proteins
| 23 proteins |
U | COG2948 | Type IV secretory pathway, VirB10 components | Help | |
|---|---|---|---|---|---|
| 4 from | query genome Mesorhizobium loti (Rhizobiales | Alphaproteobacteria) | ||||
| mll9603 mlr6405 mlr6955 mlr9259 | ||||
171 letters (r) 0
0 815 = ||| 1 mlr6955 (171) = 207
210
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mlr6955
(171 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
mlr6955 318 4e-87
mll9603 239 2e-63
RSc2575 171 7e-43
mlr6405 163 2e-40
CC2685 146 2e-35
AGpT71 124 1e-28
XFa0040 122 3e-28
XF2049 121 8e-28
CC2422 89 5e-18
XFa0014 81 1e-15
AGpA231 81 1e-15
SMa1303 79 5e-15
mlr9259 77 2e-14
BMEII0034 74 1e-13
jhp0036 67 2e-11
HP0042 66 3e-11
AGpT13 59 4e-09
RP291 49 5e-06
jhp0476_2 47 3e-05
HP0527_2 46 3e-05
RC0389 44 1e-04
SPBC428.11 33 0.39
PA1443 30 2.0
Cgl1293 30 3.1
NMB0261 30 3.7
BH0295 29 3.8
all3984 29 6.0
APE1819 28 8.9
sll0436 28 9.5
# >mlr6955
# Length = 171
#
# Score = 318 bits (815), Expect = 4e-87
# Identities = 171/171 (100%), Positives = 171/171 (100%)
#
# Query: 1 MRKIAYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVF 60
# MRKIAYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVF
# Sbjct: 1 MRKIAYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVF 60
#
# Query: 61 PNGRSIVLERQPGTDAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVR 120
# PNGRSIVLERQPGTDAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVR
# Sbjct: 61 PNGRSIVLERQPGTDAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVR 120
#
# Query: 121 ALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDLMLEPYGG 171
# ALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDLMLEPYGG
# Sbjct: 121 ALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDLMLEPYGG 171
#
#
# >mll9603
# Length = 378
#
# Score = 239 bits (611), Expect = 2e-63
# Identities = 132/157 (84%), Positives = 148/157 (94%)
#
# Query: 15 MTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGT 74
# +TEN+YDSPTGRSLLIPQGTR IGQYDN VG GQRRVLLVW+RL+FPNGRSIVLERQPG
# Sbjct: 222 VTENIYDSPTGRSLLIPQGTRAIGQYDNAVGSGQRRVLLVWNRLIFPNGRSIVLERQPGA 281
#
# Query: 75 DAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVG 134
# DAQGYAGLEDGVDYHWGELF AAAL+T+LSVGA+AGSS Q+SDIVRALR GASDS+SQVG
# Sbjct: 282 DAQGYAGLEDGVDYHWGELFKAAALSTVLSVGAQAGSSDQDSDIVRALRSGASDSVSQVG 341
#
# Query: 135 QQIVQRQLNIAPTLTIRPGVNVRVVVTRDLMLEPYGG 171
# QQ+VQ+QL++APTLT+RPG VRV+VTRDL+LEPYGG
# Sbjct: 342 QQVVQQQLDMAPTLTVRPGFPVRVLVTRDLVLEPYGG 378
#
#
# >RSc2575
# Length = 425
#
# Score = 171 bits (433), Expect = 7e-43
# Identities = 86/158 (54%), Positives = 115/158 (72%), Gaps = 3/158 (1%)
#
# Query: 15 MTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGT 74
# +TE VYD+ TGR LLIPQG+R++G+Y++ V +GQ RV +VW+R++ P+ S+ L+ GT
# Sbjct: 257 VTEPVYDTATGRFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLAGT 316
#
# Query: 75 DAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESD---IVRALRGGASDSLS 131
# D GYAGLED VDYHWG +F AALTT+L VGAE + D IV A R A DS++
# Sbjct: 317 DPAGYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSIN 376
#
# Query: 132 QVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDLMLEPY 169
# QVGQ++ +R +NI PTLT RPG+ VR++V RDL+L PY
# Sbjct: 377 QVGQEMTRRNMNIQPTLTERPGLPVRIIVNRDLVLRPY 414
#
#
# >mlr6405
# Length = 409
#
# Score = 163 bits (412), Expect = 2e-40
# Identities = 80/155 (51%), Positives = 109/155 (69%)
#
# Query: 15 MTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGT 74
# +TENV+D+ TG +LIPQG+R+IG YD+ V FGQRR LLVW R++ P+G SI ++ P T
# Sbjct: 253 VTENVHDTVTGSIVLIPQGSRLIGTYDSVVAFGQRRALLVWQRIILPDGSSIEIDNLPAT 312
#
# Query: 75 DAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVG 134
# D GYAGLED VD+H +L AL T+L VG E ESD+V+A+R ++SQ G
# Sbjct: 313 DTAGYAGLEDKVDFHTWQLIKGVALATLLGVGTELSFGENESDLVKAIRESTQQNISQAG 372
#
# Query: 135 QQIVQRQLNIAPTLTIRPGVNVRVVVTRDLMLEPY 169
# Q+I ++ LNI PT+ +RPG +RV+V +DL+L PY
# Sbjct: 373 QRITEKNLNIQPTIIVRPGWPLRVIVHKDLVLRPY 407
#
#
# >CC2685
# Length = 418
#
# Score = 146 bits (369), Expect = 2e-35
# Identities = 82/155 (52%), Positives = 106/155 (67%)
#
# Query: 15 MTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGT 74
# +TENV+DS TGR LLIPQG R+IG YD+ V FGQRR LLVW R++ P+G SI L+ P T
# Sbjct: 261 VTENVFDSATGRILLIPQGARLIGSYDSVVAFGQRRALLVWKRIILPDGASIQLDNLPAT 320
#
# Query: 75 DAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVG 134
# D +G+AGL D VD+H L L+T+L VG + ESD+VRA+R S SQ G
# Sbjct: 321 DTEGHAGLADQVDFHTWRLLKGVVLSTLLGVGTKLSLGDGESDLVRAIRQSTQQSASQAG 380
#
# Query: 135 QQIVQRQLNIAPTLTIRPGVNVRVVVTRDLMLEPY 169
# QQIV +QL + PTL +RPG +R +V +DL+L P+
# Sbjct: 381 QQIVAKQLAVQPTLRVRPGWPLRAIVHKDLILRPW 415
#
#
# >AGpT71
# Length = 438
#
# Score = 124 bits (310), Expect = 1e-28
# Identities = 62/156 (39%), Positives = 98/156 (62%), Gaps = 5/156 (3%)
#
# Query: 15 MTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGT 74
# +++NVYDS TG LLIPQGT++ G+YD+ V FGQ RVL+VW+ ++FPNG ++ + GT
# Sbjct: 277 VSQNVYDSATGHLLLIPQGTKLFGRYDSKVSFGQSRVLVVWTDIIFPNGSTLQIGGMAGT 336
#
# Query: 75 DAQGYAGLEDGVDYHWGELFNAAALTTILSVG-----AEAGSSGQESDIVRALRGGASDS 129
# DAQGY+G D VD +W + F +A L ++ G E+ + + A R +++
# Sbjct: 337 DAQGYSGSRDKVDRNWLQTFGSAILIAVIGTGIDMAVPESSTLATQDTASDAARRNFAET 396
#
# Query: 130 LSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDLM 165
# +V + +QR +++ PTL IRPG V+V +D++
# Sbjct: 397 FGRVADRTIQRNMDVQPTLEIRPGYKFNVLVDQDIV 432
#
#
# >XFa0040
# Length = 469
#
# Score = 122 bits (306), Expect = 3e-28
# Identities = 62/166 (37%), Positives = 100/166 (59%), Gaps = 9/166 (5%)
#
# Query: 13 GVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQP 72
