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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs13241721          
refSNP ID: rs13241721
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:121/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_003388.4:c.-67-8329A>G
NM_032421.2:c.-67-8329A>G
NT_007758.11:g.11756825A>G
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss22621570 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs13241721 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss22621570SSAHASNP|WGSA-200403-chr7.chr7.NT_007758.10_11756731fwd/TA/Gggcctcccaaagtgctgggattacaggtatagccactatgcccggcctctcccatcttaa03/21/0403/21/04121Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs13241721|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=121
 Tgtgccacca cgcccagcta atttttgtat ttttagtaga gacagggttt caccacgttg
 gccgggctgg tctcaaactc ctgaccttca gtgatctgcc tgcctcggcc Gtcttttcat
 gtgcttatgg gctgtttata tatcttcttt ggtgaaatgt gtattcaaag tgctgagatt
 acaggcgtga gccaccatgc ccggccCTTT TTAAAAAAtt tttttaactt ttttagagac
 agggtctcac tctgtcaccc aggctggagt gtggtagtgt gatcacagct cactgcagcc
 tcaacctcct gggctgaagc aatcctctca ccttagcctc cccagtagct cggactacag
 gcatgcacca ccacacctgg ctacattttg tattattttg tagagataga ttttcgccat
 gttgcccagg ctggtctcaa actcctgagc tccagcaatt cacccacctc ggcctcccaa
 agtgctggga ttacaggtat
 R
 agccactatg cccggccTCT CCCATCTTAA GTGTATGGTT TGggcccagc atagtggctc
 acacctgtaa tcccagcact tggggaggcc aatgcaggtg ggtcacctga ggtcaggagt
 ttgagaccaa cctagccaac atgatgaaac cccgtctcta ctaaaaatTa attgtatggt
 ttgatgactt ctagtataaa catagagttg tgcaactatc accacacccc agttttagga
 catttctact acccagaaag ttctctgtgc ccatttgcag ccaatctgtg tttccaggcc
 caggcaacca ctaatctgca ttctgtgtat acggttttga aatttcatat gaacggattc
 atacaatatg gagtccttcg tgtctagttt cttctactta gcaaaatgtt ttaaacattc
 atccGgccgg gcgtggtggc acacgcctgt aatcccagca ctttgggagg ctgaggcggg
 tggatcacct gaggtcagga

  GeneView back to top
GeneView via analysis of contig annotation: CLIP2 CAP-GLY domain containing linker protein 2
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_007758->NM_003388
function
referenceNT_007758->NM_032421
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_007758->NM_003388->NP_00337911756825forwardintron
referenceNT_007758->NM_032421->NP_11579711756825forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs13241721 maps exactly once on NCBI human chromosome 7
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
7NW_923450.1100992869203034plusAalt_assembly_1CeleraCeleraview500
7NW_001839039.244969869604865minusTalt_assembly_8HuRefHuRefview500
7NT_079593.21175180173056553plusAalt_assembly_2CRA_TCAGchr7v2CRA_TCAGchr7v2view500
7NT_007758.111175682573361417plusAref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007758
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .