BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query               position in query    matching  repeat        position in  repeat
score  div. del. ins.  sequence            begin  end (left)    repeat    class/family  begin  end (left)  ID

  189   0.0  0.0  0.0  SSH1C11.SEQ(1>346)    227  247   (73) +  (TTTTTG)n Simple_repeat     4   24    (0)      

Alignments:
189  0.00  0.00  0.00  SSH1C11.SEQ(1>346)  227  247  (73)  C  (CAAAAA)n#Simple_repeat  (156)  24  4  5

  SSH1C11.SEQ(1>3    227 TTTTTGTTTTTGTTTTTGTTT 247    
                                              
C (CAAAAA)n#Simpl     24 TTTTTGTTTTTGTTTTTGTTT 4      

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 21), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>SSH1C11.SEQ(1>346)
HSCGCGGCCGAGGTACATGCCCGACGAGGCCAGGCTCCTCAAGGCCTACG
GCGAAGCTTCCTGACAGCACCAGGCTCAACGAGGGCATCGGCGCTGGCCT
TGATGAGGAGGAGGATGGGGCCGGAAATGATTATATCGAGTTCGAGGATG
AGGATATTGATGAGATTTGAAGGAAGAGAAAAAAAAGTTAGGGTTTTGGT
TTTGGTTTGTGTTGCTGATGCCTCTTNNNNNNNNNNNNNNNNNNNNNGAG
ATTATATATGAAATTGTTATGATTTGGTGATGGATTCACTTTATGGTATG
TGATGGTGTTGCCTCTGTGT

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       320 bp
GC level:         46.25 %
bases masked:        21 bp (  6.56 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           21 bp     6.56 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  SSH1C11.SEQ(1>346)
        (320 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 10 Sequences     : less than 10 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 2285 577 |=========================================================
   6310 1708 406 |========================================
   3980 1302 290 |=============================
   2510 1012 295 |=============================
   1580  717 221 |======================
   1000  496 120 |============
    631  376 113 |===========
    398  263  82 |========
    251  181  36 |===
    158  145  36 |===
    100  109  32 |===
   63.1   77  16 |=
   39.8   61  22 |==
   25.1   39  13 |=
   15.8   26   1 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 25  <<<<<<<<<<<<<<<<<
   10.0   25   6 |:
   6.31   19   5 |:
   3.98   14   2 |:
   2.51   12   4 |:
   1.58    8   2 |:
   1.00    6   0 |
   0.63    6   2 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|3024017|sp|P56331|IF1A_ONOVIEUKARYOTIC TRANSLATION... +3   149  1.6e-15   2
gi|4587600|gb|AAD25828.1|AC006951_7(AC006951) putativ... +3   125  5.1e-13   2
gi|626041|pir||A53045translation initiation factor eI... +3   112  1.4e-11   2
gi|1352427|sp|P47815|IF1A_WHEATEUKARYOTIC TRANSLATION... +3   112  1.4e-11   2
gi|2935229|gb|AAD09732.1|(AF030154) 33 kDa protein [b... +3    74  0.36      1
gi|7107359|gb|AAF36387.1|AF220656_1(AF220656) apoptos... -3    67  0.38      1
gi|3264536|emb|CAA17281.1|(AL021920) dJ163M9.1 [Homo ... +3    54  0.65      2
gi|2494295|sp|Q60872|IF1A_MOUSEEUKARYOTIC TRANSLATION... +2    63  0.72      1
gi|3183008|sp|P70005|GA6B_XENLATRANSCRIPTION FACTOR X... -3    71  0.80      1
gi|7293488|gb|AAF48863.1|(AE003509) CG15040 gene prod... -3    78  0.83      1
gi|4758254ref|NP_004672.1| eukaryotic translation ini... +3    53  0.87      2
gi|6572169|emb|CAB62988.1|(AL022312) dJ1104E15.4 (cal... -2    61  0.87      1
gi|6721169|gb|AAF26797.1|AC016829_21(AC016829) hypoth... -3    72  0.93      1
gi|6456821|emb|CAB61485.1|(AL034420) dJ1112F19.1 (nov... -2    73  0.96      1
gi|7298879|gb|AAF54085.1|(AE003674) bcd gene product ... -3    58  0.99      1
gi|6323916ref|NP_013987.1| Translation initiation fac... +3    57  0.995     2
gi|7485794|pir||T06064hypothetical protein F19H22.140... -2    70  0.996     1
gi|409852|gb|AAD12771.1|(U01782) unknown [Mycoplasma ... -1    64  0.997     1
gi|2494686|sp|Q91678|GA6A_XENLATRANSCRIPTION FACTOR X... -3    70  0.998     1
gi|2498907|sp|Q39618|SFAS_CHLRESF-ASSEMBLIN >gi|74843... +3    69  0.998     1
gi|156990|gb|AAA28385.1|(M14549) segmentation protein... -3    56  0.9991    1
gi|2961608|gb|AAC05780.1|(AF051848) eukaryotic transl... +3    56  0.9991    1
gi|1304441|gb|AAB26950.1|(U27489) Rsp40 [Pseudorabies... +3    61  0.9998    1
gi|630795|pir||S45069recombinant antigenic polypeptid... +3    55  0.9999    1
gi|7292683|gb|AAF48080.1|(AE003487) CG2446 gene produ... +3    70  0.99992   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|3024017             |       ___________________                        
gi|4587600             |       ___________________                        
gi|626041              |       ___________________                        
gi|1352427             |       ___________________                        
gi|2935229             |     _____________________                        
gi|3264536             |       ___________________                        
gi|2494295             |  ________________________                        
gi|4758254             |        __________________                        
gi|6323916             |       ___________________                        
gi|2498907             |__________________                                
gi|2961608             |     _____________________                        
gi|1304441             |           _______________                        
gi|630795              |    __________________                            
gi|7292683             |________________________                          
                        __________________________________________________
Query sequence:        |        |         |        |        |         |   | 107
                       0       20        40       60       80       100


