BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TF2263
(328 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53711407|ref|YP_097399.1| TraN [Bacteroides fragilis YCH... 639 0.0
gi|156861346|gb|EDO54777.1| hypothetical protein BACUNI_017... 633 e-180
gi|10444278|gb|AAG17839.1|AF289050_14 TraN [Bacteroides the... 633 e-180
gi|46242779|gb|AAS83484.1| TraN [Bacteroides fragilis] 625 e-177
gi|150003246|ref|YP_001297990.1| conserved protein found in... 465 e-129
gi|156860472|gb|EDO53903.1| hypothetical protein BACUNI_025... 463 e-129
gi|154491644|ref|ZP_02031270.1| hypothetical protein PARMER... 463 e-129
gi|150004135|ref|YP_001298879.1| conserved protein found in... 462 e-129
gi|150010444|ref|YP_001305187.1| conserved protein found in... 459 e-128
gi|29347699|ref|NP_811202.1| conserved protein found in con... 457 e-127
gi|156862811|gb|EDO56242.1| hypothetical protein BACUNI_000... 452 e-125
gi|156112088|gb|EDO13833.1| hypothetical protein BACOVA_004... 447 e-124
gi|29348005|ref|NP_811508.1| conserved protein found in con... 446 e-123
gi|60680754|ref|YP_210898.1| conserved hypothetical protein... 379 e-103
gi|29345496|ref|NP_808999.1| conserved protein found in con... 377 e-103
gi|156859741|gb|EDO53172.1| hypothetical protein BACUNI_031... 375 e-102
gi|60681267|ref|YP_211411.1| conserved hypothetical protein... 370 e-101
gi|53712642|ref|YP_098634.1| conserved protein found in con... 367 e-100
gi|34541142|ref|NP_905621.1| conjugative transposon protein... 335 3e-90
gi|150004683|ref|YP_001299427.1| conserved protein found in... 309 1e-82
gi|29350188|ref|NP_813691.1| conserved protein found in con... 302 2e-80
gi|146300748|ref|YP_001195339.1| hypothetical protein Fjoh_... 229 1e-58
gi|29611516|ref|NP_818969.1| TraN-like protein [Bacteroides... 145 2e-33
gi|150003513|ref|YP_001298257.1| conserved hypothetical Tra... 133 2e-29
gi|60680997|ref|YP_211141.1| conserved hypothetical TraN-li... 126 2e-27
gi|146301280|ref|YP_001195871.1| hypothetical protein Fjoh_... 120 1e-25
gi|146302085|ref|YP_001196676.1| hypothetical protein Fjoh_... 112 3e-23
gi|52421231|ref|YP_087143.1| conserved hypothetical protein... 77 1e-12
gi|120435715|ref|YP_861401.1| TraN-like secreted protein [G... 76 3e-12
gi|60650178|ref|YP_209731.1| putative plasmid transfer prot... 69 3e-10
gi|145308109|gb|ABP57295.1| hypothetical protein bst022 [Ba... 65 5e-09
gi|53714103|ref|YP_100095.1| conserved protein found in con... 63 3e-08
gi|156107166|gb|EDO08911.1| hypothetical protein BACOVA_047... 62 5e-08
gi|150005885|ref|YP_001300629.1| conserved hypothetical pro... 60 2e-07
gi|156110065|gb|EDO11810.1| hypothetical protein BACOVA_023... 58 6e-07
gi|86141449|ref|ZP_01059995.1| conserved protein found in c... 57 1e-06
>gi|53711407|ref|YP_097399.1| TraN [Bacteroides fragilis YCH46]
gi|154490895|ref|ZP_02030836.1| hypothetical protein PARMER_00812 [Parabacteroides merdae ATCC
43184]
gi|52214272|dbj|BAD46865.1| TraN [Bacteroides fragilis YCH46]
gi|154088643|gb|EDN87687.1| hypothetical protein PARMER_00812 [Parabacteroides merdae ATCC
43184]
Length = 328
Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats.
Identities = 315/328 (96%), Positives = 321/328 (97%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
MRKVI+MFALAMGI TANAQENVTVETTNGSE+ TLTKEVYPQKEADGDLYHGL+RKL F
Sbjct: 1 MRKVIIMFALAMGIITANAQENVTVETTNGSEQPTLTKEVYPQKEADGDLYHGLSRKLTF 60
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
DRM+PPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAEN+IRVKATVRNFPNET
Sbjct: 61 DRMIPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENIIRVKATVRNFPNET 120
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDG VNRPNNAQEIYLKELGSESPML
Sbjct: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGSTVNRPNNAQEIYLKELGSESPML 180
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT
Sbjct: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
WKIVDKKVAKRTAVQE+IILPLRAQNYATLVPGKKSERTVFTMAKFTIPD KCLVVELNE
Sbjct: 241 WKIVDKKVAKRTAVQEQIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDDKCLVVELNE 300
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
KNGGRHQSFVIENEDLVRA TINELQVR
Sbjct: 301 KNGGRHQSFVIENEDLVRAGTINELQVR 328
>gi|156861346|gb|EDO54777.1| hypothetical protein BACUNI_01762 [Bacteroides uniformis ATCC 8492]
Length = 328
Score = 633 bits (1633), Expect = e-180, Method: Composition-based stats.
Identities = 312/328 (95%), Positives = 321/328 (97%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
M+KVI+MFALAMGI TANAQENVTV T NGSE+ TLTKEVYPQKEADGDLYHGLT+KL F
Sbjct: 1 MKKVIIMFALAMGIVTANAQENVTVVTDNGSEQPTLTKEVYPQKEADGDLYHGLTKKLTF 60
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
DRMVPPHGLEVTYDKTVHVIFP+EVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET
Sbjct: 61 DRMVPPHGLEVTYDKTVHVIFPSEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML
Sbjct: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
VRLIMKSI+KQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEI+NQSNVPFDVDYIT
Sbjct: 181 VRLIMKSIYKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIRNQSNVPFDVDYIT 240
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
WKIVDKKVAKRTAVQE+IILPLRAQNYAT VPG+KSERTVFTMAKFTIPDGKCLVVELNE
Sbjct: 241 WKIVDKKVAKRTAVQEQIILPLRAQNYATCVPGRKSERTVFTMAKFTIPDGKCLVVELNE 300
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
KNGGRHQSFVIENEDLVRA TINELQVR
Sbjct: 301 KNGGRHQSFVIENEDLVRAGTINELQVR 328
>gi|10444278|gb|AAG17839.1|AF289050_14 TraN [Bacteroides thetaiotaomicron]
Length = 329
Score = 633 bits (1633), Expect = e-180, Method: Composition-based stats.
Identities = 315/329 (95%), Positives = 322/329 (97%), Gaps = 1/329 (0%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGS-EELTLTKEVYPQKEADGDLYHGLTRKLG 59
MRKVI+MFALAMGIATANAQENVTVETTNGS E+ TLTKEVYPQKEADGDLYHGL+RKL
Sbjct: 1 MRKVIIMFALAMGIATANAQENVTVETTNGSNEQPTLTKEVYPQKEADGDLYHGLSRKLT 60
Query: 60 FDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNE 119
FDRM+PPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNF NE
Sbjct: 61 FDRMIPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFSNE 120
Query: 120 TNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPM 179
TNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDG VNRPNNAQEIYLKELGSESPM
Sbjct: 121 TNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGSTVNRPNNAQEIYLKELGSESPM 180
Query: 180 LVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYI 239
LVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYI
Sbjct: 181 LVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYI 240
Query: 240 TWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELN 299
TWKIVDKKVAKRTAVQE+IILPLRAQNYATLVPG+KSERTVFTMAKFTIPD KCL+VELN
Sbjct: 241 TWKIVDKKVAKRTAVQEQIILPLRAQNYATLVPGRKSERTVFTMAKFTIPDDKCLIVELN 300
Query: 300 EKNGGRHQSFVIENEDLVRANTINELQVR 328
EKNGGRHQSFVIENEDLVRANTINELQVR
Sbjct: 301 EKNGGRHQSFVIENEDLVRANTINELQVR 329
>gi|46242779|gb|AAS83484.1| TraN [Bacteroides fragilis]
Length = 328
Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats.
