) keratin associated protein 4.4 [Homo
sapiens]
Length = 166
Frame 3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 166
0 50 100 150
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.35, P = 0.29
Identities = 23/66 (34%), Positives = 25/66 (37%), Frame = +3
Query: 312 CGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCC- 488
CG C Q C + C+ YC CC PS C CQ CR CC
Sbjct: 6 CGSVCSDQ-GCGLENCCRPSYCQTTCCRTTCCRPSC--CVSSCCRPQCCQTTCCRTTCCH 62
Query: 489 --CC---CC 500
CC CC
Sbjct: 63 PSCCVSSCC 71
Score = 88 (31.0 bits), Expect = 0.35, P = 0.29
Identities = 25/69 (36%), Positives = 27/69 (39%), Frame = +3
Query: 312 CGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCC- 488
CG C Q C + C+ YC CC PS C CQ CR CC
Sbjct: 6 CGSVCSDQ-GCGLENCCRPSYCQTTCCRTTCCRPSC--CVSSCCRPQCCQTTCCRTTCCH 62
Query: 489 --CC---CCGRSQ 512
CC CC R Q
Sbjct: 63 PSCCVSSCC-RPQ 74
>gi|12655444|emb|CAC27574.1| (AJ406935) keratin associated protein 4.3 [Homo
sapiens]
Length = 98
Frame 3 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 98
0 20 40 60 80
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.38, P = 0.32
Identities = 21/63 (33%), Positives = 24/63 (38%), Frame = +3
Query: 312 CGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCC- 488
C C + +C S CK C CC + S C CQ CR CC
Sbjct: 8 CISSCCRP-SCCISSCCKPSCCQTTCCRPSCCISS---C----YRPQCCQPSCCRPACCI 59
Query: 489 --CC---CC 500
CC CC
Sbjct: 60 SSCCHPSCC 68
>gi|72165|pir||SMHO1A metallothionein 1A - horse
Length = 60
Frame 3 hits (HSPs): __________________ ________________
Annotated Domains: _ _ _ __________________ __ _ _ __ _ _
__________________________________________________
Database sequence: | | | | 60
0 20 40
__________________
Annotated Domains:
Entrez modified site: acetylated amino end (Met 1
Entrez binding site: transition metal ions (Cys 5
Entrez binding site: transition metal ions (Cys 7
Entrez binding site: transition metal ions (Cys 13
Entrez binding site: transition metal ions (Cys 15
Entrez binding site: transition metal ions (Cys 19
Entrez binding site: transition metal ions (Cys 21
Entrez binding site: transition metal ions (Cys 24
Entrez binding site: transition metal ions (Cys 26
Entrez binding site: transition metal ions (Cys 29
Entrez binding site: transition metal ions (Cys 33
Entrez binding site: transition metal ions (Cys 34
Entrez binding site: transition metal ions (Cys 36
Entrez binding site: transition metal ions (Cys 37
Entrez binding site: transition metal ions (Cys 41
Entrez binding site: transition metal ions (Cys 44
Entrez binding site: transition metal ions (Cys 48
Entrez binding site: transition metal ions (Cys 50
Entrez binding site: transition metal ions (Cys 57
Entrez binding site: transition metal ions (Cys 59
PROSITE METALLOTHIONEIN_VRT: Vertebrate metallot 13..31
__________________
Plus Strand HSPs:
Score = 48 (16.9 bits), Expect = 0.39, Sum P(2) = 0.32
Identities = 10/21 (47%), Positives = 12/21 (57%), Frame = +3
Query: 342 CAYSDSCKKCYCSG*---CCS 395
CA S CK+C C+ CCS
Sbjct: 15 CAGSCKCKECRCTSCKKSCCS 35
Score = 41 (14.4 bits), Expect = 0.39, Sum P(2) = 0.32
Identities = 10/20 (50%), Positives = 10/20 (50%), Frame = +3
Query: 471 CRGGC--C---CCCCGRSQK 515
C GGC C C C G S K
Sbjct: 37 CPGGCARCAQGCVCKGASDK 56
>gi|10121766|gb|AAG13362.1|AF266243_1 (AF266243) ribosomal protein S8
[Gillichthys mirabilis]
Length = 95
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | 95
0 20 40 60 80
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 0.49, P = 0.39
Identities = 20/56 (35%), Positives = 28/56 (50%), Frame = +1
Query: 418 HYGVEIGRKKKTAAKKETAEEGAAAVAVEEAKKSNHLQRKLEKRQKDRKLDAHIEE 585