# G + ++VYD+ TG+ LLIPQGTR++G Y++ VG+GQ +L+ W RLVFP+G+++ + P
# Sbjct: 299 GQVAQDVYDTATGKYLLIPQGTRLVGMYNSNVGYGQGAILIAWQRLVFPDGKALDISAMP 358
#
# Query: 73 GTDAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQ 132
# G D GYAG D ++H+ +F +A L + ++ + + ++ + AS LSQ
# Sbjct: 359 GADNAGYAGFRDQANHHYTRIFGSALLMSGVTAASSYATDRNRNNSGIYSQPTASSELSQ 418
#
# Query: 133 --------VGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDL-MLEPY 169
# V Q++ + LNIAPTL IRPG +++ +DL +PY
# Sbjct: 419 ALGQQLGNVTAQMISKNLNIAPTLQIRPGYRFNIIIVKDLNFTKPY 464
#
#
# >XF2049
# Length = 466
#
# Score = 121 bits (303), Expect = 8e-28
# Identities = 62/166 (37%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
#
# Query: 13 GVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQP 72
# G + ++VYD+ TG+ LLIPQGTR++G Y++ VG+GQ +L+ W RLVFP+G+++ + P
# Sbjct: 296 GQVAQDVYDTATGKYLLIPQGTRLVGMYNSNVGYGQGAILIAWQRLVFPDGKALDISAMP 355
#
# Query: 73 GTDAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQ 132
# G D GYAG D ++H+ +F +A L + ++ + ++ + AS LSQ
# Sbjct: 356 GADNAGYAGFRDQANHHYTRIFGSALLMSGVTAASSYAMDRNRNNGGIYSQPTASSELSQ 415
#
# Query: 133 --------VGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDL-MLEPY 169
# V Q++ + LNIAPTL IRPG +++ +DL +PY
# Sbjct: 416 ALGQQLGNVTAQMISKNLNIAPTLQIRPGYRFNIIIVKDLNFTKPY 461
#
#
# >CC2422
# Length = 383
#
# Score = 89.0 bits (219), Expect = 5e-18
# Identities = 51/140 (36%), Positives = 80/140 (56%), Gaps = 1/140 (0%)
#
# Query: 25 GRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYAGLED 84
# G ++LIP+G+++IGQY +GV GQ R +VWSR++ P G SI + PG D G GL+
# Sbjct: 235 GSTVLIPRGSKLIGQYKSGVAAGQTRAFIVWSRVLTPQGVSIDIA-SPGADRLGRGGLDG 293
#
# Query: 85 GVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVGQQIVQRQLNI 144
# + H+ F A+ L ++L+ G A S+ A+ G+ S + +QR+++I
# Sbjct: 294 ETNTHFFRRFGASILLSVLNAGLNAASNNGNGGDNTAIIIGSPQQASNIASIALQREIDI 353
#
# Query: 145 APTLTIRPGVNVRVVVTRDL 164
# T+T+ G +RV V RDL
# Sbjct: 354 PTTITVAQGAPIRVFVARDL 373
#
#
# >XFa0014
# Length = 447
#
# Score = 80.9 bits (198), Expect = 1e-15
# Identities = 50/153 (32%), Positives = 92/153 (59%), Gaps = 9/153 (5%)
#
# Query: 15 MTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGT 74
# +T +VY S G+ LL+ +G++++G+Y G+ GQ R+ ++W+R+ PNG IV PGT
# Sbjct: 289 LTSDVY-SDNGQVLLLDRGSQLVGEYQGGMKQGQVRLFVLWTRVKTPNG-VIVSLNSPGT 346
#
# Query: 75 DAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEA---GSSGQESDIVRALRGGASDSLS 131
# DA G +GL+ VD H+ + F AA L +++ + ++G +++ GG +
# Sbjct: 347 DALGRSGLDGWVDNHFSQRFGAAILMSLVQDSVKELLRNNNGGTTNVY----GGTINGGE 402
#
# Query: 132 QVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDL 164
# ++ ++I++ +NI PT+ G +++V+V RDL
# Sbjct: 403 KIIEKILESTVNIPPTIVKNQGDHIQVMVARDL 435
#
#
# >AGpA231
# Length = 390
#
# Score = 80.9 bits (198), Expect = 1e-15
# Identities = 52/143 (36%), Positives = 76/143 (52%), Gaps = 3/143 (2%)
#
# Query: 22 SPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYAG 81
# S GR +L+ +GT+V+G+Y G+ GQ R+ ++W+R P G IV P TDA G AG
# Sbjct: 216 SDNGRVVLMEKGTQVVGEYRGGLQRGQERLFILWNRAKTPKG-VIVTLASPATDALGRAG 274
#
# Query: 82 LEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVGQQIVQRQ 141
# ++ VD HW E F +A L +I+ SS + V A + + + Q V++
# Sbjct: 275 VDGHVDTHWWERFGSALLLSIVGDATNYASSRLQDSDVDAQK--TTSASQQAAAIAVEQS 332
#
# Query: 142 LNIAPTLTIRPGVNVRVVVTRDL 164
# +NI PTL G V + V RDL
# Sbjct: 333 INIPPTLNKHQGEPVSIFVARDL 355
#
#
# >SMa1303
# Length = 390
#
# Score = 79.0 bits (193), Expect = 5e-15
# Identities = 54/144 (37%), Positives = 78/144 (53%), Gaps = 5/144 (3%)
#
# Query: 22 SPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYAG 81
# S GR +L+ +GT+V+G+Y G+ GQ+R+ ++W R PNG IV P TDA G AG
# Sbjct: 216 SDNGRVVLMEKGTQVVGEYRGGLQRGQKRLFVLWYRAKTPNG-VIVTLASPATDALGRAG 274
#
# Query: 82 LEDGVDYHWGELFNAAALTTILSVGAEAGSSG-QESDIVRALRGGASDSLSQVGQQIVQR 140
# ++ VD HW E F +A L +I+ SS Q+SD+ + + Q V++
# Sbjct: 275 VDGYVDTHWWERFGSALLLSIVGDATSYASSRLQDSDVDAQ---NTTSAGQQAAAVAVEQ 331
#
# Query: 141 QLNIAPTLTIRPGVNVRVVVTRDL 164
# +NI PTL G V + V RDL
# Sbjct: 332 SINIPPTLNKHQGELVSIFVARDL 355
#
#
# >mlr9259
# Length = 410
#
# Score = 76.6 bits (187), Expect = 2e-14
# Identities = 59/188 (31%), Positives = 100/188 (52%), Gaps = 32/188 (17%)
#
# Query: 7 IVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSI 66
# + + + V++E+V+ S GR +LIP G+R+IG+Y +G+ GQ RV +VW+RL+ +G S+
# Sbjct: 196 LAGMVRAVVSEDVW-SFDGRRVLIPGGSRLIGEYRSGLATGQTRVFIVWTRLLRSDGMSV 254
#
# Query: 67 VLERQPGTDAQGYAGLEDGVDYHWGELFNAAALTTIL--------SVGAEAGSSG----- 113
# L GTD G +G+ VD H+ E F +A L +++ ++G + S
# Sbjct: 255 QLG-STGTDELGRSGMPGEVDNHYFERFGSAILLSVVGGATQFIANLGTDQNGSNTNQTY 313
#
# Query: 114 -------------QESDIVRALRG-GA---SDSLSQVGQQIVQRQLNIAPTLTIRPGVNV 156
# Q + V+ R GA S SL+++ ++ ++ +NIAPT+ + G +
# Sbjct: 314 TDPQTGQTVTIQTQPNQYVQNARQIGAQQVSQSLNRIAEEALRNSINIAPTIHVDQGSRI 373
#
# Query: 157 RVVVTRDL 164
# V V RDL
# Sbjct: 374 MVFVRRDL 381
#
#
# >BMEII0034
# Length = 265
#
# Score = 74.3 bits (181), Expect = 1e-13
# Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
#
# Query: 14 VMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPG 73
# V+T N+Y S G+ LLI +G+ + G+YD V G R+ ++W+R+ PNG I L+ PG
# Sbjct: 104 VVTRNMY-SDNGKVLLIERGSTISGEYDANVKQGMARIYVLWTRVKTPNGVVIDLD-SPG 161
#
# Query: 74 TDAQGYAGLEDGVDYH-WGELFNAAALTTILSVG--AEAGSSGQESDIVRALRGGASDSL 130
# D G AGL +D H W A L+TI ++G A G S+ + L G +S
# Sbjct: 162 ADPLGGAGLPGYIDSHFWKRFGGALMLSTIETLGRYATQKVGGGGSNQIN-LNTGGGEST 220
#
# Query: 131 SQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDL 164
# S + ++ +NI PTL G + + + RDL
# Sbjct: 221 SNLASTALKDTINIPPTLYKNQGEEIGIYIARDL 254
#
#
# >jhp0036
