R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 316 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7673359|gb|AAF66825.1| (AF190657) poly(A)-binding protein [Nicotiana
tabacum]
Length = 479
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
Plus Strand HSPs:
Score = 623 (219.3 bits), Expect = 7.1e-60, P = 7.1e-60
Identities = 111/136 (81%), Positives = 124/136 (91%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKEERRA+L+AQFSQ+RPVA+ PS+APRMP+YPPGAPG+GQQ YGQGPPA
Sbjct: 210 KPLYVALAQRKEERRAKLRAQFSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPA 269
Query: 198 MMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRGTGPVQQPQQPMPM 377
M+PPQAGFGYQQQLVPGMRPGG PMP+FF+P+V QGQQGQRP GRRG GPVQQ QQPMP+
Sbjct: 270 MIPPQAGFGYQQQLVPGMRPGGAPMPNFFMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPL 329
Query: 378 MXXXMLPXGRVYRYPP 425
M MLP GR+YRYPP
Sbjct: 330 MQQQMLPRGRMYRYPP 345
>gi|7673355|gb|AAF66823.1|AF190655_1 (AF190655) poly(A)-binding protein
[Nicotiana tabacum]
Length = 649
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 649
0 150 300 450 600
Plus Strand HSPs:
Score = 587 (206.6 bits), Expect = 4.6e-56, P = 4.6e-56
Identities = 109/137 (79%), Positives = 118/137 (86%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKEERRARLQAQFSQMRP+A+ SVAPRMP+YPPG PGLGQQ YGQ PA
Sbjct: 377 KPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPA 436
Query: 198 MMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRGTG-PVQQPQQPMP 374
M+PPQAGFGYQQQLVPGMRPGGGPMP+FF+PMV QGQQGQRP GRRG P+QQ QQP+P
Sbjct: 437 MLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQPVP 496
Query: 375 MMXXXMLPXGRVYRYPP 425
+M M P GR YRYPP
Sbjct: 497 LMQQQMFPRGRGYRYPP 513
>gi|7673357|gb|AAF66824.1|AF190656_1 (AF190656) poly(A)-binding protein
[Nicotiana tabacum]
Length = 330
Frame 3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 330
0 150 300
Plus Strand HSPs:
Score = 581 (204.5 bits), Expect = 2.0e-55, P = 2.0e-55
Identities = 108/137 (78%), Positives = 117/137 (85%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKEERRARLQAQFSQMRP+A+ SVAPRMP+YPPG PGLGQQ YGQ PA
Sbjct: 58 KPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPA 117
Query: 198 MMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRGTG-PVQQPQQPMP 374
M+PPQAGFGYQQQLVPGMRPGGGPMP+FF+PMV QGQQGQRP RRG P+QQ QQP+P
Sbjct: 118 MLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGSRRGGAVPLQQGQQPVP 177
Query: 375 MMXXXMLPXGRVYRYPP 425
+M M P GR YRYPP
Sbjct: 178 LMQQQMFPRGRGYRYPP 194
>gi|7528270|gb|AAF63202.1|AF240679_1 (AF240679) poly(A)-binding protein
[Cucumis sativus]
Length = 649
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 649
0 150 300 450 600
Plus Strand HSPs:
Score = 539 (189.7 bits), Expect = 5.6e-51, P = 5.6e-51
Identities = 101/136 (74%), Positives = 114/136 (83%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPR-MPLYPPGAPGLGQQFLYGQGPP 194
KPLYVALAQRKE+R ARLQAQFSQM+P+A+ SVAPR MP+YPPG PG+GQQ YGQ PP
Sbjct: 379 KPLYVALAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPP 438
Query: 195 AMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRGTGPVQQPQQPMP 374
++ Q GFGYQQQL+PGMRPGGGPMP+FFVPMV QGQQGQR GRR G +QQ QQP+P
Sbjct: 439 TIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRA-GAIQQTQQPVP 497
Query: 375 MMXXXMLPXGRVYRYPP 425
+M MLP GRVYRYPP
Sbjct: 498 LMQQQMLPRGRVYRYPP 514
>gi|1171978|sp|P42731|PAB2_ARATH POLYADENYLATE-BINDING PROTEIN 2 (POLY(A)
BINDING PROTEIN 2) (PABP 2) >gi|7439968|pir||T05425
polyadenylate-binding protein F28A23.130 - Arabidopsis thaliana
>gi|304109|gb|AAA61780.1| (L19418) poly(A)-binding protein
[Arabidopsis thaliana] >gi|2911051|emb|CAA17561.1| (AL021961)
poly(A)-binding protein [Arabidopsis thaliana]
>gi|7270360|emb|CAB80128.1| (AL161584) poly(A)-binding protein
[Arabidopsis thaliana]
Length = 629
Frame 3 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 629
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00030A: Eukaryotic RNA-binding region 217..235
BLOCKS BL00030B: Eukaryotic RNA-binding region 255..264
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 31..115
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 117..204
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 206..291
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 313..392
DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 394..620
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 38..43
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 77..84
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 126..131
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 164..171
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 217..222
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 255..262
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 320..325
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 358..365
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 38..109
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 126..196
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 217..287
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 320..390
PFAM PABP: Poly-adenylate binding protein, un 540..611
PRODOM PD055999: PAB2_ARATH 1..37
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 39..75
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 78..121
PRODOM PD186424: 123..160
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 163..204
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 218..250
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 254..303
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 321..352
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 357..399
PRODOM PD066173: Q39953(2) 402..551
PRODOM PD002964: PABP(4) PAB1(2) 554..612
PROSITE RNP_1: Eukaryotic putative RNA-binding r 164..171
PROSITE RNP_1: Eukaryotic putative RNA-binding r 255..262
PROSITE RNP_1: Eukaryotic putative RNA-binding r 358..365
__________________
Plus Strand HSPs:
Score = 516 (181.6 bits), Expect = 1.5e-48, P = 1.5e-48
Identities = 97/135 (71%), Positives = 110/135 (81%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVA+AQRKE+RR RLQAQFSQ+RPVA+ PSV PRMP+YPPG PG+GQQ YGQ PPA
Sbjct: 386 KPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPA 445
Query: 198 MMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRGTGPVQQPQQPMPM 377
M+PPQ G+GYQQQLVPGMRPGGGP+PSFF+PMV Q QQ QRP G R G +Q QQ PM
Sbjct: 446 MIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMV-QPQQ-QRPGGGRRPGGIQHSQQQNPM 503
Query: 378 MXXXMLPXGRVYRYP 422
M M P GR++RYP
Sbjct: 504 MQQQMHPRGRMFRYP 518
>gi|10120431|gb|AAG13056.1|AC011807_15 (AC011807) Putative Poly-A Binding
Protein [Arabidopsis thaliana]
Length = 671
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 671
0 150 300 450 600
Plus Strand HSPs:
Score = 499 (175.7 bits), Expect = 9.8e-47, P = 9.8e-47
Identities = 100/140 (71%), Positives = 111/140 (79%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKE+R+ARLQAQFSQMRPV + P+V PRM +YPPG P +GQQ YGQGPPA
Sbjct: 395 KPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPA 454
Query: 198 MMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQ-------RPVG-RRGTGPVQ 353
M+P Q GFGYQQQLVPGMRPGG PMP+FF+PM+ QGQQ Q RP G RRG P
Sbjct: 455 MIP-QPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALP-- 511
Query: 354 QPQQPMPMMXXXMLPXGRVYRYP 422
QPQQP PMM M P GR+YRYP
Sbjct: 512 QPQQPSPMMQQQMHPRGRMYRYP 534
>gi|7439964|pir||T00497 polyadenylate-binding protein T20D16.2 - Arabidopsis
thaliana >gi|2642429|gb|AAB87097.1| (AC002391) putative
poly(A)-binding protein [Arabidopsis thaliana]
Length = 662
Frame 3 hits (HSPs): ___ _____________
__________________________________________________
Database sequence: | | | | | | 662
0 150 300 450 600
Plus Strand HSPs:
Score = 450 (158.4 bits), Expect = 2.4e-41, P = 2.4e-41
Identities = 94/136 (69%), Positives = 104/136 (76%), Frame = +3
Query: 15 GKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPP 194
GKPLYVALAQRKEERRA+LQAQFSQMRP A P V PRMP++ GAPGLGQQ YGQGPP
Sbjct: 395 GKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPP 453
Query: 195 AMMPPQAGFGYQQQLVPGMRPGGGPMPSFFV-PMVXQGQQGQRPVGRR-GTGPVQ-QPQQ 365
++P Q GFGYQ QLVPGMRP +FF PM+ GQQG RP GRR G GP++ Q QQ
Sbjct: 454 PIIPHQPGFGYQPQLVPGMRP------AFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQ 507
Query: 366 PMPMMXXXMLPXGRVYRYP 422
PMP M M+P GR YRYP
Sbjct: 508 PMPYMQPQMMPRGRGYRYP 526
Score = 67 (23.6 bits), Expect = 9.9, Sum P(2) = 1.0
Identities = 37/108 (34%), Positives = 44/108 (40%), Frame = +3
Query: 111 PSVAPRMPLY---PPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMP-S 278
P + P P + P PG+ F +G GP MM P G Q G R G GPM
Sbjct: 453 PPIIPHQPGFGYQPQLVPGMRPAF-FG-GP--MMQP----GQQGPRPGGRRSGDGPMRHQ 504
Query: 279 FFVPM-VXQGQQGQRPVGRR-GTGPVQQPQQPMPMMXXXMLPXGRVYRYPPWPQ 434
PM Q Q R G R +G P PMP M+P P+ Q
Sbjct: 505 HQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMP---GGMVPVAYDMNVMPYSQ 555