Locus_ID                Frame 2 Hits
gi|3024017             | ________                                         
gi|4587600             | ________                                         
gi|626041              | ________                                         
gi|1352427             | ________                                         
gi|3264536             | ________                                         
gi|2494295             | ________                                         
gi|4758254             | _______                                          
gi|6323916             | ________                                         
                        __________________________________________________
Query sequence:        |        |         |        |        |         |   | 107
                       0       20        40       60       80       100


Locus_ID                Frame -1 Hits
gi|409852              |               __________________                 
                        __________________________________________________
Query sequence:        |        |         |        |        |         |   | 107
                       0       20        40       60       80       100


Locus_ID                Frame -2 Hits
gi|6572169             |___________________                               
gi|6456821             | __________________                               
gi|7485794             |                                                  
                        __________________________________________________
Query sequence:        |        |         |        |        |         |   | 107
                       0       20        40       60       80       100


Locus_ID                Frame -3 Hits
gi|7107359             |            ______________                        
gi|3183008             |                                                  
gi|7293488             |              ___________                         
gi|6721169             |               _________________                  
gi|7298879             |            _________________                     
gi|2494686             |                                                  
gi|156990              |            ______________                        
                        __________________________________________________
Query sequence:        |        |         |        |        |         |   | 107
                       0       20        40       60       80       100


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|3024017|sp|P56331|IF1A_ONOVI  EUKARYOTIC TRANSLATION INITIATION FACTOR 1A
            (EIF-1A) (EIF-4C) >gi|7488758|pir||T08000 translation initiation
            factor eIF-1A - common sainfoin >gi|2565421|gb|AAB81996.1|
            (AF026804) eukaryotic translation initiation factor eIF-1A
            [Onobrychis viciifolia]
            Length = 145

Frame  3 hits (HSPs):                                       ______________
Frame  2 hits (HSPs):                                   _____             
Annotated Domains:         ______________________________________________ 
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100
__________________

Annotated Domains:
   BLOCKS               BL01262: Eukaryotic initiation factor 1A 32..86
   PFAM                 eIF-1a: Eukaryotic initiation factor 1A  12..112
   PRODOM               PD005579: IF1A(10)                       28..107
   PRODOM               PD062620: IF1A_ONOVI                     109..143
   PROSITE              IF1A: Eukaryotic initiation factor 1A si 41..63
__________________


  Plus Strand HSPs:

 Score = 149 (52.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 32/38 (84%), Positives = 35/38 (92%), Frame = +3

Query:    54 KLPDSTRLNEGIGAG-LDEEEDGAGNDYIEFEDEDIDEI 167
             +LPD+TRLNEGIGAG LDEE D A NDYIEFEDEDID+I
Sbjct:   108 ELPDNTRLNEGIGAGGLDEEMDTA-NDYIEFEDEDIDKI 145

 Score = 68 (23.9 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 13/15 (86%), Positives = 14/15 (93%), Frame = +2

Query:    11 RYMPDEARLLKAYGE 55
             + MPDEARLLKAYGE
Sbjct:    94 KLMPDEARLLKAYGE 108


 >gi|4587600|gb|AAD25828.1|AC006951_7  (AC006951) putative translation initiation
            factor eIF-1A [Arabidopsis thaliana]
            Length = 145

Frame  3 hits (HSPs):                                       ______________
Frame  2 hits (HSPs):                                   _____             
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100

  Plus Strand HSPs:

 Score = 125 (44.0 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
 Identities = 22/38 (57%), Positives = 31/38 (81%), Frame = +3