Identities = 312/328 (95%), Positives = 318/328 (96%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
M+KVI+M ALAMGIATANAQENVTV T NGSE+ TLTKEVYPQKEADGDLYHGLT+KL F
Sbjct: 1 MKKVIIMLALAMGIATANAQENVTVVTDNGSEQPTLTKEVYPQKEADGDLYHGLTKKLTF 60
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
DRMVPPHGLEVTYDKTVHVIFP+EVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET
Sbjct: 61 DRMVPPHGLEVTYDKTVHVIFPSEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
NMSVITEDGSFYTFNVKYA EPLLLNVEMCDFIHDGE VNRPNNAQEIYLKELGSESPML
Sbjct: 121 NMSVITEDGSFYTFNVKYADEPLLLNVEMCDFIHDGEKVNRPNNAQEIYLKELGSESPML 180
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
VRLIMKSI QNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT
Sbjct: 181 VRLIMKSILGQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
WKIVDKKVAKRTAVQE+IILPLRAQNYATLVPGKKSERTVFTMAKFTIPD KCLVVELNE
Sbjct: 241 WKIVDKKVAKRTAVQEQIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDDKCLVVELNE 300
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
KNGGRHQSFVIENEDLVRANTINELQVR
Sbjct: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
>gi|150003246|ref|YP_001297990.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
gi|149931670|gb|ABR38368.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
Length = 304
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 227/328 (69%), Positives = 267/328 (81%), Gaps = 24/328 (7%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
M+K++MM AL G A AQ+ + GD Y GL+RK+GF
Sbjct: 1 MKKILMMLALIAGTVAAYAQQ------------------------SSGDYYEGLSRKIGF 36
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
RM+PPHGLE+TYDKTVH+IFP+ VRYVDLGSP+LIAGKADGAENVIRVKAT ++F +ET
Sbjct: 37 SRMIPPHGLEITYDKTVHIIFPSPVRYVDLGSPNLIAGKADGAENVIRVKATRKHFRSET 96
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
NMSVITEDG+FYTFNVKYA EPLLLNVEMCDFIHDGEAVNRPNNA EIYL+EL ESP L
Sbjct: 97 NMSVITEDGNFYTFNVKYADEPLLLNVEMCDFIHDGEAVNRPNNAMEIYLQELAGESPRL 156
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
VRLIMKS+++QNKR+VKHIGCKRFG+QYLLKG+Y H L+YFHTE+KN +NVPFDVD++T
Sbjct: 157 VRLIMKSVYEQNKRKVKHIGCKRFGVQYLLKGLYAHGELIYFHTEVKNATNVPFDVDFVT 216
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
+KIVDKK+ KRTA+QE++I PLRA NY T V GKK+ERTVF + KFTIPD K L+VE+ E
Sbjct: 217 FKIVDKKIMKRTAMQEQVIYPLRAFNYVTRVDGKKNERTVFALPKFTIPDDKKLIVEMYE 276
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
K GGRHQSF +ENEDLVRA T+NEL+VR
Sbjct: 277 KQGGRHQSFDVENEDLVRAETVNELKVR 304
>gi|156860472|gb|EDO53903.1| hypothetical protein BACUNI_02524 [Bacteroides uniformis ATCC 8492]
Length = 304
Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats.
Identities = 227/328 (69%), Positives = 267/328 (81%), Gaps = 24/328 (7%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
M+K++MMFAL MG A AQ+ GD Y GL+RK+GF
Sbjct: 1 MKKILMMFALIMGAVAAYAQQ------------------------GSGDYYEGLSRKIGF 36
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
+M+PPHGLE+TYDKTVH+IFP+ VRYVDLGSP+LIAGKADGAENVIRVKAT ++F +ET
Sbjct: 37 SQMIPPHGLEITYDKTVHIIFPSPVRYVDLGSPNLIAGKADGAENVIRVKATRKHFRSET 96
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
NMSVITEDG+FYTFNVKYA EPLLLNVEMCDFIHDGE+VNRPNNA EIYL+EL ESP L
Sbjct: 97 NMSVITEDGNFYTFNVKYADEPLLLNVEMCDFIHDGESVNRPNNAMEIYLQELAGESPRL 156
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
VRLIMKS++ Q+KR+VKHIG KRFG+QYLLKG+Y H LLYFHTE+KN ++VPFDVD++T
Sbjct: 157 VRLIMKSVYGQDKRKVKHIGSKRFGVQYLLKGLYAHGELLYFHTEVKNATHVPFDVDFVT 216
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
+KIVDKK+ KRTA+QE++I PLRA NY T V GKK+ERTVF + KFTIPDGK LVVE+ E
Sbjct: 217 FKIVDKKIVKRTAMQEQVIYPLRAFNYVTRVDGKKNERTVFALPKFTIPDGKKLVVEMYE 276
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
K GGRHQSF +ENEDLVRA T+NEL+VR
Sbjct: 277 KQGGRHQSFEVENEDLVRAETVNELKVR 304
>gi|154491644|ref|ZP_02031270.1| hypothetical protein PARMER_01255 [Parabacteroides merdae ATCC
43184]
gi|154088445|gb|EDN87490.1| hypothetical protein PARMER_01255 [Parabacteroides merdae ATCC
43184]
Length = 304
Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats.
Identities = 226/328 (68%), Positives = 267/328 (81%), Gaps = 24/328 (7%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
M+K++M+FAL MG A AQ+ GD Y GL+RK+GF
Sbjct: 1 MKKILMIFALIMGAVAAYAQQ------------------------GSGDYYEGLSRKIGF 36
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
+M+PPHGLE+TYDKTVH+IFP+ VRYVDLGSP+LIAGKADGAENVIRVKAT ++F +ET
Sbjct: 37 SQMIPPHGLEITYDKTVHIIFPSPVRYVDLGSPNLIAGKADGAENVIRVKATRKHFRSET 96
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
NMSVITEDG+FYTFNVKYA EPLLLNVEMCDFIHDGE+VNRPNNA EIYL+EL ESP L
Sbjct: 97 NMSVITEDGNFYTFNVKYADEPLLLNVEMCDFIHDGESVNRPNNAMEIYLQELAGESPRL 156
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
VRLIMKS++ Q+KR+VKHIG KRFG+QYLLKG+Y H LLYFHTE+KN ++VPFDVD++T
Sbjct: 157 VRLIMKSVYGQDKRKVKHIGSKRFGVQYLLKGLYAHGELLYFHTEVKNATHVPFDVDFVT 216
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
+KIVDKK+ KRTA+QE++I PLRA NY T V GKK+ERTVF + KFTIPDGK LVVE+ E
Sbjct: 217 FKIVDKKIVKRTAMQEQVIYPLRAFNYVTRVDGKKNERTVFALPKFTIPDGKKLVVEMYE 276
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
K GGRHQSF +ENEDLVRA T+NEL+VR
Sbjct: 277 KQGGRHQSFEVENEDLVRAGTVNELKVR 304
>gi|150004135|ref|YP_001298879.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
gi|149932559|gb|ABR39257.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
Length = 304
Score = 462 bits (1190), Expect = e-129, Method: Composition-based stats.
Identities = 226/328 (68%), Positives = 268/328 (81%), Gaps = 24/328 (7%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
M+K++MMFAL MG TA AQ+ + GD Y GL+RK+GF
Sbjct: 1 MKKILMMFALIMGAVTAYAQQ------------------------SSGDYYEGLSRKIGF 36
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
+M+PPHGLE+TYDKTVH+IFP+ VRYVDLGSP+LIAGKADGAENVIRVKAT ++F +ET
Sbjct: 37 SQMIPPHGLEITYDKTVHIIFPSPVRYVDLGSPNLIAGKADGAENVIRVKATRKHFRSET 96
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
NMSVITEDG+FYTFNVKYA EPLLLNVEMCDFIHDGE+VN PNNA EIYL+EL ESP L
Sbjct: 97 NMSVITEDGNFYTFNVKYADEPLLLNVEMCDFIHDGESVNHPNNAMEIYLQELAGESPRL 156
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
VRLIMKS++ Q+KR+VKH+G KRFG+QYLLKG+Y H LLYFHTE+KN ++VPFDVD++T
Sbjct: 157 VRLIMKSVYMQDKRKVKHVGSKRFGVQYLLKGLYAHGELLYFHTEVKNATHVPFDVDFVT 216
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
+KIVDKK+ KRTA+QE++I PLRA NY T V GKK+ERTVF + KFTIPDGK LVVE+ E
Sbjct: 217 FKIVDKKIVKRTAMQEQVIYPLRAFNYVTRVDGKKNERTVFALPKFTIPDGKKLVVEMYE 276
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
K GGRHQSF +ENEDLVRA T+NEL+VR
Sbjct: 277 KQGGRHQSFEVENEDLVRAGTVNELKVR 304
>gi|150010444|ref|YP_001305187.1| conserved protein found in conjugate transposon [Parabacteroides
distasonis ATCC 8503]
gi|149938868|gb|ABR45565.1| conserved protein found in conjugate transposon [Parabacteroides
distasonis ATCC 8503]
Length = 304
Score = 459 bits (1182), Expect = e-128, Method: Composition-based stats.