Score = 53 (18.7 bits), Expect = 9.9, Sum P(2) = 1.0
Identities = 11/28 (39%), Positives = 15/28 (53%), Frame = +3
Query: 6 RFAGKPLYVALAQRKEERRARLQAQFSQ 89
+F K YV AQ+K ER L ++ Q
Sbjct: 289 KFDDKEWYVGKAQKKSERELELSRRYEQ 316
>gi|7439967|pir||T06979 polyadenylate-binding protein - wheat
>gi|1737492|gb|AAB38974.1| (U81318) poly(A)-binding protein
[Triticum aestivum]
Length = 651
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 651
0 150 300 450 600
Plus Strand HSPs:
Score = 417 (146.8 bits), Expect = 1.2e-37, P = 1.2e-37
Identities = 85/134 (63%), Positives = 97/134 (72%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKE+R+ARLQAQFSQMRPV + +V PRM + PPG P +GQQ YGQ PPA
Sbjct: 382 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQ-PPA 439
Query: 198 MMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRR-GTGPVQQPQQPMP 374
+ PQ GFG+QQ +PGMRPGG PMP+F +PMV QGQQ QRP GRR G G +QQ Q M
Sbjct: 440 FINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGRRAGAGGMQQSMQ-MG 498
Query: 375 MMXXXMLPXGRVYRY 419
GR YRY
Sbjct: 499 QQQMLGRGGGRGYRY 513
>gi|480602|pir||S37085 polyadenylate-binding protein - fern (Anemia
phyllitidis) >gi|398327|emb|CAA81127.1| (Z26042) poly(A)-mRNA
binding protein [Anemia phyllitidis]
Length = 638
Frame 3 hits (HSPs): __________
Annotated Domains: _____________________ __________________________
__________________________________________________
Database sequence: | | | | | | 638
0 150 300 450 600
__________________
Annotated Domains:
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 21..105
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 107..193
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 195..279
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 302..380
DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 382..620
Entrez domain: ribonucleoprotein repeat homolog 27..94
Entrez domain: ribonucleoprotein repeat homolog 115..181
Entrez domain: ribonucleoprotein repeat homolog 205..271
Entrez domain: ribonucleoprotein repeat homolog 308..374
PROSITE RNP_1: Eukaryotic putative RNA-binding r 154..161
__________________
Plus Strand HSPs:
Score = 346 (121.8 bits), Expect = 8.0e-30, P = 8.0e-30
Identities = 74/124 (59%), Positives = 88/124 (70%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAIT-PSVAPRMP-LYPPGAPGLGQQFLYGQGP 191
KPLYVALAQRKEERRARLQAQF+QM+ VA P +AP P +Y PG G+G Q YGQ
Sbjct: 375 KPLYVALAQRKEERRARLQAQFAQMQIVAPNAPPMAPNPPSMYHPGPQGMGHQMFYGQPA 434
Query: 192 PAMMPPQA-GFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRG-TGPVQ-QPQ 362
P ++P QA GFGYQQ +VP MRP +P++F+P+ GQQ QRPV RRG GP+Q Q
Sbjct: 435 PGLLPSQANGFGYQQPMVPTMRPTSAGVPNYFMPVQRPGQQIQRPVNRRGGVGPLQPQHH 494
Query: 363 QPMP 374
QP P
Sbjct: 495 QPPP 498
>gi|5007080|gb|AAD37807.1| (AF153689) poly(A)-binding protein [Oryza sativa]
Length = 183
Frame 3 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 260 (91.5 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 47/65 (72%), Positives = 55/65 (84%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKE+R+ARLQAQFSQ+RPV + PSV PRMP++PPG PG+GQQ YGQ PPA
Sbjct: 117 KPLYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPA 176
Query: 198 MMPPQ 212
+ Q
Sbjct: 177 FINTQ 181
>gi|1171979|sp|Q05196|PAB5_ARATH POLYADENYLATE-BINDING PROTEIN 5 (POLY(A)
BINDING PROTEIN 5) (PABP 5) >gi|166786|gb|AAA32832.1| (M97657)
poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Frame 3 hits (HSPs): ___________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 668
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00030B: Eukaryotic RNA-binding region 172..181
BLOCKS BL00030A: Eukaryotic RNA-binding region 330..348
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 40..123
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 125..213
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 215..300
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 323..401
DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 403..655
Entrez Domain: POLY-ALA. 13..16
Entrez Domain: POLY-ALA. 27..38
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 47..52
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 85..92
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 134..139
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 172..179
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 227..232
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 265..272
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 330..335
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 368..375
Entrez Domain: POLY-GLN. 514..521
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 47..117
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 134..204
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 227..297
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 330..400
PFAM PABP: Poly-adenylate binding protein, un 575..646
PRODOM PD186691: 40..83
PRODOM PD060589: PABP(4) PAB1(2) 85..129
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 135..169
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 171..218
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 228..258
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 264..312
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 331..361
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 366..412
PRODOM PD066173: Q39953(2) 414..510
PRODOM PD029581: PAB5_ARATH 512..591
PRODOM PD002964: PABP(4) PAB1(2) 593..647
PROSITE RNP_1: Eukaryotic putative RNA-binding r 172..179
PROSITE RNP_1: Eukaryotic putative RNA-binding r 368..375
__________________
Plus Strand HSPs:
Score = 239 (84.1 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 59/128 (46%), Positives = 75/128 (58%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMR-PVAITPSVAPRMPLY--PPGAPGLGQQ--FLYG 182
KPLYVALAQRKEER+A LQ+ F+Q+R P ++P +P + PPG P G G
Sbjct: 396 KPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIG 455
Query: 183 QGPPAMMPPQA-GFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRP-VG-RRGTGPVQ 353
++P Q G+GYQ Q +PGMRPG GP P+F +P Q Q P VG RRG +Q
Sbjct: 456 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQ 514
Query: 354 QPQQPMPMM 380
Q Q M+
Sbjct: 515 QQFQQQQML 523
>gi|7239504|gb|AAF43230.1|AC012654_14 (AC012654) Identical to the
polyadenylate-binding protein 5 (PAB5) from Arabidopsis thaliana
gb|M97657
Length = 668
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 668
0 150 300 450 600
Plus Strand HSPs:
Score = 239 (84.1 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 59/128 (46%), Positives = 75/128 (58%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMR-PVAITPSVAPRMPLY--PPGAPGLGQQ--FLYG 182
KPLYVALAQRKEER+A LQ+ F+Q+R P ++P +P + PPG P G G
Sbjct: 396 KPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIG 455
Query: 183 QGPPAMMPPQA-GFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRP-VG-RRGTGPVQ 353
++P Q G+GYQ Q +PGMRPG GP P+F +P Q Q P VG RRG +Q
Sbjct: 456 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQ 514
Query: 354 QPQQPMPMM 380
Q Q M+
Sbjct: 515 QQFQQQQML 523
>gi|12643628|sp|O64380|PAB3_ARATH POLYADENYLATE-BINDING PROTEIN 3 (POLY(A)
BINDING PROTEIN 3) (PABP 3) >gi|2505869|emb|CAA72907.1| (Y12227)
polyA binding protein PAB3 [Arabidopsis thaliana]
Length = 660
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 660
0 150 300 450 600
Plus Strand HSPs:
Score = 233 (82.0 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 64/130 (49%), Positives = 77/130 (59%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191
KPLY+ALAQRKE+RRA LQA FSQ+R A P +PPG P G Q +Y GQ
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIR--APGPMSGFH---HPPGGPMPGPPQHMYVGQNG 454
Query: 192 PAMMPPQA-GFGYQQQLVPGMRPGGGPMPSFFVP--MVXQGQQGQRPVGRRGTGPVQQPQ 362
+M+P Q G+G+Q Q +PGMRPG GP +F VP + Q Q G R RRG VQQ
Sbjct: 455 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHI 513
Query: 363 QPMPMMXXXMLPXGR 407
Q +M P R
Sbjct: 514 QQQQLMHRNPSPGMR 528
>gi|9930616|gb|AAG02117.1|AF293840_1 (AF293840) poly(A) binding protein
[Arabidopsis thaliana]
Length = 660
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 660
0 150 300 450 600
Plus Strand HSPs:
Score = 233 (82.0 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 64/130 (49%), Positives = 77/130 (59%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191
KPLY+ALAQRKE+RRA LQA FSQ+R A P +PPG P G Q +Y GQ
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIR--APGPMSGFH---HPPGGPMPGPPQHMYVGQNG 454
Query: 192 PAMMPPQA-GFGYQQQLVPGMRPGGGPMPSFFVP--MVXQGQQGQRPVGRRGTGPVQQPQ 362
+M+P Q G+G+Q Q +PGMRPG GP +F VP + Q Q G R RRG VQQ
Sbjct: 455 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYSLQRQPQTGPRMGFRRGATNVQQHI 513
Query: 363 QPMPMMXXXMLPXGR 407
Q +M P R
Sbjct: 514 QQQQLMHRNPSPGMR 528
>gi|7439965|pir||T00768 polyadenylate-binding protein T22J18.7 - Arabidopsis
thaliana >gi|3287682|gb|AAC25510.1|AAC25510 (AC003979) Strong
similarity to gb|M97657 poly(A)-binding protein (PABP5) from A.