Query:    54 KLPDSTRLNEGIGAGLDEEEDGAGNDYIEFEDEDIDEI 167
             +LP++TRLNEGI   L++++D   +DY+EFEDEDID I
Sbjct:   108 ELPENTRLNEGIVGDLEDDDDNNDDDYVEFEDEDIDRI 145

 Score = 68 (23.9 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
 Identities = 13/15 (86%), Positives = 14/15 (93%), Frame = +2

Query:    11 RYMPDEARLLKAYGE 55
             +YM DEARLLKAYGE
Sbjct:    94 KYMSDEARLLKAYGE 108


 >gi|626041|pir||A53045  translation initiation factor eIF-1A - wheat (fragment)
            Length = 143

Frame  3 hits (HSPs):                                        _____________
Frame  2 hits (HSPs):                                   ______            
Annotated Domains:                   _________                            
                        __________________________________________________
Database sequence:     |                 |                |               | 143
                       0                50              100
__________________

Annotated Domains:
   PROSITE              IF1A: Eukaryotic initiation factor 1A si 40..62
__________________


  Plus Strand HSPs:

 Score = 112 (39.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 23/38 (60%), Positives = 31/38 (81%), Frame = +3

Query:    54 KLPDSTRLNEGIGAGLDEEEDGAGN-DYIEFEDEDIDEI 167
             +LPD+ RLNEG+   +D  E+G G+ DYI+FEDEDID+I
Sbjct:   107 ELPDTVRLNEGVD--VDGPEEGEGDSDYIQFEDEDIDKI 143

 Score = 67 (23.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 13/15 (86%), Positives = 14/15 (93%), Frame = +2

Query:    11 RYMPDEARLLKAYGE 55
             +YM DEARLLKAYGE
Sbjct:    93 KYMNDEARLLKAYGE 107


 >gi|1352427|sp|P47815|IF1A_WHEAT  EUKARYOTIC TRANSLATION INITIATION FACTOR 1A
            (EIF-1A) (EIF-4C)
            Length = 144

Frame  3 hits (HSPs):                                        _____________
Frame  2 hits (HSPs):                                   ______            
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100
__________________

Annotated Domains:
   BLOCKS               BL01262: Eukaryotic initiation factor 1A 32..86
   DOMO                 DM03581:                                 1..121
   PFAM                 eIF-1a: Eukaryotic initiation factor 1A  12..112
   PRODOM               PD005579: IF1A(10)                       28..107
   PRODOM               PD062619: IF1A_WHEAT                     109..142
   PROSITE              IF1A: Eukaryotic initiation factor 1A si 41..63
__________________


  Plus Strand HSPs:

 Score = 112 (39.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 23/38 (60%), Positives = 31/38 (81%), Frame = +3

Query:    54 KLPDSTRLNEGIGAGLDEEEDGAGN-DYIEFEDEDIDEI 167
             +LPD+ RLNEG+   +D  E+G G+ DYI+FEDEDID+I
Sbjct:   108 ELPDTVRLNEGVD--VDGPEEGEGDSDYIQFEDEDIDKI 144

 Score = 67 (23.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 13/15 (86%), Positives = 14/15 (93%), Frame = +2

Query:    11 RYMPDEARLLKAYGE 55
             +YM DEARLLKAYGE
Sbjct:    94 KYMNDEARLLKAYGE 108


 >gi|2935229|gb|AAD09732.1|  (AF030154) 33 kDa protein [bovine adenovirus type 3]
            Length = 274

Frame  3 hits (HSPs):          _________                                  
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 274
                       0       50       100      150      200      250

  Plus Strand HSPs:

 Score = 74 (26.0 bits), Expect = 0.45, P = 0.36
 Identities = 19/43 (44%), Positives = 26/43 (60%), Frame = +3

Query:    36 SSRPTAKLPDSTRLNEGIGAGLDEEEDG--AGNDYIEFEDEDIDE 164
             S  PTA L D +   EG    L +EEDG    +D+ +F DED++E
Sbjct:    42 SLNPTAALEDISEGEEGFP--LTDEEDGDTLESDFSDFTDEDVEE 84


 >gi|7107359|gb|AAF36387.1|AF220656_1  (AF220656) apoptosis-associated nuclear
            protein PHLDA1 [Homo sapiens]
            Length = 52

Frame -3 hits (HSPs):     _______________________________________         
                        __________________________________________________
Database sequence:     |                  |                  |            | 52
                       0                 20                 40

  Minus Strand HSPs:

 Score = 67 (23.6 bits), Expect = 0.48, P = 0.38
 Identities = 11/24 (45%), Positives = 15/24 (62%), Frame = -3