HY +GRKK AK EE V K+S Q+K ++R+K K+ +EE
Sbjct: 3 HYATXLGRKK--GAKLTPEEE-----EVLNKKRSKKTQKKYDERKKTAKISTFLEE 51
>gi|7657285 ref|NP_056624.1| keratin-associated protein 5-4 [Mus musculus]
>gi|91872|pir||B38346 ultra-high-sulfur keratin 2 - mouse
>gi|200964|gb|AAA40107.1| (M37760) serine 2 ultra high sulfur
protein [Mus musculus]
Length = 223
Frame 3 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 223
0 50 100 150 200
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.78, P = 0.54
Identities = 22/71 (30%), Positives = 28/71 (39%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C+S + C C K C S CK C C CC + S C + C+
Sbjct: 122 CSSGCGSSCCQSSCCKP-CCCQSSCCKPCCCQSSCC--KPCCSSG--CGSSCCQSSCCKP 176
Query: 465 GNCRGGCC--CCC 497
C+ CC CCC
Sbjct: 177 CCCQSSCCKPCCC 189
Score = 81 (28.5 bits), Expect = 5.4, P = 1.0
Identities = 22/71 (30%), Positives = 25/71 (35%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C+S + C C K C S CK C C CC P C C
Sbjct: 122 CSSGCGSSCCQSSCCKP-CCCQSSCCKPCCCQSSCCK-----PC---C------SSGCGS 166
Query: 465 GNCRGGCC--CCC 497
C+ CC CCC
Sbjct: 167 SCCQSSCCKPCCC 179
Score = 80 (28.2 bits), Expect = 7.0, P = 1.0
Identities = 22/72 (30%), Positives = 27/72 (37%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C+S + C C K C S CK C C CC P C + C+
Sbjct: 160 CSSGCGSSCCQSSCCKP-CCCQSSCCKPCCCQSSCCK-----PCC--C-----QSSCCKP 206
Query: 465 GNCRGGCC---CCCC 500
C+ CC CC C
Sbjct: 207 CCCQSSCCAPVCCQC 221
Score = 79 (27.8 bits), Expect = 9.1, P = 1.0
Identities = 21/71 (29%), Positives = 26/71 (36%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C S C C +C S CK C C CC + S C + C+
Sbjct: 85 CQSSCCKPCCSSGC--GSSCCQSSCCKPCCCQSSCC--KPCCSSG--CGSSCCQSSCCKP 138
Query: 465 GNCRGGCC--CCC 497
C+ CC CCC
Sbjct: 139 CCCQSSCCKPCCC 151
Score = 79 (27.8 bits), Expect = 9.1, P = 1.0
Identities = 22/78 (28%), Positives = 29/78 (37%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCS--IQTVVPSALW----C*DW*EE 446
C+S + C C K C S CK C C CC + S+ C +
Sbjct: 122 CSSGCGSSCCQSSCCKP-CCCQSSCCKPCCCQSSCCKPCCSSGCGSSCCQSSCCKPCCCQ 180
Query: 447 EDSCQEGNCRGGCC--CCC 497
C+ C+ CC CCC
Sbjct: 181 SSCCKPCCCQSSCCKPCCC 199
>gi|127374|sp|P17511|MT1_CAEEL METALLOTHIONEIN-I (MT-I) >gi|345367|pir||B45206
metallothionein 2 - Caenorhabditis elegans >gi|6780|emb|CAA37334.1|
(X53244) metallothionein-I [Caenorhabditis elegans]
>gi|156366|gb|AAA28110.1| (M92909) metallothionein I
[Caenorhabditis elegans] >gi|435621|dbj|BAA04180.1| (D17364)
metallothionein-I [Caenorhabditis elegans]
>gi|1465815|gb|AAB04979.1| (U64853) coded for by C. elegans cDNA
yk120h8.5; coded for by C. elegans cDNA yk120h8.3; cysteine-rich
[Caenorhabditis elegans]
Length = 75
Frame 3 hits (HSPs): _______________________________________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | 75
0 20 40 60
__________________
Annotated Domains:
DOMO DM05180: 1..59
PRINTS MTNEMATODE1: Nematode metallothionein mo 1..13
PRINTS MTNEMATODE2: Nematode metallothionein mo 17..30
PRINTS MTNEMATODE3: Nematode metallothionein mo 30..43
PRINTS MTNEMATODE4: Nematode metallothionein mo 43..55
PRODOM PD053062: MT1(1) MT2(1) 2..55
PROSITE PA2_ASP: Phospholipase A2 aspartic acid 2..12
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.82, P = 0.56
Identities = 24/69 (34%), Positives = 30/69 (43%), Frame = +3
Query: 312 CGLQCLKQRACAYSDSCKKCYCSG*-CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCC 488
C C K + C D KC CSG CC +C + E+ C G C+G C
Sbjct: 3 CKCDC-KNKQCKCGD---KCECSGDKCCE--------KYCCEEASEKKCCPAG-CKGDCK 49
Query: 489 C--CCCGRSQKE 518
C C C QK+
Sbjct: 50 CANCHCAE-QKQ 60
>gi|1289211|emb|CAA65928.1| (X97273) metallothionein A [Cyprinodon sp.]