thaliana. [Arabidopsis thaliana]
Length = 655
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 655
0 150 300 450 600
Plus Strand HSPs:
Score = 200 (70.4 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 58/130 (44%), Positives = 71/130 (54%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191
KPLY+ALAQRKE+RRA LQ + P +PPG P G Q +Y GQ
Sbjct: 400 KPLYIALAQRKEDRRAHLQIR---------APGPMSGFH-HPPGGPMPGPPQHMYVGQNG 449
Query: 192 PAMMPPQA-GFGYQQQLVPGMRPGGGPMPSFFVP--MVXQGQQGQRPVGRRGTGPVQQPQ 362
+M+P Q G+G+Q Q +PGMRPG GP +F VP + Q Q G R RRG VQQ
Sbjct: 450 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHI 508
Query: 363 QPMPMMXXXMLPXGR 407
Q +M P R
Sbjct: 509 QQQQLMHRNPSPGMR 523
>gi|3123239|sp|P31209|PABP_SCHPO POLYADENYLATE-BINDING PROTEIN (POLY(A) BINDING
PROTEIN) (PABP) >gi|7492311|pir||T38950 polyadenylate-binding
protein - fission yeast (Schizosaccharomyces pombe)
>gi|2104439|emb|CAB08762.1| (Z95396) polyadenylate-binding protein
[Schizosaccharomyces pombe]
Length = 653
Frame 3 hits (HSPs): ____ ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 653
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00030A: Eukaryotic RNA-binding region 82..100
BLOCKS BL00030B: Eukaryotic RNA-binding region 208..217
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 82..87
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 121..128
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 170..175
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 208..215
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 263..268
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 301..308
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 366..371
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 404..411
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 82..153
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 170..240
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 263..333
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 366..436
PFAM PABP: Poly-adenylate binding protein, un 570..641
PRODOM PD059909: PABP_SCHPO 1..81
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 83..119
PRODOM PD060589: PABP(4) PAB1(2) 121..165
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 171..201
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 208..249
PRODOM PD186873: PABP(2) O96606(1) Q92227(1) 257..298
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 301..349
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 367..397
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 403..448
PRODOM PD066162: PABP_SCHPO 450..583
PRODOM PD002964: PABP(4) PAB1(2) 585..641
PROSITE RNP_1: Eukaryotic putative RNA-binding r 208..215
PROSITE RNP_1: Eukaryotic putative RNA-binding r 301..308
PROSITE RNP_1: Eukaryotic putative RNA-binding r 404..411
__________________
Plus Strand HSPs:
Score = 145 (51.0 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 52/129 (40%), Positives = 62/129 (48%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPR--MPLYPPGAPGLGQQFLYGQ 185
AGKPLYVALAQRKE RR++L+AQ + VA +P GA G +YG
Sbjct: 430 AGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATG---PLIYGP 486
Query: 186 GPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRGT---GPVQQ 356
G + P A G +VPG GPMP + M Q G G G GPV
Sbjct: 487 GGYPI--PAAVNGRGMPMVPGHN---GPMP-MYPGMPTQFPAGGPAPGYPGMNARGPV-- 538
Query: 357 PQQPMPMMXXXMLP 398
P Q PMM +P
Sbjct: 539 PAQGRPMMMPGSVP 552
Score = 70 (24.6 bits), Expect = 0.26, Sum P(2) = 0.23
Identities = 13/29 (44%), Positives = 19/29 (65%), Frame = +3
Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQMR 95
+ GK LYV AQ+K ER L+ ++ QM+
Sbjct: 326 YKGKKLYVGRAQKKHEREEELRKRYEQMK 354
Score = 65 (22.9 bits), Expect = 0.26, Sum P(2) = 0.23
Identities = 19/58 (32%), Positives = 27/58 (46%), Frame = +3
Query: 123 PRMPL-YPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMV 296
P MP +P G P G + +GP +P Q + ++PG P GP + VP V
Sbjct: 514 PGMPTQFPAGGPAPGYPGMNARGP---VPAQG----RPMMMPGSVPSAGPAEAEAVPAV 565
>gi|538583|pir||DNZPPA polyadenylate-binding protein - fission yeast
(Schizosaccharomyces pombe) (fragment) >gi|173421|gb|AAA35320.1|
(M64603) poly(A)-binding protein [Schizosaccharomyces pombe]
Length = 628
Frame 3 hits (HSPs): ___ ___________
Annotated Domains: __ ______ ______ ______ _______
__________________________________________________
Database sequence: | | | | | | 628
0 150 300 450 600
__________________
Annotated Domains:
Entrez domain: ribonucleoprotein repeat homolog 67..134
Entrez region: RNA-binding RNP2 motif 68..73
Entrez region: RNA-binding RNP1 motif 107..114
Entrez domain: ribonucleoprotein repeat homolog 155..221
Entrez region: RNA-binding RNP2 motif 156..161
Entrez region: RNA-binding RNP1 motif 194..201
Entrez domain: ribonucleoprotein repeat homolog 248..314
Entrez region: RNA-binding RNP2 motif 249..254
Entrez region: RNA-binding RNP1 motif 287..294
Entrez domain: ribonucleoprotein repeat homolog 351..417
Entrez region: RNA-binding RNP2 motif 352..357
Entrez region: RNA-binding RNP1 motif 390..397
PROSITE G_BETA_REPEATS: Beta-transducin family T 8..22
PROSITE RNP_1: Eukaryotic putative RNA-binding r 194..201
PROSITE RNP_1: Eukaryotic putative RNA-binding r 287..294
PROSITE RNP_1: Eukaryotic putative RNA-binding r 390..397
__________________
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 51/129 (39%), Positives = 64/129 (49%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPR--MPLYPPGAPGLGQQFLYGQ 185
AGKPLYVALAQRKE RR++L+AQ + VA +P GA G +YG
Sbjct: 416 AGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATG---PLIYGP 472
Query: 186 GPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSF-FVPMVXQGQQGQRP--VGRRGTGPVQQ 356
G + P A G +VPG GPMP + +P + + RP G GPV
Sbjct: 473 GGYPI--PAAVNGRGMPMVPGHN---GPMPMYPGMPPLSSLLE-VRPGYPGMNARGPV-- 524
Query: 357 PQQPMPMMXXXMLP 398
P Q PMM +P
Sbjct: 525 PAQGRPMMMPGSVP 538
Score = 68 (23.9 bits), Expect = 0.41, Sum P(2) = 0.34
Identities = 13/29 (44%), Positives = 18/29 (62%), Frame = +3
Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQMR 95
+ GK LYV AQ+K ER L+ + QM+
Sbjct: 312 YKGKKLYVGRAQKKHEREEELRKAYEQMK 340
Score = 65 (22.9 bits), Expect = 0.41, Sum P(2) = 0.34
Identities = 22/68 (32%), Positives = 29/68 (42%), Frame = +3
Query: 93 RPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMP--PQAGFGYQQQLVPGMRPGGG 266
R + + P MP+YP G P L G P M P G + ++PG P G
Sbjct: 484 RGMPMVPGHNGPMPMYP-GMPPLSSLLEVRPGYPGMNARGPVPAQG-RPMMMPGSVPSAG 541
Query: 267 PMPSFFVPMV 296
P + VP V
Sbjct: 542 PAEAEAVPAV 551
>gi|7439963|pir||T07933 polyadenylate-binding protein RB47 precursor,
chloroplast - Chlamydomonas reinhardtii >gi|2935338|gb|AAC39368.1|
(AF043297) poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 623
0 150 300 450 600
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 51/135 (37%), Positives = 67/135 (49%), Frame = +3
Query: 15 GKPLYVALAQRKEERRA-----RLQAQF---SQMRPVAITPSVAP---RMPLYPPGAPGL 161
GKPLYVALAQRK+ RRA +QA+ + RP ++P MP + PG G+
Sbjct: 375 GKPLYVALAQRKDVRRATQLEANMQARMGMGAMSRPPNPMAGMSPYPGAMPFFAPGPGGM 434
Query: 162 GQ-QFLYGQGPPAMMPPQA----GFGYQQQLVPGMRPGGGPMPSFFVPM-VXQGQQGQRP 323
G P MMPP+ G G + ++P GG PM PM +G+ G+ P
Sbjct: 435 AAGPRAPGMMYPPMMPPRGMPGPGRGPRGPMMPPQMMGG-PMMG--PPMGPGRGRGGRGP 491
Query: 324 VGR-RGTGPVQQPQQPMP 374
GR +G G QQP P
Sbjct: 492 SGRGQGRGNNAPAQQPKP 509
>gi|7509318|pir||T26427 hypothetical protein Y106G6H.2 - Caenorhabditis elegans
>gi|3880681|emb|CAA21572.1| (AL032631) predicted using
Genefinder~contains similarity to Pfam domain: PF00076 (RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)), Score=334.3,
E-value=4.3e-97, N=4; PF00658 (Poly-adenylate binding protein,
unique domain.), Score=104.3, E-val>
Length = 646
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 646
0 150 300 450 600
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 48/116 (41%), Positives = 62/116 (53%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVA+AQRKE+RRA+L +Q+ Q P +Y P PG G Y P
Sbjct: 385 KPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGY---YVANP-- 439
Query: 198 MMPPQAGFGYQQQLV-PGMRPGGG---PMPSFFV----PMVXQGQQGQRPVGRRGTGPVQ 353
M Q F QQ+V PG R G P+ + ++ P V Q + G RP ++G GP
Sbjct: 440 -MQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMG-RPQNQQG-GPRG 496
Query: 354 QPQQ 365
PQQ
Sbjct: 497 PPQQ 500
>gi|1616770|gb|AAB16848.1| (U70731) putative poly(A)-binding protein FabM
[Aspergillus nidulans]
Length = 705
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 705
0 150 300 450 600
Plus Strand HSPs:
Score = 137 (48.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 52/133 (39%), Positives = 63/133 (47%), Frame = +3
Query: 15 GKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAP----RMPLYPPGAPGLGQQ-FLY 179
GKPLYVALAQRK+ RR++L+A + + A + + P G GQQ F+
Sbjct: 444 GKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIP 503
Query: 180 GQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRGTGPVQQP 359
G M PPQ G +PG RPG P P F P GQQG R VG P
Sbjct: 504 GAQRGGMFPPQPGM---MMGMPG-RPGQYPGP--F-P----GQQGGRGVGPNQQIPPNFQ 552
Query: 360 QQPMPMMXXXMLPXGRVY 413
PM M +P G Y
Sbjct: 553 GLPMGAMQGPGIPNGMGY 570
>gi|780291|gb|AAA65224.1| (U24123) polyadenylate-binding protein
[Caenorhabditis elegans]
Length = 646
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 646
0 150 300 450 600
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 47/116 (40%), Positives = 61/116 (52%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVA+ QRKE+RRA+L +Q+ Q P +Y P PG G Y P
Sbjct: 385 KPLYVAIGQRKEDRRAQLASQYMQRVASMRMHGNVPGAAMYNPTQPGPGY---YVANP-- 439
Query: 198 MMPPQAGFGYQQQLV-PGMRPGGG---PMPSFFV----PMVXQGQQGQRPVGRRGTGPVQ 353
M Q F QQ+V PG R G P+ + ++ P V Q + G RP ++G GP
Sbjct: 440 -MQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMG-RPQNQQG-GPRG 496
Query: 354 QPQQ 365
PQQ
Sbjct: 497 PPQQ 500
>gi|4335716|gb|AAD17394.1| (AC006248) putative poly(A)-binding protein
[Arabidopsis thaliana]
Length = 132
Frame 3 hits (HSPs): _____________ ___________
__________________________________________________
Database sequence: | | | | 132
0 50 100
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 16/28 (57%), Positives = 21/28 (75%), Frame = +3
Query: 99 VAITPSVAPRMPLYPPGAPGLGQQFLYG 182
VA+ PSV PRMP+YP G+PG+ + YG
Sbjct: 105 VAMPPSVGPRMPIYPLGSPGIRKSMFYG 132
Score = 42 (14.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 11/33 (33%), Positives = 17/33 (51%), Frame = +3
Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQ-MRPVA 104
F K V AQ+K ER L+ + Q ++ +A
Sbjct: 38 FDDKQWVVDRAQKKSEREMELKVPYEQSLKEIA 70
>gi|7499382|pir||T21096 hypothetical protein F18H3.3b - Caenorhabditis elegans
>gi|3876087|emb|CAA90446.1| (Z50110) contains similarity to Pfam
domain: PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)), Score=332.7, E-value=1.4e-96, N=4~cDNA EST EMBL:Z14771
comes from this gene~cDNA EST yk42f11.5 comes from this gene~cDNA
EST yk42f11.3 comes>
Length = 566
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 566
0 150 300 450
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 47/122 (38%), Positives = 56/122 (45%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMP----LYPPGAPG-LGQQFLYG 182
KPLYVALAQRKE+RRA+L +Q+ Q A +P LY PG G +
Sbjct: 411 KPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNA 470
Query: 183 QGPPAMMPPQAGFGYQQQLVPGMRPGGGPM----PSFFVPMVXQGQQGQRPVGRRGTGPV 350
QG P P A Q + PG R M P F V QQG+ P+ R G
Sbjct: 471 QGRPGFQPQSA----QIRGPPGQRVFQNQMFMQYP-FNQRQVYPQQQGRPPM-RTNDGRP 524
Query: 351 QQPQQPMP 374
Q P P
Sbjct: 525 QYGMAPRP 532
>gi|206716|gb|AAA42066.1| (M64791) salivary proline-rich protein [Rattus
norvegicus]
Length = 202
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 42/119 (35%), Positives = 51/119 (42%), Frame = +3
Query: 75 AQFSQMRPVAITPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGM 251
AQ +++ + TP+ P P +PP P G QQ QG P PPQ G + Q G
Sbjct: 16 AQEPELQSLDQTPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GP 69
Query: 252 RPGGGPMPSFFVPMVXQGQQGQRPVGRRGTGPVQQPQQPMPMMXXXMLPXGRVYRYPPWP 431
P GGP P QQG P G GP Q+P P P P G + PP P
Sbjct: 70 TPPGGPQQK---PPQPGNQQGPPPPG----GPQQKP--PQPEKPQGPPPPGGPQQRPPQP 120
Score = 77 (27.1 bits), Expect = 6.0, P = 1.0
Identities = 36/103 (34%), Positives = 40/103 (38%), Frame = +3
Query: 123 PRMPLYPPGAPGLGQ-QFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVX 299
P+ P PPG P Q QGPP PQ Q + G P GGP P
Sbjct: 66 PQGPT-PPGGPQQKPPQPGNQQGPPPPGGPQQK-PPQPEKPQGPPPPGGPQQR---PPQP 120
Query: 300 QGQQGQRPVGRRGTGPVQQPQQPMPMMXXXMLPXGRVYRYPPWP 431
QQG P G GP Q+P P P P G + PP P
Sbjct: 121 GNQQGPPPPG----GPQQKP--PQPEKPQGPPPPGGPQQKPPQP 158
>gi|7499381|pir||T21095 hypothetical protein F18H3.3a - Caenorhabditis elegans
>gi|3876085|emb|CAA90444.1| (Z50110) contains similarity to Pfam
domain: PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)), Score=332.7, E-value=1.4e-96, N=4; PF00658
(Poly-adenylate binding protein, unique domain.), Score=108.5,
E-value=4.2e-29, N=1~cDNA EST yk11>
Length = 692
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 692
0 150 300 450 600
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 47/122 (38%), Positives = 56/122 (45%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMP----LYPPGAPG-LGQQFLYG 182
KPLYVALAQRKE+RRA+L +Q+ Q A +P LY PG G +
Sbjct: 411 KPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNA 470
Query: 183 QGPPAMMPPQAGFGYQQQLVPGMRPGGGPM----PSFFVPMVXQGQQGQRPVGRRGTGPV 350
QG P P A Q + PG R M P F V QQG+ P+ R G
Sbjct: 471 QGRPGFQPQSA----QIRGPPGQRVFQNQMFMQYP-FNQRQVYPQQQGRPPM-RTNDGRP 524
Query: 351 QQPQQPMP 374
Q P P
Sbjct: 525 QYGMAPRP 532
>gi|7484631|pir||T12420 polyadenylate-binding protein - common ice plant
(fragment) >gi|2213871|gb|AAB61594.1| (AF003126) poly(A)-binding
protein [Mesembryanthemum crystallinum]
Length = 176
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 176
0 50 100 150
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 24/36 (66%), Positives = 26/36 (72%), Frame = +3
Query: 321 PVGRRGTG-PVQQPQQ-PMPMMXXXMLPXGRVYRYPP 425
P GRR G PVQQ QQ P+PMM M+P GR YRYPP
Sbjct: 1 PTGRRAGGAPVQQSQQQPIPMMQQQMMPRGR-YRYPP 36
>gi|2665654|gb|AAB88449.1| (AF032896) polyadenylate binding protein [Petromyzon
marinus]
Length = 630
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 630
0 150 300 450 600
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 51/131 (38%), Positives = 63/131 (48%), Frame = +3
Query: 6 RFAG-KPLYVALAQRKEERRARLQAQFSQ----MRPVAITPSVAPRMPLYPPGAPGLGQQ 170
R G KPLYVALAQRKEER+ L +QF Q MR A+ PS + Y P A G
Sbjct: 357 RIIGSKPLYVALAQRKEERKMHLTSQFMQRLAGMR--AVPPSAI--IGQYQPAAAS-GY- 410
Query: 171 FLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRG-TGP 347
F+ A MP QA G P P P + P+ + QG G + TGP
Sbjct: 411 FM------AAMPQQAQ-GRTAYYTPSPMAPMRPNPRW--PLQVR-PQGAHAAGFQAITGP 460
Query: 348 VQQPQQPMPMMXXXMLP 398
++QP P P + P
Sbjct: 461 MRQPA-PRPTQMRTVNP 476
Score = 115 (40.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 47/135 (34%), Positives = 56/135 (41%), Frame = +3
Query: 6 RFAG-KPLYVALAQRKEERRARLQAQFSQ----MRPVAITPSVAPRMPLYPPG-----AP 155