Query:   162 HQYPHPRTR-YNHFRPHPPPHQGQ 94
             H +PHP +  ++H  PHP PH  Q
Sbjct:     4 HPHPHPHSHPHSHPHPHPHPHPHQ 27

 Score = 67 (23.6 bits), Expect = 0.48, P = 0.38
 Identities = 11/27 (40%), Positives = 15/27 (55%), Frame = -3

Query:   162 HQYPHPRTRYNHFRPHPPPHQGQRRCP 82
             H +PHP + + H  PHP PH    + P
Sbjct:     4 HPHPHPHS-HPHSHPHPHPHPHPHQIP 29

 Score = 59 (20.8 bits), Expect = 3.4, P = 0.97
 Identities = 10/22 (45%), Positives = 12/22 (54%), Frame = -3

Query:   165 SHQYPHPRTRYNHF-RPHPPPH 103
             SH +PHP    +    PHP PH
Sbjct:    15 SHPHPHPHPHPHQIPHPHPQPH 36

 Score = 57 (20.1 bits), Expect = 5.5, P = 1.0
 Identities = 12/29 (41%), Positives = 14/29 (48%), Frame = -3

Query:   165 SHQYPHPRTRYNHF-RPHPPPHQ---GQR 91
             SH +PHP    +    PHP PH    G R
Sbjct:    15 SHPHPHPHPHPHQIPHPHPQPHSQPHGHR 43


 >gi|3264536|emb|CAA17281.1|  (AL021920) dJ163M9.1 [Homo sapiens]
            Length = 144

Frame  3 hits (HSPs):                                        _____________
Frame  2 hits (HSPs):                                   ______            
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100

  Plus Strand HSPs:

 Score = 54 (19.0 bits), Expect = 1.1, Sum P(2) = 0.65
 Identities = 17/38 (44%), Positives = 24/38 (63%), Frame = +3

Query:    54 KLPDSTRLNEG--IGAGLDEEE--DGAGNDYIEFEDEDIDEI 167
             +LP+  ++NE    G G D+E   D  G+D     DEDID+I
Sbjct:   108 ELPEHAKINETDTFGPGDDDEIQFDDIGDD-----DEDIDDI 144

 Score = 51 (18.0 bits), Expect = 1.1, Sum P(2) = 0.65
 Identities = 10/15 (66%), Positives = 12/15 (80%), Frame = +2

Query:    11 RYMPDEARLLKAYGE 55
             +Y  DEAR L+AYGE
Sbjct:    94 KYNADEARSLQAYGE 108


 >gi|2494295|sp|Q60872|IF1A_MOUSE  EUKARYOTIC TRANSLATION INITIATION FACTOR 1A
            (EIF-1A) (EIF-4C) >gi|887854|gb|AAB05664.1| (U28419) translation
            initiation factor eif-4C homolog [Mus musculus]
            Length = 67

Frame  3 hits (HSPs):                 ____________________________________
Frame  2 hits (HSPs):              ____________                           
                        __________________________________________________
Database sequence:     |              |              |              |     | 67
                       0             20             40             60

  Plus Strand HSPs:

 Score = 63 (22.2 bits), Expect = 1.3, P = 0.72
 Identities = 12/15 (80%), Positives = 13/15 (86%), Frame = +2

Query:    11 RYMPDEARLLKAYGE 55
             +Y PDEAR LKAYGE
Sbjct:    17 KYNPDEARSLKAYGE 31

 Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
 Identities = 15/49 (30%), Positives = 27/49 (55%), Frame = +3

Query:    21 PTRPGSSRPTAKLPDSTRLNEGIGAGLDEEEDGAGNDYIEFEDEDIDEI 167
             P    S +   +LP+  ++NE    G  ++++   +D  E +DEDID+I
Sbjct:    20 PDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGE-DDEDIDDI 67


 >gi|3183008|sp|P70005|GA6B_XENLA  TRANSCRIPTION FACTOR XGATA-6B (GATA BINDING
            FACTOR-6B) >gi|1621281|emb|CAA70088.1| (Y08865) GATA-6 protein
            [Xenopus laevis]
            Length = 391

Frame -3 hits (HSPs):        ________                                     
Annotated Domains:      ______________________________________ ___________
                        __________________________________________________
Database sequence:     |                   |                  |           | 391
                       0                 150                300
__________________