Identities = 223/328 (67%), Positives = 263/328 (80%), Gaps = 24/328 (7%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
MRK++MMFAL G A AQ+ + GD + GL+RK+GF
Sbjct: 1 MRKILMMFALLTGFMAAYAQQ------------------------SGGDYFEGLSRKIGF 36
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
RM+PPHGLE+TYDKTVHVIFP+ ++YVDLGS +LIAGKADGAENVIRVKA ++F NET
Sbjct: 37 SRMIPPHGLEITYDKTVHVIFPSPIKYVDLGSTNLIAGKADGAENVIRVKAARKHFRNET 96
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
NMSVITEDG+FYTFNVKYA EPLLLNVEMCDFIHDGE VNRPNNA EIYL+ELGSESP L
Sbjct: 97 NMSVITEDGNFYTFNVKYADEPLLLNVEMCDFIHDGETVNRPNNAMEIYLQELGSESPRL 156
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
VRLIMKS+HKQ+K +KHIGCKRFG+++LLKG+YTH LLYFHTE++N ++VPFDVD++T
Sbjct: 157 VRLIMKSVHKQDKHWIKHIGCKRFGVRFLLKGLYTHGDLLYFHTEVRNATHVPFDVDFVT 216
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
+KIVDKK+ +RTA+QE++I PLRA NY V GKK ERTVF + KFTIPD K LVVE+ E
Sbjct: 217 FKIVDKKIVRRTAMQEQVIYPLRAFNYVIRVEGKKDERTVFALPKFTIPDDKKLVVEMYE 276
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
K GGRHQ F ++NEDLVRA TINELQVR
Sbjct: 277 KQGGRHQIFEVDNEDLVRAETINELQVR 304
>gi|29347699|ref|NP_811202.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29339600|gb|AAO77396.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 339
Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats.
Identities = 225/339 (66%), Positives = 278/339 (82%), Gaps = 11/339 (3%)
Query: 1 MRKVIMMFALAMGIATANAQENVTV-ETTNGSEELTLTKEV----YPQKE------ADGD 49
M+KVI+M A A+G+ A AQ+ V V +T N +EE + E P KE + GD
Sbjct: 1 MKKVILMMAFAIGMTGAYAQKTVKVGKTGNDTEETADSGETGTTPLPDKEDARRSPSTGD 60
Query: 50 LYHGLTRKLGFDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRV 109
L+ GLTR + FDRMVPP+ LEVT++KTVH+IFPA ++YVDLGS D++AGKADG+ENV+RV
Sbjct: 61 LFDGLTRPVTFDRMVPPYALEVTFNKTVHLIFPAAIKYVDLGSADILAGKADGSENVLRV 120
Query: 110 KATVRNFPNETNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIY 169
KA +R+F ETN++VIT+DGS+YTFNVKYA EP LN+EM DFIHDGEAVNRPNN+QEIY
Sbjct: 121 KAALRDFSRETNLAVITDDGSYYTFNVKYADEPAKLNIEMKDFIHDGEAVNRPNNSQEIY 180
Query: 170 LKELGSESPMLVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQ 229
L ELGSESP+LVRLIMKS++ NKR VKHIGCKRFGIQY+LKGIYTHNGLLYFH E+KN
Sbjct: 181 LTELGSESPLLVRLIMKSVYDNNKRLVKHIGCKRFGIQYILKGIYTHNGLLYFHMELKNA 240
Query: 230 SNVPFDVDYITWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIP 289
SNVPF VD++T+K+VDKKVAKRTA+QE++I+PLRA NY T V GK +ERTVFT+ KFT+P
Sbjct: 241 SNVPFSVDFVTFKVVDKKVAKRTAIQEQVIVPLRAFNYVTAVDGKSTERTVFTLPKFTLP 300
Query: 290 DGKCLVVELNEKNGGRHQSFVIENEDLVRANTINELQVR 328
D K LVVE+NE+NGGRHQ F++ N +L+RA INEL+V+
Sbjct: 301 DDKQLVVEMNEQNGGRHQRFILTNAELIRARVINELKVK 339
>gi|156862811|gb|EDO56242.1| hypothetical protein BACUNI_00080 [Bacteroides uniformis ATCC 8492]
Length = 334
Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats.
Identities = 223/334 (66%), Positives = 268/334 (80%), Gaps = 6/334 (1%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYP------QKEADGDLYHGL 54
M+K+I+M A ++ A AQ+ V VE E +E + + GDLY GL
Sbjct: 1 MKKLILMLAFCASVSGAYAQKTVKVEKVQQETEAVAAEEEDASEEEVRKSPSTGDLYEGL 60
Query: 55 TRKLGFDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVR 114
TR + FDRMVPP+GLEVT+ KTVH+IFPA +RYVDLGS D+IAGKADG+ENV+RVKA +R
Sbjct: 61 TRTVTFDRMVPPYGLEVTFSKTVHLIFPAAIRYVDLGSADIIAGKADGSENVLRVKAALR 120
Query: 115 NFPNETNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELG 174
+F ETN++VITEDGS+YTFNVKYA EP LN+EM DFIHDGEAVNRPNN+ E+YLKELG
Sbjct: 121 DFSRETNLAVITEDGSYYTFNVKYADEPTKLNIEMKDFIHDGEAVNRPNNSMEVYLKELG 180
Query: 175 SESPMLVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPF 234
SESP+LVRLIMKSIH N R VKHIGCKRFGIQY LKGIYTHNGLLYFHTE+KN SNVPF
Sbjct: 181 SESPLLVRLIMKSIHANNDRLVKHIGCKRFGIQYTLKGIYTHNGLLYFHTELKNSSNVPF 240
Query: 235 DVDYITWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCL 294
VDYIT+K+VD+K+AKRTA+QE++I+PLRA NY T+V GK ERTVFT+ KFT+PD K L
Sbjct: 241 HVDYITFKVVDRKIAKRTAIQEQVIVPLRAYNYVTVVNGKSRERTVFTLPKFTLPDDKEL 300
Query: 295 VVELNEKNGGRHQSFVIENEDLVRANTINELQVR 328
VVE+NE+ GGRHQ FVI N +L+RA INEL+++
Sbjct: 301 VVEMNEQAGGRHQKFVIGNAELIRARVINELKMK 334
>gi|156112088|gb|EDO13833.1| hypothetical protein BACOVA_00458 [Bacteroides ovatus ATCC 8483]
Length = 305
Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats.
Identities = 216/329 (65%), Positives = 265/329 (80%), Gaps = 25/329 (7%)
Query: 1 MRKVIMMF-ALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLG 59
M+K++MMF AL G+ A+AQ + GD + GL+RK+G
Sbjct: 1 MKKILMMFFALMTGVTAASAQL------------------------SSGDFFEGLSRKIG 36
Query: 60 FDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNE 119
F RM+ PHGLE+TYDKTVHVIFP+ ++YVDLGS +LIAGKAD AENVIRVKA ++F +E
Sbjct: 37 FSRMIVPHGLEITYDKTVHVIFPSPIKYVDLGSTNLIAGKADAAENVIRVKAAKKHFRDE 96
Query: 120 TNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPM 179
TNMSVITEDG+FYTFNV+YA EPLLLNVEMCDFIHDGE VNRPNNA EIYL+ELG+ESP
Sbjct: 97 TNMSVITEDGNFYTFNVRYADEPLLLNVEMCDFIHDGETVNRPNNAMEIYLQELGNESPR 156
Query: 180 LVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYI 239
LVRLIMKS+H+Q+KR V+HIGCKRFG+Q+LL+G+YTHN LLYFHT+++N++NVPFDVD++
Sbjct: 157 LVRLIMKSVHRQDKRRVRHIGCKRFGVQFLLRGLYTHNDLLYFHTQLRNETNVPFDVDFV 216
Query: 240 TWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELN 299
T+KIVDKK+ KRTA+QE++I PLRA NY T V GK SERTVF + KFTIP+ K LVVE+
Sbjct: 217 TFKIVDKKIVKRTAMQEQVIYPLRACNYVTRVDGKSSERTVFALPKFTIPEDKKLVVEMY 276
Query: 300 EKNGGRHQSFVIENEDLVRANTINELQVR 328
EK GGRHQ F ++NEDLVRA +NEL+VR
Sbjct: 277 EKQGGRHQMFEVDNEDLVRAEPVNELKVR 305
>gi|29348005|ref|NP_811508.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29339907|gb|AAO77702.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 309
Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats.