R G KPLYVALAQRKEER+ L +QF Q MR V + + P G P
Sbjct: 357 RIIGSKPLYVALAQRKEERKMHLTSQFMQRLAGMRAVPPSAIIGQYQPAAASGYFMAAMP 416
Query: 156 --GLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVG 329
G+ Y P A M P + Q +RP G F Q RP
Sbjct: 417 QQAQGRTAYYTPSPMAPMRPNPRWPLQ------VRPQGAHAAGFQAITGPMRQPAPRPTQ 470
Query: 330 RRGTGPVQQPQQPMPMMXXXMLP 398
R P PQ +P M+P
Sbjct: 471 MRTVNPASVPQ--VPRASQGMMP 491
>gi|112206|pir||A39066 proline-rich protein 4 - rat
Length = 204
Frame 3 hits (HSPs): ________________________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM03894: PROLINE-RICHPROTEIN 1..159
__________________
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 40/108 (37%), Positives = 45/108 (41%), Frame = +3
Query: 108 TPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFF 284
TP+ P P +PP P G QQ QG P PPQ G + Q G P GGP
Sbjct: 29 TPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GPTPPGGPQQK-- 80
Query: 285 VPMVXQGQQGQRPVGRRGTGPVQQPQQPMPMMXXXMLPXGRVYRYPPWP 431
P QQG P G GP Q+P P P P G + PP P
Sbjct: 81 -PPQPGNQQGPPPPG----GPQQKP--PQPGKPQGPPPPGGPQQRPPQP 122
>gi|11127697|gb|AAG31035.1| (AF257501) SYT/SSX4v fusion protein [Homo sapiens]
Length = 369
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 369
0 150 300
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 40/82 (48%), Positives = 43/82 (52%), Frame = +3
Query: 138 YPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMR--PG---------GGPMPSFF 284
YP G GQQ QGPP PQ G+ QQQ PG + PG GGP P F
Sbjct: 267 YPDGNSQYGQQQDAFQGPP----PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQF- 321
Query: 285 VPMVXQGQQGQRPVGRRGT--GPVQQPQQ 365
P QGQ GQ+ G R T GP Q PQQ
Sbjct: 322 -PNYPQGQ-GQQYGGYRPTQPGPPQPPQQ 348
>gi|4508017 ref|NP_003448.1| zinc finger protein 207 [Homo sapiens]
>gi|11426532 ref|XP_008462.1| zinc finger protein 207 [Homo
sapiens] >gi|6137311|sp|O43670|Z207_HUMAN ZINC FINGER PROTEIN 207
>gi|2895870|gb|AAC78561.1| (AF046001) zinc finger transcription
factor [Homo sapiens]
Length = 478
Frame 3 hits (HSPs): ______________ ___________
__________________________________________________
Database sequence: | | | | | 478
0 150 300 450
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.00013, P = 0.00013
Identities = 40/96 (41%), Positives = 49/96 (51%), Frame = +3
Query: 51 EERRARL-QAQFSQMRP--VAI-TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAG 218
EERRA+L + Q + RP I P V P + PP PG+ QQ G PP MPP
Sbjct: 373 EERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPP-QPGIPQQ--QGMRPP--MPPHGQ 427
Query: 219 FGYQQQLVPGMRPGGGPMPSFFVPMV--XQGQQGQRPVGRR 335
+G Q +PG PG P PMV QG + P+G R
Sbjct: 428 YGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMR 468
Score = 103 (36.3 bits), Expect = 0.0046, P = 0.0045
Identities = 32/98 (32%), Positives = 42/98 (42%), Frame = +3
Query: 105 ITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPG-GGPMPSF 281
+ P V P MP PP PG+ + G MMPP G L+PGM PG P+P
Sbjct: 163 LMPGVPPLMPGMPPVMPGMPPGMMPMGG---MMPPGPGI---PPLMPGMPPGMPPPVPRP 216
Query: 282 FVPMVXQGQQGQRP-VGRRGTGPVQQPQQPMPMMXXXMLP 398
+P + Q Q P + R P P P + + P
Sbjct: 217 GIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFP 256
Score = 86 (30.3 bits), Expect = 1.7, P = 0.82
Identities = 38/98 (38%), Positives = 45/98 (45%), Frame = +3
Query: 72 QAQFSQMRPVAITPSVAPRMPLYPPGAPGL--GQQFLYGQGPPAM--MPPQAGFGYQQQL 239
Q Q Q + I P P +P P GAPG+ G L PP M MPP +
Sbjct: 128 QPQPVQPQQGYIPPMAQPGLPPVP-GAPGMPPGIPPLMPGVPPLMPGMPP-----VMPGM 181
Query: 240 VPGMRPGGGPMPSF-FVPMVXQGQQ-GQRP-VGRRGTGPVQQPQ 362
PGM P GG MP +P + G G P V R G P+ Q Q
Sbjct: 182 PPGMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQ 225
>gi|172092|gb|AAA34838.1| (M12780) polyadenylate-binding protein [Saccharomyces
cerevisiae]
Length = 577
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 577
0 150 300 450
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 0.00013, P = 0.00013
Identities = 39/118 (33%), Positives = 49/118 (41%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPG-LGQQFLYGQG 188
AGKPLYVA+AQRK+ RR++L Q + + A R G PG YG
Sbjct: 388 AGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAARAAA-AAGMPGQFMPPMFYGVM 446
Query: 189 PPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFV-PMVXQGQQGQRPVGRRGTGPVQQPQQ 365
PP +P Q + GM G P P F P+ QG P Q +Q
Sbjct: 447 PPRGVPFNGPNPQQMNPMGGMPKNGMP-PQFRNGPVYGVPPQGGFPRNANDNNQFYQQKQ 505
>gi|461699|sp|P35085|CBPA_DICDI CALCIUM-BINDING PROTEIN
>gi|416313|gb|AAA03471.1| (U03413) calcium binding protein
[Dictyostelium discoideum]
Length = 467
Frame 3 hits (HSPs): ____________________ ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 467
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00018: EF-hand calcium-binding domain 448..460
DOMO DM00250: 45..80
DOMO DM01949: 82..134
DOMO DM02988: ANNEXINVII 136..177
DOMO DM00116: GLUTENIN 197..240
DOMO DM00116: GLUTENIN 288..354
DOMO DM00011: CALMODULINREPEAT 429..460
Entrez Calcium binding region: POTENTIAL. 412..423
PFAM efhand: EF hand 403..431
PFAM efhand: EF hand 439..467
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 1..170
PRODOM PD001091: ANX7(3) CBPA(3) LEG3(3) 177..228
PRODOM PD001091: ANX7(3) CBPA(3) LEG3(3) 231..273
PRODOM PD001091: ANX7(3) CBPA(3) LEG3(3) 281..344
PRODOM PD076511: CBPA_DICDI 346..466
PROSITE EF_HAND: EF-hand calcium-binding domain. 412..424
__________________
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.00015, P = 0.00015
Identities = 35/90 (38%), Positives = 39/90 (43%), Frame = +3
Query: 111 PSVAPRMPLYPPGAPGLGQQFLYGQ-GPPAMMPPQAGFGYQ---QQLVPGMRPGGGP-MP 275
P P P YPP PG Q+ Q G P P Q G Q QQ PG P P P
Sbjct: 96 PPQQPGQPGYPPQQPGQSGQYPPQQPGQPGYPPQQPGAPGQYPPQQGQPGQYPPQQPGQP 155
Query: 276 SFFVPMVXQGQQGQRPVGRRGTGPVQQPQQP 368
+ P QGQ + G+ G P QQP QP
Sbjct: 156 GQYPPQ-QQGQYPPQQPGQPGAYPPQQPGQP 185
Score = 102 (35.9 bits), Expect = 0.0068, P = 0.0067
Identities = 39/91 (42%), Positives = 44/91 (48%), Frame = +3
Query: 111 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFG-Y--QQQLV--PGMRPGGGPMP 275
P V P+ YP P +G QG P PPQ G Y QQQ V PG +P G P
Sbjct: 220 PGVPPQQGAYPGQQPPMGAY--PPQGQPGAYPPQGQPGAYPPQQQQVAYPGQQPPMGAYP 277
Query: 276 SFFVPMVXQGQQGQRPVGRRGTGPVQQ---PQQPMPM 377
GQQG P G++G P QQ P QP PM
Sbjct: 278 P--QQGAYPGQQGAYP-GQQGAYPGQQGAYPGQP-PM 310
Score = 97 (34.1 bits), Expect = 0.051, P = 0.049
Identities = 43/117 (36%), Positives = 48/117 (41%), Frame = +3
Query: 84 SQMRPVAITPSVAPRMPLYPPGAPGL------GQQFLYGQGPPAMMPPQAGFGY--QQQL 239
SQ P A P + P PGAPG G Q G P PPQ Y QQ
Sbjct: 33 SQSTPGA--PGAPGQYPPQQPGAPGSNLPPYPGTQQPGAPGAPGQYPPQQPGQYPPQQPG 90
Query: 240 VPGMRPGGGP-MPSFFVPMVXQGQQGQRPVGRRGTGPVQQPQQP-MPMMXXXMLPXGRVY 413
PG P P P + P GQ GQ P + G P PQQP P G+
Sbjct: 91 APGQYPPQQPGQPGY--PPQQPGQSGQYPPQQPGQ-PGYPPQQPGAPGQYPPQ--QGQPG 145
Query: 414 RYPP 425
+YPP
Sbjct: 146 QYPP 149
Score = 88 (31.0 bits), Expect = 0.91, P = 0.60
Identities = 40/96 (41%), Positives = 46/96 (47%), Frame = +3
Query: 81 FSQMRPVAI--TPSVAPRMPLYPPGAPGLGQQFLYGQ-GPPAM-MPPQAGFGYQQQLVPG 248
+SQM PV + TP AP PGAPG Q+ Q G P +PP G QQ PG
Sbjct: 17 YSQM-PVKVMGTPG-APGSQS-TPGAPGAPGQYPPQQPGAPGSNLPPYPGT--QQPGAPG 71
Query: 249 MRPGGGP--MPSFFVPMVXQGQQGQRPVGRRGTGPVQQPQQP 368
PG P P + P G GQ P + G P PQQP
Sbjct: 72 A-PGQYPPQQPGQYPPQ-QPGAPGQYPPQQPGQ-PGYPPQQP 110
Score = 87 (30.6 bits), Expect = 1.3, P = 0.72
Identities = 29/85 (34%), Positives = 31/85 (36%), Frame = +3
Query: 111 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVP 290
P P P YPP PG Q+ QG P PPQ Q PG P P P
Sbjct: 117 PPQQPGQPGYPPQQPGAPGQYPPQQGQPGQYPPQ------QPGQPGQYP---PQQQGQYP 167
Query: 291 MVXQGQQGQRPVGRRGTGPVQQPQQ 365