Length = 60
Frame 3 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 60
0 20 40
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.82, P = 0.56
Identities = 15/40 (37%), Positives = 21/40 (52%), Frame = +3
Query: 273 GK*SCNSQDSYTRCGLQCLKQRACAYSDS-CKKCYCSG*CC 392
GK +C + + T C +C K+ C+ S C KC SG C
Sbjct: 10 GKCNCGTSCTCTNCSCKCCKKSCCSCCPSGCSKC-ASGCVC 49
>gi|7657283 ref|NP_056623.1| keratin-associated protein 5-1 [Mus musculus]
>gi|111230|pir||A38346 ultra-high-sulfur keratin 1 - mouse
>gi|200962|gb|AAA40106.1| (M37759) serine 1 ultra high sulfur
protein [Mus musculus]
Length = 230
Frame 3 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 230
0 50 100 150 200
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.83, P = 0.56
Identities = 22/71 (30%), Positives = 28/71 (39%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C+S + C C K C S CK C C CC + S C + C+
Sbjct: 121 CSSGCGSSCCQSSCCKP-CCCQSSCCKPCCCQSSCC--KPCCSSG--CGSSCCQSSCCKP 175
Query: 465 GNCRGGCC--CCC 497
C+ CC CCC
Sbjct: 176 CCCQSSCCKPCCC 188
Score = 83 (29.2 bits), Expect = 3.3, P = 0.96
Identities = 22/72 (30%), Positives = 27/72 (37%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCS---IQTVVPSALWC*DW*EEEDS 455
C+S + C C K C S CK C C CC Q+ C + S
Sbjct: 159 CSSGCGSSCCQSSCCKP-CCCQSSCCKPCCCQSSCCKPCCCQSSCCKPCCC------QSS 211
Query: 456 CQEGNCRGGCCCCCC 500
C + C GC CC
Sbjct: 212 CCKPCCSSGCGSSCC 226
Score = 82 (28.9 bits), Expect = 4.3, P = 0.99
Identities = 24/75 (32%), Positives = 28/75 (37%), Frame = +3
Query: 282 SCNSQDSYTRCGLQCLKQRACAYSD-SCKKCY-CSG*CCSIQTVVPS-ALWC*DW*EEED 452
SC S S CG C K C SC C C CC P + C +
Sbjct: 76 SCGS--SCGGCGSSCCKPVCCCVPVCSCSSCGGCKPCCCQSSCCKPCCSSGCGSSCCQSS 133
Query: 453 SCQEGNCRGGCC--CCC 497
C+ C+ CC CCC
Sbjct: 134 CCKPCCCQSSCCKPCCC 150
Score = 82 (28.9 bits), Expect = 4.3, P = 0.99
Identities = 24/75 (32%), Positives = 29/75 (38%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C+S + C C K C S CK C C CC P C + C+
Sbjct: 159 CSSGCGSSCCQSSCCKP-CCCQSSCCKPCCCQSSCCK-----PCC--C-----QSSCCKP 205
Query: 465 GNCRGGCC--CCC--CGRS 509
C+ CC CC CG S
Sbjct: 206 CCCQSSCCKPCCSSGCGSS 224
Score = 81 (28.5 bits), Expect = 5.7, P = 1.0
Identities = 22/71 (30%), Positives = 25/71 (35%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C+S + C C K C S CK C C CC P C C
Sbjct: 121 CSSGCGSSCCQSSCCKP-CCCQSSCCKPCCCQSSCCK-----PC---C------SSGCGS 165
Query: 465 GNCRGGCC--CCC 497
C+ CC CCC
Sbjct: 166 SCCQSSCCKPCCC 178
Score = 79 (27.8 bits), Expect = 9.7, P = 1.0
Identities = 22/78 (28%), Positives = 29/78 (37%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCS--IQTVVPSALW----C*DW*EE 446
C+S + C C K C S CK C C CC + S+ C +
Sbjct: 121 CSSGCGSSCCQSSCCKP-CCCQSSCCKPCCCQSSCCKPCCSSGCGSSCCQSSCCKPCCCQ 179
Query: 447 EDSCQEGNCRGGCC--CCC 497
C+ C+ CC CCC
Sbjct: 180 SSCCKPCCCQSSCCKPCCC 198
>gi|12736003 ref|XP_011969.1| UHS KerB [Homo sapiens]