Identities = 215/329 (65%), Positives = 264/329 (80%), Gaps = 25/329 (7%)
Query: 1 MRKVIMMF-ALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLG 59
M+K++MMF AL G+ A+AQ + GD + GL+RK+G
Sbjct: 5 MKKILMMFFALMTGVTAASAQL------------------------SSGDFFEGLSRKIG 40
Query: 60 FDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNE 119
F RM+ PHGLE+TYDKTVHVIFP+ ++YVDLGS +LIAGKAD AENVIRVKA ++F +E
Sbjct: 41 FSRMIAPHGLEITYDKTVHVIFPSPIKYVDLGSTNLIAGKADAAENVIRVKAAKKHFRDE 100
Query: 120 TNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPM 179
TNMSVITEDG+FYTFNV+YA EPLLLNVEMCDFIHDGE VNRPNNA EIYL+ELG+ESP
Sbjct: 101 TNMSVITEDGNFYTFNVRYADEPLLLNVEMCDFIHDGETVNRPNNAMEIYLQELGNESPR 160
Query: 180 LVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYI 239
LVRLIMKS+H+Q+KR V+HIGCKRFG+Q+LL+G+YTHN LLYFHT+++N++NVPFDVD++
Sbjct: 161 LVRLIMKSVHRQDKRRVRHIGCKRFGVQFLLRGLYTHNDLLYFHTQLRNETNVPFDVDFV 220
Query: 240 TWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELN 299
T+KIVDKK+ KRTA+QE++I PLRA NY T V GK SERTVF + KFTIP+ K LVVE+
Sbjct: 221 TFKIVDKKIVKRTAMQEQVIYPLRACNYVTRVDGKASERTVFALPKFTIPEDKKLVVEMY 280
Query: 300 EKNGGRHQSFVIENEDLVRANTINELQVR 328
EK GGRHQ F ++NE LVRA +NEL+VR
Sbjct: 281 EKQGGRHQMFEVDNESLVRAEPVNELKVR 309
>gi|60680754|ref|YP_210898.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
gi|60492188|emb|CAH06953.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
Length = 302
Score = 379 bits (972), Expect = e-103, Method: Composition-based stats.
Identities = 183/328 (55%), Positives = 242/328 (73%), Gaps = 26/328 (7%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
M+K+I+MFAL +G+ + AQ N DLY G+T+KL +
Sbjct: 1 MKKLIIMFALLLGVVSMKAQSN--------------------------DLYQGITKKLPY 34
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
+MV P+G++VT+ KTVH+IFP+ V+YVDLGS +IAGKADGAENV+RVKAT FP ET
Sbjct: 35 RQMVTPYGIQVTFAKTVHIIFPSAVKYVDLGSNYIIAGKADGAENVVRVKATTEGFPGET 94
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
N SVI EDGSFY+FN KYA EP +LN+EM DF+ + + + + IY +ELG+ESP+L
Sbjct: 95 NFSVICEDGSFYSFNAKYAHEPEMLNIEMKDFLENEDTTDFSHTRMNIYFRELGNESPLL 154
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
VRLIM+SI+K N RE+KH+GCKRFG+Q+L+KGIY+HNGL YFHT+ KN SNVPFD D+I
Sbjct: 155 VRLIMQSIYKNNDREIKHLGCKRFGVQFLVKGIYSHNGLFYFHTQTKNSSNVPFDTDFIR 214
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
+KIVDKKVAKRTA+QE +I P+R+ N ++ GK + RTV+T+ +FTIPD K L++EL E
Sbjct: 215 FKIVDKKVAKRTAIQETVIDPVRSYNEILVIGGKSTVRTVYTVPQFTIPDDKILIIELVE 274
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
KNGGRHQ+ +EN D+V A INEL+++
Sbjct: 275 KNGGRHQTIRVENSDVVAAKVINELKIK 302
>gi|29345496|ref|NP_808999.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29337388|gb|AAO75193.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 302
Score = 377 bits (968), Expect = e-103, Method: Composition-based stats.
Identities = 183/328 (55%), Positives = 242/328 (73%), Gaps = 26/328 (7%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
M+K+I+MFAL +G+ + AQ N DLY G+T+KL +
Sbjct: 1 MKKLIIMFALLLGVVSMKAQSN--------------------------DLYQGITKKLPY 34
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
+MV P+G++VT+ KTVH+IFP+ V+YVDLGS +IAGKADGAENV+RVKAT FP ET
Sbjct: 35 RQMVTPYGVQVTFAKTVHIIFPSAVKYVDLGSNYIIAGKADGAENVVRVKATTEGFPGET 94
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
N SVI EDGSFY+FN KYA EP +LN+EM DF+ + + + + IY +ELG+ESP+L
Sbjct: 95 NFSVICEDGSFYSFNAKYAHEPEMLNIEMKDFLENEDTTDFSHTRMNIYFRELGNESPLL 154
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
V+LIM+SI+K N RE+KH+GCKRFG+Q+L+KGIY+HNGL YFHT+ KN SNVPFD D+I
Sbjct: 155 VKLIMQSIYKNNDREIKHLGCKRFGVQFLVKGIYSHNGLFYFHTQTKNSSNVPFDTDFIR 214
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
+KIVDKKVAKRTA+QE +I P+R+ N ++ GK + RTV+T+ +FTIPD K LV+EL E
Sbjct: 215 FKIVDKKVAKRTAIQETVIDPVRSYNEILVIGGKSTVRTVYTVPQFTIPDDKILVIELVE 274
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
KNGGRHQ+ +EN D+V A INEL+++
Sbjct: 275 KNGGRHQTIRVENSDVVAAKVINELKIK 302
>gi|156859741|gb|EDO53172.1| hypothetical protein BACUNI_03187 [Bacteroides uniformis ATCC 8492]
Length = 312
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 183/329 (55%), Positives = 241/329 (73%), Gaps = 18/329 (5%)
Query: 1 MRKVIMMFALAMGIAT-ANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLG 59
M+K+ AL MG+ T ANAQ N T+ Q+ A DLY G+TRKL
Sbjct: 1 MKKIFGWVALLMGMVTGANAQVNDTI-----------------QRAAGNDLYQGITRKLP 43
Query: 60 FDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNE 119
+ +MV PHG++VT+ KTVH+IFP+ VRYVDLGS +IAGKADGAENVIRVKAT FP E
Sbjct: 44 YRQMVTPHGVQVTFAKTVHIIFPSAVRYVDLGSNWIIAGKADGAENVIRVKATTEGFPGE 103
Query: 120 TNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPM 179
TN SVI EDGSFY+FN +YA EP +LN+EM DF+ +G+ + + IY +EL ESP+
Sbjct: 104 TNFSVICEDGSFYSFNARYAHEPEMLNIEMKDFLENGDTTDFSHTRMNIYFRELAGESPL 163
Query: 180 LVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYI 239
LV+LIM+SI+K+++RE++H+GCKRFG+Q+LLK +++HNGL YFHTE +N+SNV F D+I
Sbjct: 164 LVKLIMQSIYKEDRREIRHLGCKRFGVQFLLKSVHSHNGLFYFHTETRNRSNVAFRTDFI 223
Query: 240 TWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELN 299
+KIVDKKV KRTA+QER+I P+R+ N + GK RTV+ + +FTIPD K LV+EL
Sbjct: 224 RFKIVDKKVPKRTAIQERVIDPVRSYNEVLVTEGKSDVRTVYAVPQFTIPDDKLLVIELF 283
Query: 300 EKNGGRHQSFVIENEDLVRANTINELQVR 328
EK+GGRHQ+ +EN DLV A INEL+++
Sbjct: 284 EKDGGRHQTIRVENADLVAAKQINELKIK 312
>gi|60681267|ref|YP_211411.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
gi|60492701|emb|CAH07474.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
Length = 312
Score = 370 bits (950), Expect = e-101, Method: Composition-based stats.
Identities = 180/329 (54%), Positives = 241/329 (73%), Gaps = 18/329 (5%)
Query: 1 MRKVIMMFALAMGIAT-ANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLG 59
M+K+ AL +G+ T ANAQ N T++ T G+ DLY G+TRKL
Sbjct: 1 MKKIFGWVALLVGMVTGANAQVNDTIQRTTGN-----------------DLYQGITRKLP 43
Query: 60 FDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNE 119
+ +MV PHG++VT+ KTVH+IFP+ VRYVDLGS +IAGKADGAENVIRVKA FP E
Sbjct: 44 YWQMVTPHGVQVTFAKTVHIIFPSAVRYVDLGSNWIIAGKADGAENVIRVKAATEGFPGE 103
Query: 120 TNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPM 179
TN SVI EDGSFY+FN +YA EP +LN+EM DF+ +G+ + + I+ +EL ESP+
Sbjct: 104 TNFSVICEDGSFYSFNARYAHEPEMLNIEMKDFLENGDTTDFSHTRMNIHFRELAGESPL 163
Query: 180 LVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYI 239
LV+LIM+SI+K+++RE++H+GCKRFG+Q+LLK +++HNGL YFHTE +N+SNV F D+I
Sbjct: 164 LVKLIMQSIYKEDRREIRHLGCKRFGVQFLLKSVHSHNGLFYFHTETRNRSNVAFRTDFI 223
Query: 240 TWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELN 299
+KIVDKKV KRTA+QER+I P+R+ N + GK RTV+ + +FTIPD K LV+EL
Sbjct: 224 RFKIVDKKVPKRTAIQERVIDPVRSYNEVLVTEGKSDVRTVYAVPQFTIPDDKLLVIELF 283
Query: 300 EKNGGRHQSFVIENEDLVRANTINELQVR 328
EK+GGRHQ+ +EN DLV A INEL+++
Sbjct: 284 EKDGGRHQTIRVENADLVAARQINELKIK 312
>gi|53712642|ref|YP_098634.1| conserved protein found in conjugate transposon TraN [Bacteroides
fragilis YCH46]
gi|52215507|dbj|BAD48100.1| conserved protein found in conjugate transposon TraN [Bacteroides
fragilis YCH46]
Length = 311
Score = 367 bits (941), Expect = e-100, Method: Composition-based stats.