GQ G P + G PQQ
Sbjct: 168 PQQPGQPGAYPPQQPGQPGAYPPQQ 192
Score = 87 (30.6 bits), Expect = 1.3, P = 0.72
Identities = 37/100 (37%), Positives = 44/100 (44%), Frame = +3
Query: 126 RMPLYPPGAPGL-GQQFLYGQ-GPPAMMPPQA-GF-GYQQQLVPGMRPGGGP-MPSFFVP 290
+MP+ G PG G Q G G P PPQ G G PG + G P P + P
Sbjct: 19 QMPVKVMGTPGAPGSQSTPGAPGAPGQYPPQQPGAPGSNLPPYPGTQQPGAPGAPGQYPP 78
Query: 291 MVXQGQQGQRPVGRRGTGPVQQPQQP-MPMMXXXMLPXGRVYRYPP 425
GQ + G G P QQP QP P P G+ +YPP
Sbjct: 79 Q-QPGQYPPQQPGAPGQYPPQQPGQPGYPPQQ----P-GQSGQYPP 118
Score = 82 (28.9 bits), Expect = 5.3, P = 1.0
Identities = 31/88 (35%), Positives = 35/88 (39%), Frame = +3
Query: 111 PSVAPRMPLYPP-GAPGLGQQFLYGQGPPAMMPPQ---AGFGYQQQLVPGMRPGGGPMPS 278
P P M YPP G PG QG P PPQ + QQ + P G P
Sbjct: 230 PGQQPPMGAYPPQGQPGAYPP----QGQPGAYPPQQQQVAYPGQQPPMGAYPPQQGAYPG 285
Query: 279 FFVPMVXQGQQGQRPVGRRGTGPVQQPQQPMP 374
GQQG P G++G P Q P P
Sbjct: 286 --QQGAYPGQQGAYP-GQQGAYPGQPPMGAYP 314
>gi|12741064 ref|XP_008749.2| synovial sarcoma, translocated to X chromosome
[Homo sapiens]
Length = 310
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | | 310
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00017, P = 0.00017
Identities = 39/82 (47%), Positives = 43/82 (52%), Frame = +3
Query: 138 YPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMR--PG---------GGPMPSFF 284
YP G GQQ QGPP PQ G+ QQQ PG + PG GGP P +
Sbjct: 214 YPVGNSQYGQQQDAYQGPP----PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQY- 268
Query: 285 VPMVXQGQQGQRPVGRRGT--GPVQQPQQ 365
P QGQ GQ+ G R T GP Q PQQ
Sbjct: 269 -PNYPQGQ-GQQYGGYRPTQPGPPQPPQQ 295
>gi|64970|emb|CAA40721.1| (X57483) polyA binding protein [Xenopus laevis]
Length = 633
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 633
0 150 300 450 600
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.00018, P = 0.00018
Identities = 47/135 (34%), Positives = 59/135 (43%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAI-TPSVAPRMPLYPPGA-------PGLG 164
A KPLYVALAQRKEER+A L Q+ Q M V + P + P P PP + P
Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYFMAAIPPAQN 416
Query: 165 QQFLYGQGPPAMMPP------QAGFGYQQQLVPG-MRPGGGPMPSFFVPMVXQGQQGQRP 323
+ Y G A + P Q + Q +PG +RP P P F M Q R
Sbjct: 417 RAAYYPPGQIAQLSPSPRWTAQGARPHPFQNMPGAIRPTA-PRPPTFSTMRPASNQVPRV 475
Query: 324 VG-RRGTGPVQQPQQPMP 374
+ +R Q P P
Sbjct: 476 MSAQRVANTSTQTMGPRP 493
>gi|4504715 ref|NP_003810.1| poly(A)-binding protein, cytoplasmic 4 (inducible
form); inducible poly(A)-binding protein [Homo sapiens]
>gi|11427851 ref|XP_002105.1| poly(A)-binding protein, cytoplasmic
4 (inducible form) [Homo sapiens] >gi|12229875|sp|Q13310|PAB4_HUMAN
POLYADENYLATE-BINDING PROTEIN 4 (POLY(A) BINDING PROTEIN 4) (PABP
4) (INDUCIBLE POLY(A)-BINDING PROTEIN) (IPABP) (ACTIVATED-PLATELET
PROTEIN-1) (APP-1) >gi|1163177|gb|AAC50350.1| (U33818) inducible
poly(A)-binding protein [Homo sapiens] >gi|2801403|gb|AAB97309.1|
(U75686) polyadenylate binding protein [Homo sapiens]
>gi|1585757|prf||2201474A inducible poly(A)-binding protein [Homo
sapiens]
Length = 644
Frame 3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 644
0 150 300 450 600
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.00019, P = 0.00019
Identities = 42/109 (38%), Positives = 54/109 (49%), Frame = +3
Query: 6 RFAG-KPLYVALAQRKEERRARLQAQFSQ-MRPVAITPSVAPRMPLYPPGAPGLGQQFL- 176
R G KPLYVALAQRKEER+A L Q+ Q + + P+ A + + P A G +
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI-LNQFQPAAGGYFVPAVP 414
Query: 177 YGQG-PPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGR 332
QG PP P Q Q + P + GG P +P + Q G RP R
Sbjct: 415 QAQGRPPYYTPNQLA---QMRPNPRWQQGGRPQGFQGMPSAIR-QSGPRPTLR 463
>gi|3915026|sp|Q15532|SSXT_HUMAN SSXT PROTEIN (SYNOVIAL SARCOMA, TRANSLOCATED
TO X CHROMOSOME) (SYT PROTEIN)
Length = 387
Frame 3 hits (HSPs): ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 387
0 150 300
__________________
Annotated Domains:
Entrez other site: BREAKPOINT FOR TRANSLOCATION 335..336
Entrez other site: BREAKPOINT FOR TRANSLOCATION 379..380
Entrez other site: SH2-BINDING (POTENTIAL). 50..53
Entrez other site: SH2-BINDING (POTENTIAL). 343..346
Entrez Domain: SH3-BINDING (POTENTIAL). 361..370
Entrez other site: SH2-BINDING (POTENTIAL). 382..385
Entrez Repetitive region: 2 X 13 AA IMPERFECT T 313..338
Entrez Repetitive region: 1. 313..325
Entrez Repetitive region: 2. 326..338
Entrez Domain: POLY-PRO. 95..99
Entrez Domain: POLY-GLN. 317..320
PRODOM PD020165: SSXT(2) O23091(1) 1..88
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 90..319
PRODOM PD025861: SSXT(2) 337..359
__________________
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.00019, P = 0.00019
Identities = 39/82 (47%), Positives = 43/82 (52%), Frame = +3
Query: 138 YPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMR--PG---------GGPMPSFF 284
YP G GQQ QGPP PQ G+ QQQ PG + PG GGP P +
Sbjct: 291 YPDGNSQYGQQQDAYQGPP----PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQY- 345
Query: 285 VPMVXQGQQGQRPVGRRGT--GPVQQPQQ 365
P QGQ GQ+ G R T GP Q PQQ
Sbjct: 346 -PNYPQGQ-GQQYGGYRPTQPGPPQPPQQ 372
>gi|5032125 ref|NP_005628.1| synovial sarcoma, translocated to X chromosome
[Homo sapiens] >gi|531106|emb|CAA55792.1| (X79201) translocated in
synovial sarcoma [Homo sapiens]
Length = 391
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 391
0 150 300
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.00019, P = 0.00019
Identities = 39/82 (47%), Positives = 43/82 (52%), Frame = +3
Query: 138 YPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMR--PG---------GGPMPSFF 284
YP G GQQ QGPP PQ G+ QQQ PG + PG GGP P +
Sbjct: 295 YPDGNSQYGQQQDAYQGPP----PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQY- 349
Query: 285 VPMVXQGQQGQRPVGRRGT--GPVQQPQQ 365
P QGQ GQ+ G R T GP Q PQQ
Sbjct: 350 -PNYPQGQ-GQQYGGYRPTQPGPPQPPQQ 376
>gi|1082811|pir||S46269 synovial sarcoma translocation protein - human
Length = 404
Frame 3 hits (HSPs): ____________
Annotated Domains: _______ ______
__________________________________________________
Database sequence: | | | | 404
0 150 300
__________________
Annotated Domains:
DOMO DM01282: 192..238
DOMO DM00116: GLUTENIN 335..378
__________________
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.00020, P = 0.00020
Identities = 39/82 (47%), Positives = 43/82 (52%), Frame = +3
Query: 138 YPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMR--PG---------GGPMPSFF 284
YP G GQQ QGPP PQ G+ QQQ PG + PG GGP P +
Sbjct: 308 YPDGNSQYGQQQDAYQGPP----PQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQY- 362
Query: 285 VPMVXQGQQGQRPVGRRGT--GPVQQPQQ 365
P QGQ GQ+ G R T GP Q PQQ
Sbjct: 363 -PNYPQGQ-GQQYGGYRPTQPGPPQPPQQ 389
>gi|10048444 ref|NP_065254.1| bromodomain-containing 4; bromodomain-containing
5 [Mus musculus] >gi|9931486|gb|AAG02191.1|AF273217_1 (AF273217)
cell proliferation related protein CAP [Mus musculus]
Length = 1400
Frame 3 hits (HSPs): __ _____
__________________________________________________
Database sequence: | | | | 1400
0 500 1000
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.00023, P = 0.00023
Identities = 45/116 (38%), Positives = 55/116 (47%), Frame = +3
Query: 96 PVAITPSVA----PRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGG 263
P + PSV P PL PP P + QQ L Q PP PPQ QQQ P RP
Sbjct: 943 PTPLLPSVKVQSQPPPPLPPPPHPSVQQQQLQPQPPPPP-PPQPQPPPQQQHQPPPRPVH 1001
Query: 264 GPMPSFFVPMVXQGQQGQRPVGRRGTGPV--QQPQQPMPMMXXXMLPXGRVYRYPPWPQH 437
+PS +P QQ P G++ T P QQP P P P +V ++ P P+H
Sbjct: 1002 --LPS--MPFSAHIQQPPPPPGQQPTHPPPGQQPPPPQPAK-----PQ-QVIQHHPSPRH 1051