Annotated Domains:
   BLOCKS               BL00344: GATA-type zinc finger domain pr 182..219
   Entrez               Zinc finger region: GATA-TYPE.           182..206
   Entrez               Zinc finger region: GATA-TYPE.           236..260
   Entrez               Domain: POLY-SER.                        70..79
   Entrez               Domain: POLY-THR.                        241..245
   Entrez               Domain: POLY-SER.                        293..298
   PFAM                 GATA: GATA zinc finger                   178..217
   PFAM                 GATA: GATA zinc finger                   232..271
   PRINTS               GATAZNFINGER1: GATA-binding transcriptio 178..195
   PRINTS               GATAZNFINGER2: GATA-binding transcriptio 196..213
   PRODOM               PD004759: GAT6(4) GAT4(4) GAT5(2)        1..49
   PRODOM               PD009109:                                51..110
   PRODOM               PD005565: GAT6(4) GAT4(4) GAT5(2)        113..174
   PRODOM               PD000513: GAT3(10) GAT2(8) GAT6(8)       178..208
   PRODOM               PD000513: GAT3(10) GAT2(8) GAT6(8)       223..262
   PRODOM               PD006622: GAT3(5) GAT1(4) GAT2(4)        265..288
   PRODOM               PD010543: GAT6(4) GA6A(1) GA6B(1)        306..390
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 236..241
   PROSITE              GATA_ZN_FINGER: GATA-type zinc finger do 182..206
   PROSITE              GATA_ZN_FINGER: GATA-type zinc finger do 236..260
__________________


  Minus Strand HSPs:

 Score = 71 (25.0 bits), Expect = 1.6, P = 0.80
 Identities = 19/62 (30%), Positives = 28/62 (45%), Frame = -3

Query:   273 IITISYIISXXXXXXXRGISNTNQNQNPNFFFSSFKSHQYPHPRTRYNHFRPHPPPHQGQ 94
             + +ISY+         +G  + N + +     SS  S   PHP +RY H+ P PP   G 
Sbjct:    43 LTSISYL---QGTGASQGTHSVNSHWSQATSESSSYSSSSPHPSSRY-HYSPSPPMANGS 98

Query:    93 RR 88
              R
Sbjct:    99 TR 100


 >gi|7293488|gb|AAF48863.1|  (AE003509) CG15040 gene product [Drosophila
            melanogaster]
            Length = 1895

Frame -3 hits (HSPs):                     __                              
                        __________________________________________________
Database sequence:     |             |            |            |          | 1895
                       0           500         1000         1500

  Minus Strand HSPs:

 Score = 78 (27.5 bits), Expect = 1.7, P = 0.83
 Identities = 13/24 (54%), Positives = 15/24 (62%), Frame = -3

Query:   162 HQYPHPRTRYNHFRPHPPPHQGQR 91
             H +PHP T Y H  PHP PH G +
Sbjct:   714 HLHPHPHT-YAHSHPHPHPHPGMQ 736


 >gi|4758254  ref|NP_004672.1| eukaryotic translation initiation factor 1A, Y
            chromosome >gi|6016309|sp|O14602|IF1Y_HUMAN EUKARYOTIC TRANSLATION
            INITIATION FACTOR 1A, Y-CHROMOSOMAL (EIF-1A Y ISOFORM) (EIF-4C)
            >gi|2580560|gb|AAC51834.1| (AF000987) eIF-1A, Y isoform [Homo
            sapiens]
            Length = 144

Frame  3 hits (HSPs):                                        _____________
Frame  2 hits (HSPs):                                   _____             
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100

  Plus Strand HSPs:

 Score = 53 (18.7 bits), Expect = 2.0, Sum P(2) = 0.87
 Identities = 17/37 (45%), Positives = 23/37 (62%), Frame = +3

Query:    57 LPDSTRLNEG--IGAGLDEEE--DGAGNDYIEFEDEDIDEI 167
             LP+  ++NE    G G D+E   D  G+D     DEDID+I
Sbjct:   109 LPEHAKINETDTFGPGDDDEIQFDDIGDD-----DEDIDDI 144

 Score = 50 (17.6 bits), Expect = 2.0, Sum P(2) = 0.87
 Identities = 10/14 (71%), Positives = 11/14 (78%), Frame = +2

Query:    11 RYMPDEARLLKAYG 52
             +Y  DEAR LKAYG
Sbjct:    94 KYNADEARSLKAYG 107


 >gi|6572169|emb|CAB62988.1|  (AL022312) dJ1104E15.4 (calcium channel,
            voltage-dependent, alpha 1I subunit) [Homo sapiens]
            Length = 79

Frame -2 hits (HSPs):       _____________________________                 
                        __________________________________________________
Database sequence:     |            |           |            |            | 79
                       0           20          40           60

  Minus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 2.1, P = 0.87
 Identities = 19/45 (42%), Positives = 23/45 (51%), Frame = -2

Query:   118 PSSSSSRPAPMPSLSLVLSG-----SFAVGLEEP--GLVGHVPRP 5
             PSSS++ PA  P ++    G     S   GLEEP  G   HVP P
Sbjct:     8 PSSSAAAPAAEPGVTTEQPGPRSPPSSPPGLEEPLDGADPHVPHP 52


 >gi|6721169|gb|AAF26797.1|AC016829_21  (AC016829) hypothetical protein
            [Arabidopsis thaliana]
            Length = 712