# Length = 376
#
# Score = 67.0 bits (162), Expect = 2e-11
# Identities = 44/154 (28%), Positives = 77/154 (49%), Gaps = 14/154 (9%)
#
# Query: 25 GRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYAGLED 84
# G+++LIP+G++VIG Y N G+ R+ +VWSR++ P+G +I+L G D +GY GL
# Sbjct: 207 GKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRIITPHGINIMLTNAKGADIKGYNGLVG 266
#
# Query: 85 GVDYHWGELFNAAALTTILSVGAEAG------SSGQESDIVR--------ALRGGASDSL 130
# + + + L + L+ G G + G + ++ L + +
# Sbjct: 267 ELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMRQSGMGI 326
#
# Query: 131 SQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDL 164
# +QV QI++ + IAP + IR G V + D+
# Sbjct: 327 NQVVNQILRDKSKIAPIVVIREGSRVFISPNTDI 360
#
#
# >HP0042
# Length = 233
#
# Score = 66.2 bits (160), Expect = 3e-11
# Identities = 45/156 (28%), Positives = 79/156 (49%), Gaps = 18/156 (11%)
#
# Query: 25 GRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYAGLED 84
# G+++LIP+G++VIG Y N G+ R+ +VWSR++ P+G +I+L G D +GY GL
# Sbjct: 64 GKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRIITPHGINIMLTNAKGADIKGYNGLVG 123
#
# Query: 85 GVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASD---------------- 128
# + + + L + L+ G G + ++ R + GA++
# Sbjct: 124 ELIERNFQRYGVPLLLSTLTNGLLIGITSALNN--RGNKEGATNFFGDYLLMQLMRQSGM 181
#
# Query: 129 SLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDL 164
# ++QV QI++ + IAP + IR G V + D+
# Sbjct: 182 GINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDI 217
#
#
# >AGpT13
# Length = 377
#
# Score = 59.3 bits (142), Expect = 4e-09
# Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
#
# Query: 24 TGRSLLIPQGTRVIGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYAGLE 83
# T +L+ +GT V+G+ G+ G RV ++W R P+ I L P D G +GL
# Sbjct: 216 TNNVVLLDRGTTVVGEIQRGLQQGDARVFVLWDRAETPDHAMISLA-SPSADELGRSGLP 274
#
# Query: 84 DGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVGQQIVQRQLN 143
# VD H+ + F+ A L +++ +A S+ S ++ Q ++ +N
# Sbjct: 275 GTVDNHFWQRFSGAMLLSVVQGAFQAASTYAGSSGGGTSFNSVQNNGEQTADTALKATIN 334
#
# Query: 144 IAPTLTIRPGVNVRVVVTRDL 164
# I PTL G V + V RDL
# Sbjct: 335 IPPTLKKNQGDTVSIFVARDL 355
#
#
# >RP291
# Length = 483
#
# Score = 48.9 bits (115), Expect = 5e-06
# Identities = 28/96 (29%), Positives = 51/96 (52%), Gaps = 3/96 (3%)
#
# Query: 12 KGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQR-RVLLVWSRLVFPNGRSIVLER 70
# + +++ +V+ S G+ +LIP+G+++ G+Y RV ++W R+ NG +I +
# Sbjct: 216 RAIISRDVF-SEKGKVILIPKGSKIFGKYATSTSSDSYGRVSIIWDRVDLTNGYTIEFD- 273
#
# Query: 71 QPGTDAQGYAGLEDGVDYHWGELFNAAALTTILSVG 106
# P D G GL+ VD + E F A L + ++G
# Sbjct: 274 SPAVDNLGRPGLQGRVDNKYKEQFANAVLQSGFNIG 309
#
#
# >jhp0476_2
# Length = 273
#
# Score = 46.6 bits (109), Expect = 3e-05
# Identities = 39/179 (21%), Positives = 85/179 (46%), Gaps = 20/179 (11%)
#
# Query: 5 AYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFG--QRRVLLVWSRLVFPN 62
# A + + GV+ ++V++ G +L+ +GT+V G Y + G R+++V+++ + P+
# Sbjct: 54 ATLTGIVSGVVAKDVWNM-NGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPD 112
#
# Query: 63 GRSIVLERQPGTDAQGYAGLEDGVDYHWGELFNAAALTTILS--------------VGAE 108
# G I L G AG++ V+ H+ + A + ++++ +G
# Sbjct: 113 GVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLG 172
#
# Query: 109 AGSSGQESDIVRALR---GGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDL 164
# G S + + AL G+ S +Q+ QI+ + +NI P+ G +++++ D+
# Sbjct: 173 KGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDI 231
#
#
# >HP0527_2
# Length = 273
#
# Score = 46.2 bits (108), Expect = 3e-05
# Identities = 39/179 (21%), Positives = 85/179 (46%), Gaps = 20/179 (11%)
#
# Query: 5 AYIVAVFKGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFG--QRRVLLVWSRLVFPN 62
# A + + GV+ ++V++ G +L+ +GT+V G Y + G R+++V+++ + P+
# Sbjct: 54 ATLTGIVSGVVAKDVWNM-NGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPD 112
#
# Query: 63 GRSIVLERQPGTDAQGYAGLEDGVDYHWGELFNAAALTTILS--------------VGAE 108
# G I L G AG++ V+ H+ + A + ++++ +G
# Sbjct: 113 GVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLG 172
#
# Query: 109 AGSSGQESDIVRALR---GGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVTRDL 164
# G S + + AL G+ S +Q+ QI+ + +NI P+ G +++++ D+
# Sbjct: 173 KGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDI 231
#
#
# >RC0389
# Length = 482
#
# Score = 44.3 bits (103), Expect = 1e-04
# Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
#
# Query: 12 KGVMTENVYDSPTGRSLLIPQGTRVIGQYDNGVGFGQR-RVLLVWSRLVFPNGRSIVLER 70
# + +++ +V+ S + +LIP+G+++ G+Y RV ++W R+ +G +I +
# Sbjct: 215 RAIISRDVF-SEKDKVILIPKGSKIFGKYATSTSSDSYGRVSIIWDRIDLTSGYTIEFD- 272
#
# Query: 71 QPGTDAQGYAGLEDGVDYHWGELFNAAALTTILSVG 106
# P D G GL+ VD + E F A L + ++G
# Sbjct: 273 SPAVDNLGRPGLQGRVDNKYKEQFANAVLQSGFNIG 308
#
#
# >SPBC428.11
# Length = 429
#
# Score = 32.7 bits (73), Expect = 0.39
# Identities = 29/102 (28%), Positives = 45/102 (43%), Gaps = 10/102 (9%)
#
# Query: 68 LERQPGTDAQGYAGLEDGVDYHWGELFNAAALTTILSVGAEAGSSGQESDIVRALRGGAS 127
# LE+ P + Y GLE V + + + +LS GA+ G Q +V AL+ +
# Sbjct: 311 LEKHPKVNWVSYPGLESHVSHKLAKKYLKNGYGAVLSFGAKGGPD-QSRKVVNALK--LA 367
#
# Query: 128 DSLSQVGQQIVQRQLNIAPTLTIRPGV----NVRVVVTRDLM 165
# L+ VG + L IAP T + + VT+DL+
# Sbjct: 368 SQLANVGD---AKTLVIAPAYTTHLQLTDEEQISAGVTKDLI 406
#
#
# >PA1443
# Length = 323
#
# Score = 30.4 bits (67), Expect = 2.0
# Identities = 17/69 (24%), Positives = 34/69 (48%)
#
# Query: 102 ILSVGAEAGSSGQESDIVRALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVNVRVVVT 161
# +L G ++ Q+ ++ALR D +G +V+RQL + L ++PG + V +
# Sbjct: 228 MLDAGFQSDHDDQDERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMP 287
#
# Query: 162 RDLMLEPYG 170
# +++ G
# Sbjct: 288 EHMVMRANG 296
#
#
# >Cgl1293
# Length = 567
#
# Score = 29.6 bits (65), Expect = 3.1
# Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