Identities = 181/328 (55%), Positives = 239/328 (72%), Gaps = 17/328 (5%)
Query: 1 MRKVIMMFALAMGIATANAQENVTVETTNGSEELTLTKEVYPQKEADGDLYHGLTRKLGF 60
M+++ ++ AL +G+ ANAQ TV+ G+ DLY G+TRKL +
Sbjct: 1 MKQIFVLLALLLGVCAANAQTTDTVKYAAGN-----------------DLYRGITRKLPY 43
Query: 61 DRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET 120
+MV P+G+EVT+ KTVH+IFPA VRYVDLGS +IAGKADGAENVIRVKAT FP ET
Sbjct: 44 RQMVTPYGVEVTFAKTVHIIFPAAVRYVDLGSNHIIAGKADGAENVIRVKATTEGFPGET 103
Query: 121 NMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPML 180
N SVI EDGSF++FN KYA EP +LN+EM DF+ + + + + IY +ELG+ESP+L
Sbjct: 104 NFSVICEDGSFFSFNAKYAREPEMLNIEMKDFLENEDTSDFSHTRMNIYFRELGNESPLL 163
Query: 181 VRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
V+LIM+SI+K N R+V+H+G KRFGIQ+L+KGIYT+NG+LY HT+ KN SNVPFD D+I
Sbjct: 164 VKLIMQSIYKNNDRKVRHLGSKRFGIQFLIKGIYTYNGMLYVHTQTKNSSNVPFDTDFIR 223
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
+KI DKKV KRTA+QE ++ +R+ N + GK + RTV+ + KFTIPD K LVVEL E
Sbjct: 224 FKITDKKVPKRTAIQETVLDAVRSYNEVIEIAGKSTVRTVYALPKFTIPDDKLLVVELYE 283
Query: 301 KNGGRHQSFVIENEDLVRANTINELQVR 328
KNGGRHQ+ +EN D+V A I+EL+++
Sbjct: 284 KNGGRHQTIRVENADIVNAEVIDELKIK 311
>gi|34541142|ref|NP_905621.1| conjugative transposon protein TraN [Porphyromonas gingivalis W83]
gi|34397458|gb|AAQ66520.1| conjugative transposon protein TraN [Porphyromonas gingivalis W83]
Length = 341
Score = 335 bits (858), Expect = 3e-90, Method: Composition-based stats.
Identities = 163/306 (53%), Positives = 222/306 (72%), Gaps = 26/306 (8%)
Query: 48 GDLYHGLTRKLGFDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVI 107
G Y G+++ + R+V P+GLEVT++KTVH+IFP+ +RYVDLGS +LIAGKA+ AENV+
Sbjct: 36 GAFYRGMSKAIPEGRVVLPYGLEVTFEKTVHLIFPSAIRYVDLGSNNLIAGKAEDAENVL 95
Query: 108 RVKATVRNFPNETNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFI-------------- 153
RVKA VRNF ETN+SVI EDGSFY++NVKYA EP LNVEM DF+
Sbjct: 96 RVKAAVRNFETETNLSVICEDGSFYSYNVKYAEEPEKLNVEMKDFLCQRGQSGACSGYAE 155
Query: 154 -----------HDGEAVNRPNNAQEIYLKELGSESPMLVRLIMKSIHKQNKREVKHIGCK 202
+ GE P+N +IY KELG+ESP+LV+L+M++I+K NKR VKHIG +
Sbjct: 156 GSQDRREAQFLYSGEG-RLPSNRADIYFKELGNESPVLVKLMMQTIYKHNKRTVKHIGAR 214
Query: 203 RFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIVDKKVAKRTAVQERIILPL 262
F +Q+LL+G+Y HNGLL+FH I+NQ+N+P VD+IT+K+VDKKVAKRTA+QE+++ PL
Sbjct: 215 HFSMQFLLRGLYAHNGLLFFHVVIENQTNIPCSVDFITFKVVDKKVAKRTAIQEQVLQPL 274
Query: 263 RAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKNGGRHQSFVIENEDLVRANTI 322
RA + + GK SERTVF + +F++P+ K L V L E+NGGR +F ++ EDL+RA I
Sbjct: 275 RACHQVAWIRGKTSERTVFALEQFSLPEDKQLEVTLYERNGGRTLTFCVQQEDLLRAERI 334
Query: 323 NELQVR 328
+ L++R
Sbjct: 335 DNLKLR 340
>gi|150004683|ref|YP_001299427.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
gi|149933107|gb|ABR39805.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
Length = 299
Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats.
Identities = 149/274 (54%), Positives = 200/274 (72%)
Query: 55 TRKLGFDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVR 114
TR +R++ PH +EVT+ KTVH++FP+EV+YVDLGS D+IA KA GAENV+R+KA V+
Sbjct: 26 TRIFPTNRIISPHKIEVTFQKTVHILFPSEVKYVDLGSFDIIADKATGAENVVRIKAAVK 85
Query: 115 NFPNETNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELG 174
F ETN SVIT DG FY+FNV Y EP L++EM D++ D + + LKELG
Sbjct: 86 GFEGETNFSVITADGCFYSFNVVYKDEPAWLSIEMEDWLRDNPEGGIAGDRMFVKLKELG 145
Query: 175 SESPMLVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPF 234
E+P++V IM +++K+NKR+++HIGCK++GIQ LLKG+Y +N LLY HT ++N S++ F
Sbjct: 146 GETPLVVNRIMYTLYKKNKRDIRHIGCKKYGIQTLLKGLYINNDLLYLHTSLRNSSDISF 205
Query: 235 DVDYITWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCL 294
D+DYI +KI+DKKVAKRTA+QE I P+R N T V GK + R +F + K T+PD K L
Sbjct: 206 DIDYIRFKIIDKKVAKRTAMQENFIEPVRTYNRLTTVDGKATVRNIFVLPKLTLPDDKLL 265
Query: 295 VVELNEKNGGRHQSFVIENEDLVRANTINELQVR 328
VVE+ EK G RHQSF IEN DLV A I+EL ++
Sbjct: 266 VVEVYEKGGARHQSFRIENTDLVAAKPISELHLK 299
>gi|29350188|ref|NP_813691.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29342100|gb|AAO79885.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 299
Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats.