Frame -3 hits (HSPs):   ___                                               
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 712
                       0        150       300        450        600

  Minus Strand HSPs:

 Score = 72 (25.3 bits), Expect = 2.6, P = 0.93
 Identities = 18/35 (51%), Positives = 20/35 (57%), Frame = -3

Query:   204 QNQNPNFFFSSFKSHQYPHPRTRYNHF-RPHPPPHQ 100
             QN NPN F+     H YP P +  N F RP PPP Q
Sbjct:    11 QNPNPNLFY-----H-YPPPNSNPNFFFRPPPPPLQ 40


 >gi|6456821|emb|CAB61485.1|  (AL034420) dJ1112F19.1 (novel protein similar to
            SALL1 (sal (Drosophila)-like 1)) [Homo sapiens]
            Length = 1053

Frame -2 hits (HSPs):                                    ___              
                        __________________________________________________
Database sequence:     |       |      |      |      |      |      |      || 1053
                       0     150    300    450    600    750    900   1050

  Minus Strand HSPs:

 Score = 73 (25.7 bits), Expect = 3.2, P = 0.96
 Identities = 18/40 (45%), Positives = 22/40 (55%), Frame = -2

Query:   121 APSSSSSRPAPMPSL---SLVLSGSFAVGLEEPGLVGHVP 11
             APSSSS  P P+PS+   S  L  +    L+ PG VG  P
Sbjct:   701 APSSSSKVPTPLPSIHSASPTLGFAMMASLDAPGKVGPAP 740


 >gi|7298879|gb|AAF54085.1|  (AE003674) bcd gene product [Drosophila
            melanogaster]
            Length = 67

Frame -3 hits (HSPs):        _____________________________                
                        __________________________________________________
Database sequence:     |              |              |              |     | 67
                       0             20             40             60

  Minus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
 Identities = 12/38 (31%), Positives = 18/38 (47%), Frame = -3

Query:   189 NFFFSSFK-SHQYPHPRTR-YNHFRPHPPPHQGQRRCP 82
             NF+      +H +PHP +  + H  PHP     Q + P
Sbjct:     9 NFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLP 46


 >gi|6323916  ref|NP_013987.1| Translation initiation factor eIF1A; Tif11p
            >gi|729814|sp|P38912|IF1A_YEAST EUKARYOTIC TRANSLATION INITIATION
            FACTOR 1A (EIF-1A) (EIF-4C) >gi|626955|pir||S47943 translation
            initiation factor eIF-1A - yeast (Saccharomyces cerevisiae)
            >gi|533534|gb|AAA82039.1| (U11585) translation initiation factor 1A
            [Saccharomyces cerevisiae] >gi|809083|emb|CAA89243.1| (Z49260)
            Tif11p [Saccharomyces cerevisiae]
            Length = 153

Frame  3 hits (HSPs):                                     ________________
Frame  2 hits (HSPs):                                 _____               
                        __________________________________________________
Database sequence:     |                |               |               | | 153
                       0               50             100             150

  Plus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 5.4, Sum P(2) = 1.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Frame = +3

Query:    54 KLPDSTRLNEGIGAGLDEEED------GAGNDYIEFEDE--DIDEI 167
             +LP++ ++NE    G + +ED       A  D  E EDE  DID+I
Sbjct:   108 ELPENAKINETDNFGFESDEDVNFEFGNADEDDEEGEDEELDIDDI 153

 Score = 40 (14.1 bits), Expect = 5.4, Sum P(2) = 1.0
 Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = +2

Query:    11 RYMPDEARLLKAYGE 55
             +Y  DEAR LK  GE
Sbjct:    94 KYNLDEARTLKNQGE 108


 >gi|7485794|pir||T06064  hypothetical protein F19H22.140 - Arabidopsis thaliana
            >gi|4539323|emb|CAB38824.1| (AL035679) putative protein
            [Arabidopsis thaliana] >gi|7270887|emb|CAB80567.1| (AL161594)
            putative protein [Arabidopsis thaliana]
            Length = 296

Frame -2 hits (HSPs):      ___________                                    
                        __________________________________________________
Database sequence:     |        |       |        |       |        |       | 296
                       0       50     100      150     200      250

  Minus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 5.5, P = 1.0
 Identities = 24/63 (38%), Positives = 35/63 (55%), Frame = -2

Query:   214 QHKPKPKP*LFFL--FLQISSISSSSNSI*SFPAPSSSSSRPAPMPSLSLVLSGSFAVGL 41
             +H   P P   FL  F   +S+S S++   + P   S SS+P P  S SLV+  SF+  +
Sbjct:    21 RHPKPPSPVCLFLRPFCFSASVSQSNHR--NKPRFQSFSSKPLPCHSASLVVK-SFS-SI 76