Query: 438 AK 443
K
Sbjct: 1052 HK 1053
Score = 85 (29.9 bits), Expect = 8.9, Sum P(2) = 1.0
Identities = 35/100 (35%), Positives = 40/100 (40%), Frame = +3
Query: 144 PGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRP 323
P P L + Q PP + PP QQQL P P P P P Q Q RP
Sbjct: 942 PPTPLLPSVKVQSQPPPPLPPPPHPSVQQQQLQPQPPPPPPPQPQ--PPPQQQHQPPPRP 999
Query: 324 VGRRG---TGPVQQPQQPMPMMXXXMLPXGRVYRYPPWPQHAK 443
V + +QQP P P P G+ PP PQ AK
Sbjct: 1000 VHLPSMPFSAHIQQPPPP-PGQQPTHPPPGQ---QPPPPQPAK 1038
Score = 37 (13.0 bits), Expect = 8.9, Sum P(2) = 1.0
Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = +3
Query: 108 TPSVAPRMPLYPPGAP 155
TPS P P PP AP
Sbjct: 250 TPSPVPPQPP-PPPAP 264
>gi|1352709|sp|P20965|PABP_XENLA POLYADENYLATE-BINDING PROTEIN (POLY(A) BINDING
PROTEIN) (PABP) >gi|538582|pir||DNXLPA polyadenylate-binding
protein - African clawed frog >gi|623598|gb|AAA60936.1| (M27072)
poly(A)-binding protein [Xenopus laevis]
Length = 633
Frame 3 hits (HSPs): ___________
Annotated Domains: ______________________ ___________________________
__________________________________________________
Database sequence: | | | | | | 633
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00030A: Eukaryotic RNA-binding region 13..31
BLOCKS BL00030B: Eukaryotic RNA-binding region 333..342
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 13..18
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 52..59
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 101..106
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 138..145
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 193..198
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 231..238
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 296..301
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 333..340
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 13..84
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 101..170
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 193..263
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 296..365
PFAM PABP: Poly-adenylate binding protein, un 541..612
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 14..50
PRODOM PD060589: PABP(4) PAB1(2) 52..96
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 102..132
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 137..186
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 194..228
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 230..278
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 297..330
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 332..381
PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 383..456
PRODOM PD012528: PAB1(2) PABP(1) Q62029(1) 458..525
PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 527..553
PRODOM PD002964: PABP(4) PAB1(2) 555..622
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 253..260
PROSITE RNP_1: Eukaryotic putative RNA-binding r 138..145
PROSITE RNP_1: Eukaryotic putative RNA-binding r 231..238
PROSITE RNP_1: Eukaryotic putative RNA-binding r 333..340
__________________
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.00024, P = 0.00024
Identities = 47/135 (34%), Positives = 59/135 (43%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAI-TPSVAPRMPLYPPGA-------PGLG 164
A KPLYVALAQRKEER+A L Q+ Q M V + P + P P PP + P
Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYFMAAIPPAQN 416
Query: 165 QQFLYGQGPPAMMPP------QAGFGYQQQLVPG-MRPGGGPMPSFFVPMVXQGQQGQRP 323
+ Y G A + P Q + Q +PG +RP P P F M Q R
Sbjct: 417 RAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTA-PRPPTFSTMRPASNQVPRV 475
Query: 324 VG-RRGTGPVQQPQQPMP 374
+ +R Q P P
Sbjct: 476 MSAQRVANTSTQTMGPRP 493
>gi|6321013 ref|NP_011092.1| Poly(A) binding protein, cytoplasmic and nuclear;
Pab1p [Saccharomyces cerevisiae] >gi|417441|sp|P04147|PABP_YEAST
POLYADENYLATE-BINDING PROTEIN, CYTOPLASMIC AND NUCLEAR (PABP) (ARS
CONSENSUS BINDING PROTEIN ACBP-67) (POLYADENYLATE TAIL-BINDING
PROTEIN) >gi|1070599|pir||DNBYPA polyadenylate-binding protein -
yeast (Saccharomyces cerevisiae) >gi|171967|gb|AAA34787.1| (M13371)
poly (A)-binding protein [Saccharomyces cerevisiae]
>gi|218386|dbj|BAA00017.1| (D00023) polyadenylate-binding protein
[Saccharomyces cerevisiae] >gi|603406|gb|AAB64692.1| (U18922)
Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 577
0 150 300 450
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.00027, P = 0.00027
Identities = 42/118 (35%), Positives = 52/118 (44%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQF---SQMRPVAITPSVAPRMPLYPPGAPG-LGQQFLY 179
AGKPLYVA+AQRK+ RR++L Q +QMR T + A G PG Y
Sbjct: 388 AGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAA----GMPGQFMPPMFY 443
Query: 180 GQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFV-PMVXQGQQGQRPVGRRGTGPVQQ 356
G PP +P Q + GM G P P F P+ QG P Q
Sbjct: 444 GVMPPRGVPFNGPNPQQMNPMGGMPKNGMP-PQFRNGPVYGVPPQGGFPRNANDNNQFYQ 502
Query: 357 PQQ 365
+Q
Sbjct: 503 QKQ 505
>gi|6756051 ref|NP_035881.1| zinc finger protein 207 [Mus musculus]
>gi|7513880|pir||JE0367 zinc finger protein - mouse
>gi|4153886|dbj|BAA37094.1| (AB013357) 49 kDa zinc finger protein
[Mus musculus]
Length = 460
Frame 3 hits (HSPs): ____________ ___________
__________________________________________________
Database sequence: | | | | | 460
0 150 300 450
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00032, P = 0.00032
Identities = 40/96 (41%), Positives = 48/96 (50%), Frame = +3
Query: 51 EERRARL-QAQFSQMRP--VAI-TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAG 218
EERRA+L + Q + RP I P V P + PP PGL QQ PP MPP
Sbjct: 355 EERRAQLPKYQRNLPRPGQTPIGNPPVGPIGGMMPP-QPGLPQQ--QAMRPP--MPPHGQ 409
Query: 219 FGYQQQLVPGMRPGGGPMPSFFVPMV--XQGQQGQRPVGRR 335
+G Q +PG PG P PMV QG + P+G R
Sbjct: 410 YGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMR 450
Score = 85 (29.9 bits), Expect = 2.2, P = 0.89
Identities = 34/101 (33%), Positives = 42/101 (41%), Frame = +3
Query: 111 PSVAPRMPLYPPGAP-GLGQQFLYGQG-------PP--AMMPPQAGFGYQQQLVPGMRPG 260
P + P MP PG P GL Q Y Q P MMPP G L+PGM P
Sbjct: 168 PPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGI---PPLMPGMPP- 223
Query: 261 GGPMPSFFVPMVXQGQQGQRP-VGRRGTGPVQQPQQPMPMMXXXMLP 398
P+P +P + Q Q P + R P P P + + P
Sbjct: 224 --PVPRPGIPPMTQAQAVSAPGILNRPPAPTAAVPAPQPPVTKPLFP 268
>gi|7212794|dbj|BAA92375.1| (AB032196) zinc finger transcription factor ZNF207
[Mus musculus]
Length = 495
Frame 3 hits (HSPs): ____________ __________
__________________________________________________
Database sequence: | | | | | 495
0 150 300 450
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00035, P = 0.00035
Identities = 40/96 (41%), Positives = 48/96 (50%), Frame = +3
Query: 51 EERRARL-QAQFSQMRP--VAI-TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAG 218
EERRA+L + Q + RP I P V P + PP PGL QQ PP MPP
Sbjct: 390 EERRAQLPKYQRNLPRPGQTPIGNPPVGPIGGMMPP-QPGLPQQ--QAMRPP--MPPHGQ 444
Query: 219 FGYQQQLVPGMRPGGGPMPSFFVPMV--XQGQQGQRPVGRR 335
+G Q +PG PG P PMV QG + P+G R
Sbjct: 445 YGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMR 485
Score = 91 (32.0 bits), Expect = 0.39, P = 0.32
Identities = 35/105 (33%), Positives = 43/105 (40%), Frame = +3
Query: 111 PSVAPRMPLYPPGAP-GLGQQFLYGQG-------PP--AMMPPQAGFGYQQQLVPGMRPG 260
P + P MP PG P GL Q Y Q P MMPP G L+PGM PG
Sbjct: 168 PPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGI---PPLMPGMPPG 224
Query: 261 -GGPMPSFFVPMVXQGQQGQRP-VGRRGTGPVQQPQQPMPMMXXXMLP 398
P+P +P + Q Q P + R P P P + + P