Identities = 146/274 (53%), Positives = 199/274 (72%)
Query: 55 TRKLGFDRMVPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVR 114
T+ ++++ PH +EVT+ KTVH++FP+EV+YVDLGS D+IA KA GAENV+R+KA V+
Sbjct: 26 TKIFPTNQIISPHKIEVTFQKTVHILFPSEVKYVDLGSFDIIADKATGAENVVRIKAAVK 85
Query: 115 NFPNETNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELG 174
F ETN SVIT DG FY+FNV Y EP L++EM D++ D + + LKELG
Sbjct: 86 GFEGETNFSVITADGCFYSFNVVYKDEPAQLSIEMEDWLRDNPEGGIAGDRMFVKLKELG 145
Query: 175 SESPMLVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPF 234
E+P++V IM +++K+NKR+++HIGCK++GIQ LLKG+Y +N LLY HT ++N S++ F
Sbjct: 146 GETPLVVNRIMYTLYKKNKRDIRHIGCKKYGIQTLLKGLYINNDLLYLHTSLRNSSDISF 205
Query: 235 DVDYITWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCL 294
D+DYI +K+VDKKVAKRTA+QE I P+R N V GK + R +F + K T+PD K L
Sbjct: 206 DIDYIRFKVVDKKVAKRTAMQENFIEPVRTYNRLITVDGKATVRGIFVLPKLTLPDDKLL 265
Query: 295 VVELNEKNGGRHQSFVIENEDLVRANTINELQVR 328
VVE+ EK G RHQSF IEN DLV A I+EL ++
Sbjct: 266 VVEVYEKGGARHQSFRIENTDLVAAKPISELHLK 299
>gi|146300748|ref|YP_001195339.1| hypothetical protein Fjoh_2999 [Flavobacterium johnsoniae UW101]
gi|146155166|gb|ABQ06020.1| hypothetical protein Fjoh_2999 [Flavobacterium johnsoniae UW101]
Length = 286
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 112/251 (44%), Positives = 159/251 (63%), Gaps = 8/251 (3%)
Query: 69 LEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVITED 128
L +TYDKT H+IFP+E+RY DLGS L+A KA+ A NV+RVKA VR+F +TN+SVIT D
Sbjct: 38 LGITYDKTSHLIFPSEIRYADLGSGLLMAAKAEDANNVLRVKAAVRDFEQQTNLSVITTD 97
Query: 129 GSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPMLVRLIMKSI 188
G FY+F+V Y P +L + N +Q +ELG SP +MK I
Sbjct: 98 GRFYSFDVHYDPNPKILGYNI--------GANGNAGSQSTLFEELGESSPSTAESVMKRI 149
Query: 189 HKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIVDKKV 248
+ +KR ++HI + G ++ L GIY H+G YFH + N +NVP+ +D++ +KI D+
Sbjct: 150 YDNDKRVIRHIRTRNAGAEFRLNGIYVHDGKYYFHIALYNSTNVPYRIDFLNFKIADRNK 209
Query: 249 AKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKNGGRHQS 308
A+RTAVQ++ I PLR A + SER V+ + FT+ DGK L++E+ EKNGGR Q+
Sbjct: 210 ARRTAVQQKAISPLRVYRPAGEIKAGGSERCVYVLDLFTLTDGKLLLIEIYEKNGGRQQT 269
Query: 309 FVIENEDLVRA 319
I+N DL++A
Sbjct: 270 LKIKNSDLLKA 280
>gi|29611516|ref|NP_818969.1| TraN-like protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29335930|gb|AAO45314.1| TraN-like [Bacteroides thetaiotaomicron VPI-5482]
Length = 365
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 92/252 (36%), Positives = 134/252 (53%), Gaps = 21/252 (8%)
Query: 78 HVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKAT---VRNFPNETNMSVITEDGSFYTF 134
H+I P +V Y+D G + KA+ EN++R+ A V FP +TN+S+ TE G FYTF
Sbjct: 128 HLIAPEKVIYIDYGDTCIQVSKAENTENIVRMIAATGKVEEFPRQTNVSLATEGGKFYTF 187
Query: 135 NVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKE----LGSESPMLVRLIMKSIHK 190
NV Y +P E+ GE RP + L + G ++ R+
Sbjct: 188 NVDYRQQPEAFVYEI------GE--KRPEKKANVILTDNIIPAGERDQVMSRVY------ 233
Query: 191 QNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIVDKKVAK 250
KR + + G R I + + ++ ++ LL F EI+N+S +P+D+DYI + I+DKK AK
Sbjct: 234 NAKRGIFNKGIVRNKIVFSVNNLHIYDNLLLFTFEIENKSKLPYDIDYIRYYIIDKKTAK 293
Query: 251 RTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKNGGRHQSFV 310
TA QE L ++NY+ + G + V KFTIPD K +E+NEKNGGRH F
Sbjct: 294 LTASQEVDQQALFSENYSPRIEGNGRMKYVIAFDKFTIPDEKVFRIEINEKNGGRHVLFD 353
Query: 311 IENEDLVRANTI 322
+EN D+V I
Sbjct: 354 LENSDIVNVEDI 365
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 69 LEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVITED 128
+ V Y KT+H++FP+ V+Y + + + N++R+KA ++F +T +SV TE
Sbjct: 28 IAVNYSKTIHLVFPSAVKYNQAVTDFVAVDNPESVPNILRIKANRKSFSKQTTVSVATEG 87
Query: 129 GSFYTFNVKYA 139
G FY+FNV YA
Sbjct: 88 GFFYSFNVTYA 98
>gi|150003513|ref|YP_001298257.1| conserved hypothetical TraN-like protein found in conjugate
transposon [Bacteroides vulgatus ATCC 8482]
gi|149931937|gb|ABR38635.1| conserved hypothetical TraN-like protein found in conjugate
transposon [Bacteroides vulgatus ATCC 8482]
Length = 384
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 86/257 (33%), Positives = 139/257 (54%), Gaps = 13/257 (5%)
Query: 66 PHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVI 125
PH L V D+ + +IFPA + YVD GS ++ KA+G +N++ VKAT F +TN+S +
Sbjct: 119 PHTLPVGKDRQMFLIFPAGITYVDYGSTNVEVEKAEGVDNILAVKAT-GEFTEDTNISAV 177
Query: 126 TEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPMLVRLIM 185
E G FYTFN+ YA P E F+ D E R E +E SE +R
Sbjct: 178 VEGGKFYTFNLHYAPFP-----ERFSFVIDKEKTQRVAILDE---RERSSEQKERIR--- 226
Query: 186 KSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIVD 245
++I K+ ++ + K G+++ + I+ +L + N++ + + D++ + I D
Sbjct: 227 QAISKRIPLDLG-LKDKNAGMEFEVGNIFIDGDILLLRMTLTNRTQIGYTTDFMRFYIQD 285
Query: 246 KKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKNGGR 305
K+ K+TAVQ+ L A +Y +P +S M KFTIPD K L++E+ E+NGGR
Sbjct: 286 AKIHKKTAVQQIEQNILFAFDYPEEIPAHESRTFTVAMNKFTIPDKKRLIIEIQERNGGR 345
Query: 306 HQSFVIENEDLVRANTI 322
H + ++N+ L+ A +
Sbjct: 346 HFLYKLKNKSLLGAEEV 362
Score = 75.1 bits (183), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 64 VPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMS 123
+P L++ Y+KT+H+IFP EV+Y +G +I K +IR+KA NFP ET +S
Sbjct: 27 LPAVPLQIGYEKTLHLIFPTEVKYYSIGGDYVIGEKVGNCPEIIRLKAAEENFPGETTLS 86
Query: 124 VITEDGSFYTFNVKYAAEPL 143
V+T D FY++ + Y A P+
Sbjct: 87 VVTADTKFYSYAISYNAHPV 106
>gi|60680997|ref|YP_211141.1| conserved hypothetical TraN-like protein found in conjugate
transposon [Bacteroides fragilis NCTC 9343]
gi|60492431|emb|CAH07201.1| conserved hypothetical TraN-like protein found in conjugate
transposon [Bacteroides fragilis NCTC 9343]
Length = 384
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 79/257 (30%), Positives = 139/257 (54%), Gaps = 13/257 (5%)
Query: 66 PHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVI 125
PH L V +K + +IFPA + YVD GS ++ KA+G +N++ VKA V+ + +TN+SV+
Sbjct: 119 PHTLPVGKEKQLFLIFPAGITYVDYGSTNVEVDKAEGVDNILAVKA-VQPYKEDTNISVV 177
Query: 126 TEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPMLVRLIM 185
E G FYTF+++Y P E F+ D E + Q + + + S I
Sbjct: 178 LEGGKFYTFDLRYVPAP-----ERFSFVIDKE------DTQRVAILDEKERSYGQKERIR 226
Query: 186 KSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIVD 245
+++ K+ ++ + K G+++ + I+ +L + N++ + + D++ + I D
Sbjct: 227 EAVAKRTPLDLG-LRDKNSGMEFEVGNIFIDGDVLLLRMTLTNRTQIGYTTDFMRFYIQD 285
Query: 246 KKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKNGGR 305
K+ K+TAVQ+ L +Y +P +S M KFTIPD K L++E+ E+NGGR
Sbjct: 286 AKIRKKTAVQQLEQNILFTFDYPEEIPAHESRTFTVAMNKFTIPDKKRLIIEIQERNGGR 345
Query: 306 HQSFVIENEDLVRANTI 322
H + ++N+ L+ A +
Sbjct: 346 HFLYKLKNKSLLTAEEV 362