Query:    40 EEPGL 26
             +EP L
Sbjct:    77 DEPDL 81


 >gi|409852|gb|AAD12771.1|  (U01782) unknown [Mycoplasma genitalium]
            Length = 105

Frame -1 hits (HSPs):                  __________________                 
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 105
                       0        20       40        60       80       100

  Minus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 5.9, P = 1.0
 Identities = 18/37 (48%), Positives = 22/37 (59%), Frame = -1

Query:   212 TQTKTKTLTFFSLPSNLINILILELDIIISGPILLLI 102
             TQT  +T  F+ L   L   LI  LDII+  PILLL+
Sbjct:    33 TQTTGQTYDFWLLVRLLFAPLIFLLDIIVIYPILLLL 69


 >gi|2494686|sp|Q91678|GA6A_XENLA  TRANSCRIPTION FACTOR XGATA-6A (GATA BINDING
            FACTOR-6A) >gi|1209880|gb|AAB05648.1| (U45454) transcription factor
            xGATA-6 [Xenopus laevis]
            Length = 391

Frame -3 hits (HSPs):        ________                                     
Annotated Domains:      ______________________________________ ___________
                        __________________________________________________
Database sequence:     |                   |                  |           | 391
                       0                 150                300
__________________

Annotated Domains:
   BLOCKS               BL00344: GATA-type zinc finger domain pr 182..219
   Entrez               Zinc finger region: GATA-TYPE.           182..206
   Entrez               Zinc finger region: GATA-TYPE.           236..260
   Entrez               Domain: POLY-SER.                        293..298
   PFAM                 GATA: GATA zinc finger                   178..217
   PFAM                 GATA: GATA zinc finger                   232..271
   PRINTS               GATAZNFINGER1: GATA-binding transcriptio 178..195
   PRINTS               GATAZNFINGER2: GATA-binding transcriptio 196..213
   PRODOM               PD004759: GAT6(4) GAT4(4) GAT5(2)        1..49
   PRODOM               PD009109:                                54..107
   PRODOM               PD005565: GAT6(4) GAT4(4) GAT5(2)        113..174
   PRODOM               PD000513: GAT3(10) GAT2(8) GAT6(8)       178..208
   PRODOM               PD000513: GAT3(10) GAT2(8) GAT6(8)       223..262
   PRODOM               PD006622: GAT3(5) GAT1(4) GAT2(4)        265..287
   PRODOM               PD010543: GAT6(4) GA6A(1) GA6B(1)        306..390
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 236..241
   PROSITE              GATA_ZN_FINGER: GATA-type zinc finger do 182..206
   PROSITE              GATA_ZN_FINGER: GATA-type zinc finger do 236..260
__________________


  Minus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 6.1, P = 1.0
 Identities = 19/62 (30%), Positives = 30/62 (48%), Frame = -3

Query:   273 IITISYIISXXXXXXXRGISNTNQNQNPNFFFSSFKSHQYPHPRTRYNHFRPHPPPHQGQ 94
             + +ISY+           + N++ +Q  +   SSF +   PH  +RY H+ P PP H G 
Sbjct:    43 LTSISYLQGTGASQGAHSV-NSHWSQATSES-SSFNNSS-PHTSSRY-HYPPSPPMHNGS 98

Query:    93 RR 88
              R
Sbjct:    99 TR 100


 >gi|2498907|sp|Q39618|SFAS_CHLRE  SF-ASSEMBLIN >gi|7484354|pir||T08178
            assemblin, striated fiber - Chlamydomonas reinhardtii
            >gi|1418268|gb|AAB03789.1| (U56982) SF-assemblin [Chlamydomonas
            reinhardtii]
            Length = 276

Frame  3 hits (HSPs):      _______                                        
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |        |        |        |         |        |    | 276
                       0       50      100      150       200      250
__________________

Annotated Domains:
   Entrez               Domain: NONHELICAL REGION.               1..31
   Entrez               Domain: ROD.                             32..276
   Entrez               Domain: COILED COIL (POTENTIAL).         67..145
   PRODOM               PD013922: SFAS(4) GIAB(1)                14..274
__________________


  Plus Strand HSPs:

 Score = 69 (24.3 bits), Expect = 6.4, P = 1.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Frame = +3

Query:     3 RGRGTCPTRPGSSRPTAKLPDSTRLNEGIGAGLDEEE 113
             R R   PTRPG++ P+AKL   T    G+   L++E+
Sbjct:    18 RRRDFSPTRPGTNGPSAKLEHVTERFAGLWTDLEQEK 54


 >gi|156990|gb|AAA28385.1|  (M14549) segmentation protein PRD 4 [Drosophila
            melanogaster]
            Length = 36