#
# Query: 91 GELFNAAALTTILSVGAEAGSSGQE----SDIVRALRGGASDSLSQVGQQIVQRQLNIAP 146
# GEL + A +T L+VG+ G+ G S ++RA+ A+D + + +Q L+IA
# Sbjct: 96 GELGDVARITEALAVGSVRGARGNSGVVLSQVLRAIAQAAADGV--IDGHTIQEALSIAR 153
#
# Query: 147 TLTIR 151
# +L R
# Sbjct: 154 SLVDR 158
#
#
# >NMB0261
# Length = 259
#
# Score = 29.6 bits (65), Expect = 3.7
# Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
#
# Query: 96 AAALTTILSVGAEAGSSGQESDIVRALRGGASDSLSQVGQQIVQRQLNIAPTLTIRPGVN 155
# AA +LSV A+AG S R + GG + L+ VG+Q+VQ L +L + G
# Sbjct: 98 AARQLAMLSVLAKAGGS-------RGMAGGQAIDLANVGKQMVQADLEQMHSL--KTGAL 148
#
# Query: 156 VRVVV 160
# +R V
# Sbjct: 149 IRAAV 153
#
#
# >BH0295
# Length = 195
#
# Score = 29.3 bits (64), Expect = 3.8
# Identities = 12/30 (40%), Positives = 20/30 (66%)
#
# Query: 21 DSPTGRSLLIPQGTRVIGQYDNGVGFGQRR 50
# ++P G+ L+ +G +VI Y NG G G+R+
# Sbjct: 165 NTPHGQVRLVIKGGKVITMYPNGWGLGERK 194
#
#
# >all3984
# Length = 231
#
# Score = 28.9 bits (63), Expect = 6.0
# Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 15/61 (24%)
#
# Query: 15 MTENVYDSPTGRSLLIPQGTRVIGQ----YDNGVGFGQRR--------VLLVWSRLVFPN 62
# + N+ D+ R++LIP GT V+GQ Y NG F Q R V V L+FP+
# Sbjct: 76 IANNIIDN--NRNVLIPAGTEVVGQLEPVYFNG-NFSQDRNDQSNVRGVRFVARELIFPS 132
#
# Query: 63 G 63
# G
# Sbjct: 133 G 133
#
#
# >APE1819
# Length = 363
#
# Score = 28.1 bits (61), Expect = 8.9
# Identities = 21/66 (31%), Positives = 32/66 (47%), Gaps = 6/66 (9%)
#
# Query: 28 LLIPQGTRVIGQYDNGVGFGQRR---VLLVWSRLVFPNGRSIVLERQPGTDAQGYAGLED 84
# ++ P G RV+ ++ V + +RR + LV RL+ + VL R G YAGL+D
# Sbjct: 31 IMFPWGFRVV---ESRVDWEERRGWVLYLVRKRLLSTPTAASVLSRLLGCRLYSYAGLKD 87
#
# Query: 85 GVDYHW 90
# W
# Sbjct: 88 ACSVSW 93
#
#
# >sll0436
# Length = 151
#
# Score = 28.1 bits (61), Expect = 9.5
# Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
#
# Query: 37 IGQYDNGVGFGQRRVLLVWSRLVFPNGRSIVLERQPGTDAQGYAGLEDGVD 87
# IGQ+ +G R + + L+ P+ +S+V+ER PG + G G D
# Sbjct: 39 IGQWSTAIGGRSRFTIQI--PLLKPSLKSVVVERSPGLVVWQFKGFFQGQD 87
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.319 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,695,336
Number of Sequences: 192987
Number of extensions: 811500
Number of successful extensions: 2040
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2000
Number of HSP's gapped (non-prelim): 39
length of query: 171
length of database: 59,019,183
effective HSP length: 102
effective length of query: 69
effective length of database: 39,334,509
effective search space: 2714081121
effective search space used: 2714081121
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)