Sbjct: 225 MPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTAAVPAPQPPVTKPLFP 272
>gi|1079271|pir||A48048 egg envelope protein wf - winter flounder
>gi|425356|gb|AAC59642.1| (U03674) zona pellucida protein
[Pseudopleuronectes americanus]
Length = 509
Frame 3 hits (HSPs): ___________
Annotated Domains: ________________________________
__________________________________________________
Database sequence: | | | | | 509
0 150 300 450
__________________
Annotated Domains:
DOMO DM01748: ZPDOMAIN 196..509
Entrez domain: trefoil homology #label TRF5 186..221
PROSITE ALDEHYDE_DEHYDR_CYS: Aldehyde dehydrogen 254..265
__________________
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00037, P = 0.00037
Identities = 40/111 (36%), Positives = 48/111 (43%), Frame = +3
Query: 42 QRKEERRARLQAQFSQMRPVAITPSVAPRMPLYP--PGAPGLGQQFLYGQGPPAMMPPQA 215
QR ++R RL FS P A P P+ P YP P P QQ Y Q P PQ
Sbjct: 57 QRYVQQRRRLHHDFSPQNPGAEPPQT-PQQPTYPQQPQQPQQPQQPKYPQQPQQPQQPQQ 115
Query: 216 GFGYQQQLVPGMRPGGGPMPSFFVPMVXQGQQGQRPVGRRGTGPVQQPQQPMP 374
Y QQ P +P P + P Q QQ Q+P + QQP+ P P
Sbjct: 116 P-KYPQQ--P-QQPQQPQQPKY--PQ--QPQQPQQPQQPKYPQQPQQPKNPQP 160
>gi|12229876|sp|Q15097|PAB2_HUMAN POLYADENYLATE-BINDING PROTEIN 2 (POLY(A)
BINDING PROTEIN 2) (PABP 2) >gi|1082703|pir||S52491 polyadenylate
binding protein II - human >gi|693937|emb|CAA88401.1| (Z48501)
polyadenylate binding protein II [Homo sapiens]
Length = 522
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 522
0 150 300 450
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00038, P = 0.00038
Identities = 49/129 (37%), Positives = 59/129 (45%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPSVAPRMPLYPPGAPGLGQQFLYG-- 182
A KPLYVALAQRKEER+A L Q+ Q M V P+ P + Y P AP G F+
Sbjct: 334 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPN--PVINPYQP-APPSGY-FIAAIP 389
Query: 183 --QGPPAMMPPQAGFGYQQQLVPGMR---PGGGPMPSFFVPMVXQGQQGQRPVGRRGTGP 347
Q A PP QL P R G P P+ V QGQ P+
Sbjct: 390 QTQNRAAYYPPSQ----IAQLRPSPRWTAQGARPHPAVHV-------QGQEPLTASMLAS 438
Query: 348 VQQPQQPMPMMXXXMLP 398
PQ+ M+ + P
Sbjct: 439 AP-PQEQKQMLGERLFP 454
>gi|6981414 ref|NP_036764.1| proline-rich protein, salivary [Rattus norvegicus]
>gi|92651|pir||A30496 proline-rich protein 13 - rat
>gi|206710|gb|AAA42063.1| (M64792) salivary proline-rich protein
[Rattus norvegicus]
Length = 164
Frame 3 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 164
0 50 100 150
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.00095, P = 0.00095
Identities = 36/98 (36%), Positives = 45/98 (45%), Frame = +3
Query: 75 AQFSQMRPVAITPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGM 251
AQ ++++ + TP+ P P +PP P G QQ QG P PPQ G + Q G
Sbjct: 16 AQEAELQSLDQTPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GP 69
Query: 252 RPGGGPMPSFFVPMVXQGQQGQRPVGRRGTGPVQQPQQP 368
P GGP P QG P G GP Q+P QP
Sbjct: 70 PPPGGPQQK---PPQPGKPQGPPPPG----GPQQKPPQP 101
>gi|6983758|emb|CAB75397.1| (AL139298) putative membrane protein [Streptomyces
coelicolor A3(2)]
Length = 226
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 226
0 50 100 150 200
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.0018, P = 0.0018
Identities = 35/86 (40%), Positives = 40/86 (46%), Frame = +3
Query: 144 PGAPG-LGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGG----PMPSFFVPMVXQ-G 305
P PG GQ YGQ PP PQ G+GY QQ P +PG G P P G
Sbjct: 13 PQQPGPYGQPGPYGQQPP--QAPQPGYGYPQQTPPPQQPGYGYPQQPQQGGVPPQAPPYG 70
Query: 306 QQ---GQRP-VGRR---GTGPVQQPQQP 368
QQ GQ+P G++ G P PQ P
Sbjct: 71 QQPGYGQQPPYGQQPPYGQQPYGMPQPP 98
>gi|3551201|dbj|BAA32799.1| (AB012575) SSX-HSTT [Homo sapiens]
Length = 117
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0021, P = 0.0021
Identities = 34/71 (47%), Positives = 37/71 (52%), Frame = +3
Query: 165 QQFLYGQGPPAMM--PPQAGFGYQQQLVPGMRPG-----GGPMPSFFVPMVXQGQQGQRP 323
QQ Y QGPP PPQ QQ PG + G GGP P + P QGQ GQ+
Sbjct: 2 QQDAY-QGPPPQQGYPPQQQHPGQQGY-PGQQQGYGPSQGGPGPQY--PNYPQGQ-GQQY 56
Query: 324 VGRRGT--GPVQQPQQ 365
G R T GP Q PQQ
Sbjct: 57 GGYRPTQPGPPQPPQQ 72
>gi|11602912 ref|NP_062603.1| proline-rich protein B, salivary; proline-rich
salivary protein [Mus musculus] >gi|91204|pir||A29149 proline-rich
protein - mouse >gi|200539|gb|AAA40000.1| (M11900) 15-kDa
proline-rich salivary protein [Mus musculus]
Length = 147
Frame 3 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.0023, P = 0.0023
Identities = 39/108 (36%), Positives = 44/108 (40%), Frame = +3
Query: 108 TPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFF 284
TP+ P P +PP P G QQ QG P PPQ G + Q G P GGP
Sbjct: 29 TPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GPPPPGGPQQK-- 80
Query: 285 VPMVXQGQQGQRPVGRRGTGPVQQPQQPMPMMXXXMLPXGRVYRYPPWP 431
P QQG P G GP Q+P P P G + PP P
Sbjct: 81 -PPQPGNQQGPPPPG----GPQQKP--PQSGKPQGPPPPGGPQQRPPQP 122
>gi|5032069 ref|NP_005841.1| splicing factor 3b, subunit 4, 49kD;
spliceosome-associated protein (U2 snRNP) [Homo sapiens]
>gi|11426070 ref|XP_001943.1| splicing factor 3b, subunit 4, 49kD
[Homo sapiens] >gi|2500587|sp|Q15427|SP49_HUMAN SPLICEOSOME
ASSOCIATED PROTEIN 49 (SAP 49) (SF3B53) >gi|1082799|pir||A54964
spliceosome-associated protein SAP-49 - human
>gi|556217|gb|AAA60300.1| (L35013) spliceosomal protein [Homo
sapiens]
Length = 424
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 424
0 150 300
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.0038, P = 0.0038
Identities = 37/111 (33%), Positives = 46/111 (41%), Frame = +3
Query: 96 PVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGF-GYQQQLVPGMRPGGGPM 272
P A+ P + P MP PP PG G GPP+ P AG G+ PGG P
Sbjct: 250 PGALPPGIPPAMPP-PPMPPGAA-----GHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPH 303
Query: 273 PSFF-VPMVXQGQQGQ-RP-VGRRGTGPVQQPQQPMPMMXXXMLPXGRVYRYPPW 428
P + + G G P G G+G P+ P M P G R PP+
Sbjct: 304 PGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPF 358
Score = 85 (29.9 bits), Expect = 1.9, P = 0.86
Identities = 35/98 (35%), Positives = 44/98 (44%), Frame = +3
Query: 138 YPPGA---PGLGQQFL-----YGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPSFFVPM 293
+PPG PG+ Q L +G G P PP +G + PGM P GP P P
Sbjct: 296 FPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGM-PHPGPPPMGMPP- 353
Query: 294 VXQGQQGQRPVGRRGTGPVQQPQQPMPMMXXXMLPXGRVYRYPPWP 431
+G P+G G P + P P+M P G Y PP P
Sbjct: 354 --RGPPFGSPMGHPGPMPPHGMRGPPPLMP----PHG--YTGPPRP 391
WARNING: HSPs involving 316 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.90
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.322 0.141 0.453
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.318 0.127 0.471
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.346 0.153 0.547
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.340 0.157 0.629
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.317 0.131 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.335 0.142 0.523
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 153 145 10. 74 3 12 22 0.12 33
30 0.11 36
+2 0 154 149 10. 74 3 12 22 0.092 34
30 0.12 36
+1 0 154 148 10. 74 3 12 22 0.091 34
30 0.11 36
-1 0 154 147 10. 74 3 12 22 0.12 33
30 0.11 36
-2 0 154 150 10. 74 3 12 22 0.090 34
30 0.12 36
-3 0 153 145 10. 74 3 12 22 0.12 33
30 0.11 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 366
No. of states in DFA: 580 (57 KB)
Total size of DFA: 211 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 191.72u 1.41s 193.13t Elapsed: 00:00:34
Total cpu time: 191.80u 1.45s 193.25t Elapsed: 00:00:34
Start: Mon Oct 1 20:49:23 2001 End: Mon Oct 1 20:49:57 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000