Length = 187
Frame 3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 1.2, P = 0.69
Identities = 23/75 (30%), Positives = 30/75 (40%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C+S + C C K C+ S CK C CS C S + S+ C + C+
Sbjct: 96 CSSGCGSSCCQSSCCKP-CCSQSSCCKPCSCSSGCGS--SCCQSSC-CKPCCSQSSCCKP 151
Query: 465 GNCRGGCCCCCCGRS 509
C GC CC S
Sbjct: 152 CCCSSGCGSSCCQSS 166
Score = 82 (28.9 bits), Expect = 2.7, P = 0.93
Identities = 26/80 (32%), Positives = 34/80 (42%), Frame = +3
Query: 285 CNSQDSYTRCGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQE 464
C+S + C C K C+ S CK C CS C S + S+ C + C+
Sbjct: 96 CSSGCGSSCCQSSCCKP-CCSQSSCCKPCSCSSGCGS--SCCQSSC-CKPCCSQSSCCKP 151
Query: 465 GNCRGGC---CC---CC---CGRS 509
C GC CC CC C +S
Sbjct: 152 CCCSSGCGSSCCQSSCCKPCCSQS 175
>gi|12655464|emb|CAC27584.1| (AJ406945) keratin associated protein 4.15 [Homo
sapiens]
Length = 193
Frame 3 hits (HSPs): _______________ ________________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 1.3, P = 0.72
Identities = 22/65 (33%), Positives = 25/65 (38%), Frame = +3
Query: 312 CGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCCC 491
C C R C S C+ C CC + S C SC E +C CCC
Sbjct: 103 CRPSCCVSRCCR-SQCCQSVCCQPTCCRPSCCISSC--C------RPSCCESSCCRPCCC 153
Query: 492 --CCCGR 506
CCC R
Sbjct: 154 RPCCCLR 160
Score = 79 (27.8 bits), Expect = 6.7, P = 1.0
Identities = 18/63 (28%), Positives = 24/63 (38%), Frame = +3
Query: 312 CGLQCLKQRACAYSDSCKKCYCSG*CCSIQTVVPSALWC*DW*EEEDSCQEGNCRGGCCC 491
CGL+ + +C + C+ C CC P C + CQ CR CC
Sbjct: 3 CGLETCCRPSCCQTTCCRTTCCRPSCCVSSCCRPQC--C-----QSVCCQPTCCRPSCCP 55
Query: 492 CCC 500
CC
Sbjct: 56 SCC 58
WARNING: HSPs involving 31 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.92
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.349 0.151 0.626
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.345 0.151 0.493
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.316 0.130 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.331 0.142 0.439
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.352 0.151 0.498
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.339 0.141 0.527
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 194 192 10. 76 3 12 22 0.12 34
31 0.098 38
+2 0 194 192 10. 76 3 12 22 0.12 34
31 0.098 38
+1 0 195 193 10. 76 3 12 22 0.12 34
31 0.099 38
-1 0 195 194 10. 76 3 12 22 0.091 35
31 0.10 38
-2 0 194 192 10. 76 3 12 22 0.12 34
31 0.098 38
-3 0 194 192 10. 76 3 12 22 0.12 34
31 0.098 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 81
No. of states in DFA: 597 (59 KB)
Total size of DFA: 231 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 209.91u 1.27s 211.18t Elapsed: 00:00:39
Total cpu time: 209.97u 1.32s 211.29t Elapsed: 00:00:39
Start: Thu Jan 17 12:44:59 2002 End: Thu Jan 17 12:45:38 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000