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 69 LEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVITED 128
L++ Y+KT+H+IFP EV+Y +G +I K +IR+KA NFP ET +SV+T D
Sbjct: 32 LQIGYEKTLHLIFPTEVKYYSIGGDYVIGEKVVNCPGIIRLKAAEENFPGETTLSVVTAD 91
Query: 129 GSFYTFNVKYAAEP 142
FY++++ Y A P
Sbjct: 92 TKFYSYSISYNAHP 105
>gi|146301280|ref|YP_001195871.1| hypothetical protein Fjoh_3538 [Flavobacterium johnsoniae UW101]
gi|146155698|gb|ABQ06552.1| hypothetical protein Fjoh_3538 [Flavobacterium johnsoniae UW101]
Length = 279
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 16/247 (6%)
Query: 69 LEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVITED 128
L + Y KT ++FP ++ +D GSPD+I KA G EN++ +KA +NF +TN+++IT D
Sbjct: 38 LNIGYSKTTSLVFPYAIKSIDKGSPDIIMQKAKGVENILLLKANRQNFA-QTNLTIITAD 96
Query: 129 GSFYTFNVKYAAEPLLLNVEMCDF--IHDGEAVNRPNNAQEIYLKELGSESPMLVRLIMK 186
Y F + Y + LNV + ++D ++ N Q+ +
Sbjct: 97 SRLYVFVLNYNDDCPDLNVNADNLAVVNDDILFSKENENQKKIEQ-------------FA 143
Query: 187 SIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIVDK 246
++ K+++ I +F I+ + GI+ H ++YF I N S + +++D + + I DK
Sbjct: 144 ALALAKKKKITGIQRSKFDIKLSVSGIFIHEDVMYFRLVIDNNSKINYELDQLRFFIRDK 203
Query: 247 KVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKNGGRH 306
K AKRTA QE I+PL N ++ K V+ M K IP+ K L ++L EKNG R
Sbjct: 204 KKAKRTASQEIEIIPLYDSNSRNVIAAKSEWTAVYAMPKVIIPEKKYLTIQLIEKNGERQ 263
Query: 307 QSFVIEN 313
I N
Sbjct: 264 LEVDINN 270
>gi|146302085|ref|YP_001196676.1| hypothetical protein Fjoh_4350 [Flavobacterium johnsoniae UW101]
gi|146156503|gb|ABQ07357.1| hypothetical protein Fjoh_4350 [Flavobacterium johnsoniae UW101]
Length = 287
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 74/271 (27%), Positives = 131/271 (48%), Gaps = 40/271 (14%)
Query: 69 LEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVITED 128
L++ + KT +IFP ++ +D GS +++ KA G EN++ VKA ++F +TN++V+T D
Sbjct: 38 LKIGFSKTTSIIFPYTIKSIDKGSAEVLVQKAKGVENILLVKAAKQHF-FQTNLTVVTSD 96
Query: 129 GSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPMLVRLIMKSI 188
G Y F + Y LN + + R ++ S+
Sbjct: 97 GKLYVFVLNYDDSCPDLNFK-------------------------AENAVAASRDVLFSL 131
Query: 189 HKQNKREVKHIGC--------------KRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPF 234
+N++ ++ ++ I+ + GI+ +LY +N+S + +
Sbjct: 132 ENENQKRIEQCALAAYSKKKKISGLKKSKYQIRLEVNGIFIQQDVLYLRIVFENKSKINY 191
Query: 235 DVDYITWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCL 294
D+D + + I D+K +KRTA QE + PL + ++++P K V+ + KFTIP+ K L
Sbjct: 192 DIDQLRFFIRDQKKSKRTASQEIELQPLYVTSSSSVIPYKSEIIKVYALEKFTIPENKYL 251
Query: 295 VVELNEKNGGRHQSFVIENEDLVRANTINEL 325
+++ EKNGGRH I N + I EL
Sbjct: 252 TLQMIEKNGGRHLEVDINNNLTDKVIPITEL 282
>gi|52421231|ref|YP_087143.1| conserved hypothetical protein found in conjugate transposon TraN
[Bacteroides fragilis YCH46]
gi|52218752|dbj|BAD51344.1| conserved hypothetical protein found in conjugate transposon TraN
[Bacteroides fragilis YCH46]
Length = 276
Score = 77.4 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 28/274 (10%)
Query: 56 RKLGFDRMVP--PHGLEVTY---DKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVK 110
+ L DRM P L+V Y D + H I +++YVD+ D++ +N +RVK
Sbjct: 20 QNLPIDRMADANPEQLKVIYVNKDVSTHFIAMEDIKYVDISISDIVGDIP--VDNSLRVK 77
Query: 111 ATVRNFPNETNMSVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYL 170
E VIT + F V+Y L V D +A +R N +
Sbjct: 78 PI-----KEGASGVITI--TTERFLVQY------LLVYTSDL---SKACSRFNIPYSDVV 121
Query: 171 KELGSESPMLVRLIMKSIHKQ--NKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKN 228
+ E+ M + ++ +K + + K ++ +L IYT + + + N
Sbjct: 122 SYMNPETNMTKAEMYDYAYRMFISKNKFFDVSTKGNLMKIILNNIYTMDKYFFIDISMIN 181
Query: 229 QSNVPFDVDYITWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTI 288
+SN+ +D+D I +KI DKK K T Q I+PL N AT KK R +F KFT
Sbjct: 182 KSNIRYDIDQIRFKIEDKKQTKATNFQSIEIMPLMQVNNATFF--KKKYRNIFVFEKFTF 239
Query: 289 PDGKCLVVELNEKN-GGRHQSFVIENEDLVRANT 321
PD K L +E++EK GR + I+ D++ A++
Sbjct: 240 PDEKVLTIEISEKQISGRTITLRIDYADVLHADS 273
>gi|120435715|ref|YP_861401.1| TraN-like secreted protein [Gramella forsetii KT0803]
gi|117577865|emb|CAL66334.1| TraN-like secreted protein [Gramella forsetii KT0803]
Length = 286
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 45/254 (17%)
Query: 80 IFPAEVRYVDLGSPDLIAGKADGAENVI--------RVKATVRNFPNE-TNMSVITEDGS 130
I+ + + V L PD I G+EN I + ++ P E +N+ +I+ +GS
Sbjct: 37 IYANDTKNVALFFPDPIRQGITGSENFIFTYNRDKGQYFGLLQATPGEDSNLLIISMNGS 96
Query: 131 FYTFNVKYAAE------------------PLLLNVEMCDFIHDGEAVNRPNNAQEIYLKE 172
Y++ VKY + P++ N E D +V N ++ +Y K+
Sbjct: 97 IYSYIVKYKEQLSKLNYFVPRTKSIGNEKPVVKNTEPND------SVGYKNVSRTVYYKK 150
Query: 173 LGSESPMLVRLIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNV 232
+ +L R + I K KR GI ++ I LYF EI+N S++
Sbjct: 151 FSNF--LLAR--TQKIGKIKKRSD--------GIVLRVENIVFDRSSLYFVIEIENSSSL 198
Query: 233 PFDVDYITWKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGK 292
+D++++ + KK KR ++Q+ P+ + GK+ +R VF + KF++ DGK
Sbjct: 199 DYDLNFLKFYTETKKQGKRKSIQKLEKQPVYTHQLPFKITGKEMKRMVFVLPKFSLADGK 258
Query: 293 CLVVELNEKNGGRH 306
LV+ELNE+NG R+
Sbjct: 259 RLVIELNEQNGERN 272
>gi|60650178|ref|YP_209731.1| putative plasmid transfer protein [Bacteroides fragilis NCTC 9343]
gi|60495258|emb|CAH05752.1| putative plasmid transfer protein [Bacteroides fragilis NCTC 9343]
Length = 279
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 26/265 (9%)
Query: 66 PHGLEVTY---DKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNM 122
P L+V Y D + H I +++YVD+ D++ G N +R+K T + +
Sbjct: 35 PEELKVIYINKDVSTHFIAMEDIKYVDISVNDIVGDIPTG--NSLRIKPTKEG---ASGV 89
Query: 123 SVITEDGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPMLVR 182
I + F + + Y+++ +A R N + E +
Sbjct: 90 ITIVTERFFVQYMLVYSSDL-------------AKAYTRFNIPYADLRSYMNPEVNLTKA 136
Query: 183 LIMKSIHKQ--NKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYIT 240
+ H+ +K + + ++ +L IYT + + + N++ + +D+D I
Sbjct: 137 QMYDYAHRMFISKNKFYDVSSTSNLMKIVLNNIYTLDKYFFIDISMINKTKIRYDIDQIR 196
Query: 241 WKIVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
+KI DKK K T Q ILPL N + KK+ R +F KFT PD K L +E++E
Sbjct: 197 FKIEDKKQTKATNFQSIEILPLMQVNKNLVF--KKNYRNIFVFEKFTFPDEKVLTIEISE 254
Query: 301 KN-GGRHQSFVIENEDLVRANTINE 324
K GR + I+ D++ A+ E
Sbjct: 255 KQISGRTITLRIDYADILHADAFTE 279
>gi|145308109|gb|ABP57295.1| hypothetical protein bst022 [Bacteroides uniformis]
Length = 285
Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 68/260 (26%), Positives = 119/260 (45%), Gaps = 22/260 (8%)
Query: 70 EVTYDKTVHVIFPAE--VRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVITE 127
++T ++ V + A VR VD+ + ++ + +N++R+K + ++++T
Sbjct: 35 QLTVNEQVTTVITASEPVRMVDISTDKVVGDQP--LDNIVRLKPKEAGHEDGEVIAIVTV 92
Query: 128 DGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPMLVRLIMKS 187