Frame -3 hits (HSPs):           ________________________________________  
                        __________________________________________________
Database sequence:     |                          |                       | 36
                       0                         20

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 7.0, P = 1.0
 Identities = 10/29 (34%), Positives = 15/29 (51%), Frame = -3

Query:   165 SHQYPHPRTR-YNHFRPHPPPHQGQRRCP 82
             +H +PHP +  + H  PHP     Q + P
Sbjct:     7 THTHPHPHSHPHPHSHPHPHHQHPQLQLP 35


 >gi|2961608|gb|AAC05780.1|  (AF051848) eukaryotic translation initiation factor
            1A [Bos taurus]
            Length = 44

Frame  3 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                     |                      |     | 44
                       0                    20                     40

  Plus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 7.0, P = 1.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Frame = +3

Query:    36 SSRPTAKLPDSTRLNEGIGAGLDEEEDGAGNDYIEFEDEDIDEI 167
             S +   +LP+  ++NE    G  ++++   +D I  +DEDID+I
Sbjct:     2 SLKAYGELPEHAKINETDTFGAADDDEIVFDD-IGDDDEDIDDI 44


 >gi|1304441|gb|AAB26950.1|  (U27489) Rsp40 [Pseudorabies virus]
            Length = 92

Frame  3 hits (HSPs):         ________________                            
                        __________________________________________________
Database sequence:     |          |          |          |         |       | 92
                       0         20         40         60        80

  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 8.4, P = 1.0
 Identities = 13/29 (44%), Positives = 18/29 (62%), Frame = +3

Query:    78 NEGIGAGLDEEEDGAGNDYIEFEDEDIDE 164
             ++G G+G D+  DG   D  E EDED D+
Sbjct:    13 SDGEGSGSDDGGDGEDEDEDEDEDEDEDD 41


 >gi|630795|pir||S45069  recombinant antigenic polypeptide - nematode (Onchocerca
            volvulus) >gi|1335712|emb|CAA42696.1| (X60100) recombinant
            antigenic polypeptide [Onchocerca volvulus]
            Length = 75

Frame  3 hits (HSPs):           _________________________                 
                        __________________________________________________
Database sequence:     |            |             |            |          | 75
                       0           20            40           60

  Plus Strand HSPs:

 Score = 55 (19.4 bits), Expect = 8.9, P = 1.0
 Identities = 16/37 (43%), Positives = 20/37 (54%), Frame = +3

Query:    30 PGSSRPTAKLPDSTRLNEGIGAGLDEEEDGAG-NDYIE 140
             P S +PTA   D+T L   + AGL + E G    D IE
Sbjct:    13 PASPKPTAPRLDATTLQHAV-AGLRKTEHGRSLQDDIE 49


 >gi|7292683|gb|AAF48080.1|  (AE003487) CG2446 gene product [alt 1] [Drosophila
            melanogaster] >gi|7292684|gb|AAF48081.1| (AE003487) CG2446 gene
            product [alt 2] [Drosophila melanogaster]
            Length = 550

Frame  3 hits (HSPs):                       ______                        
                        __________________________________________________
Database sequence:     |             |             |            |         | 550
                       0           150           300          450

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 9.4, P = 1.0
 Identities = 20/50 (40%), Positives = 26/50 (52%), Frame = +3

Query:     6 GRGTCPTRPGSSRPTAKLPDSTRLNEGIGAGLDEEEDGAG--NDYIEFEDED 155
             G G+  T   SS    K+ D    N+G+G  LD+E  GAG  N   E E E+
Sbjct:   231 GTGSLSTNGNSS----KVLDGDDTNDGVGVDLDDESQGAGGRNTATESETEN 278


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.94

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.342   0.160   0.558  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.364   0.168   0.712  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.341   0.146   0.470  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.344   0.148   0.464  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.327   0.140   0.436  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.338   0.144   0.510  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      106        98       10.  66 3  12 22  0.10    32
                                                    28  0.099   34
   +2      0      106        98       10.  66 3  12 22  0.10    32
                                                    28  0.099   34
   +1      0      106        97       10.  66 3  12 22  0.10    32
                                                    28  0.097   34
   -1      0      106        98       10.  66 3  12 22  0.10    32
                                                    28  0.099   34
   -2      0      106        99       10.  66 3  12 22  0.10    32
                                                    28  0.10    34
   -3      0      106        98       10.  66 3  12 22  0.10    32
                                                    28  0.099   34


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  25
  No. of states in DFA:  581 (57 KB)
  Total size of DFA:  138 KB (192 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  152.26u 1.63s 153.89t  Elapsed: 00:01:17
  Total cpu time:  152.29u 1.71s 154.00t  Elapsed: 00:01:17
  Start:  Wed Feb 14 10:26:57 2001   End:  Wed Feb 14 10:28:14 2001


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000