Y +YA L+ + + + D E + NA Y S S + +
Sbjct: 93 ITERY--RTQYA---LVYTTRLKEAVTDKEILPHERNA---YNNPAVSMSTAEMTRFARR 144
Query: 188 IHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIVDKK 247
I R ++++ K + L IY+ + I+N++N+ FD+D I K+VDKK
Sbjct: 145 IWNSPAR-IRNVATKAHRMVMRLNNIYSVGDYFFIDFSIENKTNIRFDIDEIRVKLVDKK 203
Query: 248 VAKRTAVQERIILPLRAQNYATLVPGKK---SERTVFTMAKFTIPDGKCLVVELNEKN-G 303
+AK T Q + P L PGK R V + K T P+ K L VE+ EK
Sbjct: 204 LAKATNAQTIELTPA-----MILEPGKTFRHGYRNVLVIKKMTFPNDKLLTVEMTEKQIS 258
Query: 304 GRHQSFVIENEDLVRANTIN 323
GR+ S I+ ED++ A++ N
Sbjct: 259 GRNISLNIDYEDVLSADSFN 278
>gi|53714103|ref|YP_100095.1| conserved protein found in conjugate transposon TraN [Bacteroides
fragilis YCH46]
gi|52216968|dbj|BAD49561.1| conserved protein found in conjugate transposon TraN [Bacteroides
fragilis YCH46]
Length = 281
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/264 (25%), Positives = 124/264 (46%), Gaps = 30/264 (11%)
Query: 70 EVTYDKTVHVIFPAE--VRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVITE 127
++T ++ + + A VR+VD+ S D +AG +N+IR+K + ++++T
Sbjct: 31 QLTVNEQITTVITASEPVRFVDI-STDKVAGDQP-IDNIIRLKPKESGHEDGEILAIVTI 88
Query: 128 DGSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPMLVRLIMKS 187
Y +YA L+ M + + D +EI L+E + + V +
Sbjct: 89 VTERY--RTQYA---LIYTTRMKEAVTD----------KEILLQERNAYNNPAVSMSAAD 133
Query: 188 IHKQNKR------EVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITW 241
+ +R +++++ K + L IY+ + I+N++N+ FD+D I
Sbjct: 134 MTHHARRIWNSPAKIRNVATKAHRMVMRLNNIYSVGDYFFIDFSIENKTNIRFDIDEIRI 193
Query: 242 KIVDKKVAKRTAVQERIILP-LRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNE 300
K+ DKK+AK T Q + P L ++ T G R V + K T P+ K L +E+ E
Sbjct: 194 KLTDKKLAKATNAQTIELTPALVLESGKTFRHGY---RNVIVVKKMTFPNDKLLTIEMTE 250
Query: 301 KN-GGRHQSFVIENEDLVRANTIN 323
K GR+ S I+ ED++ A++ +
Sbjct: 251 KQISGRNISLNIDYEDILAADSFH 274
>gi|156107166|gb|EDO08911.1| hypothetical protein BACOVA_04768 [Bacteroides ovatus ATCC 8483]
Length = 283
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 65/262 (24%), Positives = 118/262 (45%), Gaps = 26/262 (9%)
Query: 69 LEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNETNMSVITED 128
L V T + VR+VD+ S D +AG EN+IR+K + ++++T
Sbjct: 34 LTVNEQVTTVITASEPVRFVDI-STDKVAGDQP-IENIIRLKPKETGHEDGEVLAIVTIV 91
Query: 129 GSFYTFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPMLVRLIMKSI 188
Y +YA L+ + + + D +EI L+E + + V + +
Sbjct: 92 TERY--RTQYA---LIYTTRISEAVAD----------KEIQLQEREAYNNPTVSMSTADM 136
Query: 189 HKQNKR------EVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWK 242
+ +R +++++ K + L IY+ + I+N++N+ FD+D I K
Sbjct: 137 VRFARRVWNSPAKIRNVATKAHRMVMRLNNIYSVGDYFFIDFSIENKTNIRFDIDEIRVK 196
Query: 243 IVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKN 302
+ DKK++K T Q + P + K R V + K T P+ K L +E+ E+
Sbjct: 197 LSDKKLSKATNAQTIELTPALVLEHGKTF--KHGYRNVIVVKKMTFPNDKLLTIEMTEQQ 254
Query: 303 -GGRHQSFVIENEDLVRANTIN 323
GR+ S I+ ED++ A++ N
Sbjct: 255 ISGRNISLNIDYEDVLSADSFN 276
>gi|150005885|ref|YP_001300629.1| conserved hypothetical protein found in conjugate transposon TraN
[Bacteroides vulgatus ATCC 8482]
gi|149934309|gb|ABR41007.1| conserved hypothetical protein found in conjugate transposon TraN
[Bacteroides vulgatus ATCC 8482]
Length = 290
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 113/259 (43%), Gaps = 24/259 (9%)
Query: 71 VTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVR------NFPNETNMSV 124
V + T H++ P ++ VD+ + ++ + A+N++R+K + +F +
Sbjct: 27 VNCEVTTHIVMPENIKLVDISTTKIMGNQC--ADNMVRIKPYLEQDSIKASFDENELLGT 84
Query: 125 ITEDGSFY--TFNVKYAAEPLLLNVEMCDFIHDGEAVNRPNNAQEIYLKELGSESPMLVR 182
IT G + + V Y P + D ++ P E+ +VR
Sbjct: 85 ITLVGERHIAQYEVVYTHYPSMAASIFEVAYSDTQSYINP---------EVSMPKAEMVR 135
Query: 183 LIMKSIHKQNKREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWK 242
+KR+ + G++ ++ IYT + ++N++ + +D++ + K
Sbjct: 136 YAWAVY--GSKRKYNQVVSNAHGMKAIVNNIYTIGDYFFIDYSLQNKTKIAYDIEELRVK 193
Query: 243 IVDKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKN 302
+ DKK K T Q + P+ + N + KK+ R V + K T PD K L +E++E
Sbjct: 194 LTDKKETKATNSQTIELTPVYSLN--PVKKFKKNYRNVLVIEKLTFPDEKVLRLEISENQ 251
Query: 303 -GGRHQSFVIENEDLVRAN 320
GR + IE ED++ A+
Sbjct: 252 ISGRVITLTIEYEDILNAD 270
>gi|156110065|gb|EDO11810.1| hypothetical protein BACOVA_02304 [Bacteroides ovatus ATCC 8483]
Length = 298
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Query: 194 REVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIVDKKVAKRTA 253
R+ I + G++ ++ IY + ++N++ + +D++ + K+ DKK K T
Sbjct: 146 RKYNQIVSRAHGMKAVVNNIYAVGDYFFIDYSLQNKTKIAYDIEELRVKLTDKKETKATN 205
Query: 254 VQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKN-GGRHQSFVIE 312
Q + P+ + N+ KKS R V + K T PD K L +E++E GR + IE
Sbjct: 206 SQTIELSPVFSLNHVRKF--KKSYRNVLVLPKLTFPDEKVLRLEISENQISGRVITLTIE 263
Query: 313 NEDLVRAN 320
ED++ A+
Sbjct: 264 YEDILHAD 271
>gi|86141449|ref|ZP_01059995.1| conserved protein found in conjugate transposon TraN
[Flavobacterium sp. MED217]
gi|85832008|gb|EAQ50463.1| conserved protein found in conjugate transposon TraN
[Leeuwenhoekiella blandensis MED217]
Length = 284
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 109/242 (45%), Gaps = 22/242 (9%)
Query: 75 KTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFP-NETNMSVITEDGSFYT 133
K V + FP +R GS + + E ++ P E+N+ V+ +GS ++
Sbjct: 41 KNVALFFPEPIRQGITGSDNFVFTYNREKEQYF---GLLQAKPGKESNLLVVNRNGSVFS 97
Query: 134 FNVKYAAEPLLLNVEMCDFIHDGEAV-NRPNNAQEIYLKELGSESPMLVRLIMKSIHKQN 192
+ V+Y + LN FI ++ N + L E E R+ ++ + Q
Sbjct: 98 YIVRYKKQLSKLNY----FIPISSSIGNEKPTVTDSILAESSEE-----RVDNRTYYYQK 148
Query: 193 --------KREVKHIGCKRFGIQYLLKGIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIV 244
K+ + I + GI ++ I LYF +I+N S + +D++++ I
Sbjct: 149 FCSYLLNRKQRIGRIKKRNEGIVLSIENIVFDKEELYFVIQIENNSTLDYDLNFLNLSIE 208
Query: 245 DKKVAKRTAVQERIILPLRAQNYATLVPGKKSERTVFTMAKFTIPDGKCLVVELNEKNGG 304
++ KR ++Q P+ N + + ++ R V+ + KF++ + + ++ELNEK+G
Sbjct: 209 TRQKGKRKSLQRLFQEPIYKHNLPSKIAEGETVRFVYVLPKFSLSNDRRAILELNEKDGE 268
Query: 305 RH 306
R+
Sbjct: 269 RN 270
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.319 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,162,717,247
Number of Sequences: 5470121
Number of extensions: 47965098
Number of successful extensions: 118407
Number of sequences better than 1.0e-05: 37
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 118336
Number of HSP's gapped (non-prelim): 45
length of query: 328
length of database: 1,894,087,724
effective HSP length: 133
effective length of query: 195
effective length of database: 1,166,561,631
effective search space: 227479518045
effective search space used: 227479518045
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)