Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 2 |
| Arg | 4 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 3 |
| Gly | 4 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 1 |
| Met | 4 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| SeC | 2 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 1 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | GGC | Contig51 | 1 | 77123..77048 | 0..0 | 86.25 | 67.78 |
| Ala | TGC | Contig63 | 2 | 191195..191270 | 0..0 | 91.86 | 79.73 |
| Arg | ACG | Contig66 | 3 | 251061..250985 | 0..0 | 86.94 | 66.57 |
| Arg | CCG | Contig63 | 3 | 104421..104345 | 0..0 | 86.70 | 62.64 |
| Arg | CCT | Contig54 | 1 | 122610..122534 | 0..0 | 87.44 | 64.49 |
| Arg | TCT | Contig47 | 5 | 6545 ..6469 | 0..0 | 92.73 | 72.19 |
| Asn | GTT | Contig66 | 6 | 114771..114696 | 0..0 | 88.42 | 57.79 |
| Asp | GTC | Contig20 | 3 | 211 ..287 | 0..0 | 86.30 | 69.13 |
| Cys | GCA | Contig61 | 2 | 243119..243046 | 0..0 | 74.29 | 43.77 |
| Gln | CTG | Contig61 | 1 | 141573..141647 | 0..0 | 73.71 | 47.74 |
| Gln | TTG | Contig47 | 3 | 64690 ..64616 | 0..0 | 74.71 | 48.16 |
| Glu | TTC | Contig60 | 1 | 128894..128817 | 0..0 | 64.08 | 41.66 |
| Glu | TTC | Contig65 | 2 | 46906 ..46983 | 0..0 | 62.87 | 37.79 |
| Glu | TTC | Contig65 | 3 | 90615 ..90692 | 0..0 | 62.87 | 37.79 |
| Gly | CCC | Contig54 | 3 | 37494 ..37420 | 0..0 | 89.65 | 65.95 |
| Gly | GCC | Contig53 | 1 | 16258..16332 | 0..0 | 80.58 | 52.15 |
| Gly | GCC | Contig61 | 3 | 232482..232408 | 0..0 | 80.58 | 52.15 |
| Gly | TCC | Contig52 | 4 | 13399 ..13323 | 0..0 | 96.94 | 81.20 |
| His | GTG | Contig47 | 6 | 6402 ..6327 | 0..0 | 84.73 | 65.18 |
| Ile | GAT | Contig63 | 1 | 191109..191185 | 0..0 | 97.35 | 77.99 |
| Leu | CAA | Contig57 | 1 | 137735..137650 | 0..0 | 75.43 | 49.24 |
| Leu | CAG | Contig50 | 1 | 109670..109757 | 0..0 | 70.92 | 38.63 |
| Leu | GAG | Contig57 | 3 | 31126 ..31040 | 0..0 | 63.61 | 32.96 |
| Leu | TAA | Contig61 | 4 | 65301 ..65215 | 0..0 | 77.11 | 42.40 |
| Leu | TAG | Contig47 | 7 | 6160 ..6078 | 0..0 | 72.06 | 43.18 |
| Lys | TTT | Contig65 | 1 | 46817 ..46892 | 0..0 | 91.34 | 73.52 |
| Met | CAT | Contig47 | 1 | 84780 ..84704 | 0..0 | 89.79 | 64.50 |
| Met | CAT | Contig47 | 2 | 84672 ..84596 | 0..0 | 78.58 | 57.89 |
| Met | CAT | Contig58 | 1 | 26201 ..26277 | 0..0 | 89.41 | 67.71 |
| Met | CAT | Contig64 | 1 | 94220 ..94144 | 0..0 | 89.79 | 64.50 |
| Phe | GAA | Contig49 | 1 | 73311..73236 | 0..0 | 89.29 | 62.79 |
| Pro | CGG | Contig65 | 4 | 28955 ..28879 | 0..0 | 87.71 | 67.14 |
| Pro | GGG | Contig27 | 1 | 11772..11696 | 0..0 | 84.24 | 62.14 |
| Pro | TGG | Contig47 | 4 | 6631 ..6555 | 0..0 | 92.75 | 74.81 |
| SeC | TCA | Contig52 | 1 | 23423 ..23520 | 0..0 | 29.77 | 0.00 |
| SeC | TCA | Contig57 | 2 | 116553..116458 | 0..0 | 20.38 | 0.00 |
| Ser | CGA | Contig66 | 4 | 147265..147178 | 0..0 | 65.85 | 30.70 |
| Ser | GCT | Contig66 | 2 | 251378..251289 | 0..0 | 72.06 | 42.06 |
| Ser | GGA | Contig66 | 5 | 123455..123368 | 0..0 | 65.22 | 34.48 |
| Ser | TGA | Contig66 | 1 | 251682..251597 | 0..0 | 74.61 | 47.96 |
| Thr | CGT | Contig25 | 1 | 9924 ..9999 | 0..0 | 92.28 | 67.34 |
| Thr | GGT | Contig52 | 5 | 13299 ..13224 | 0..0 | 92.13 | 68.35 |
| Thr | TGT | Contig52 | 2 | 13702 ..13627 | 0..0 | 86.56 | 67.26 |
| Trp | CCA | Contig52 | 6 | 11700 ..11624 | 0..0 | 78.13 | 56.54 |
| Tyr | GTA | Contig52 | 3 | 13588 ..13504 | 0..0 | 71.90 | 41.86 |
| Undet | ??? | Contig20 | 1 | 33 ..107 | 0..0 | 75.28 | 58.08 |
| Val | GAC | Contig27 | 2 | 143 ..68 | 0..0 | 69.93 | 47.95 |
| Val | TAC | Contig20 | 2 | 129 ..204 | 0..0 | 93.79 | 71.26 |
| Val | TAC | Contig54 | 2 | 101027..100952 | 0..0 | 93.79 | 71.26 |
tRNA Models
Contig20.trna1 (33-107) Length: 75 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 75.28
HMM Sc=58.08 Sec struct Sc=17.20
* | * | * | * | * | * | * |
Seq: GGGGCTGTAGTAGAGTCGGTTACACGCCGGCCTGTACGCCGGAGGtCGCGGGTTCGAGTCCCGTCAGCCCCGCCA
Str: >>>>>>>..>>............<<.>>>>>......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig20.trna2 (129-204) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (162-164) Score: 93.79
HMM Sc=71.26 Sec struct Sc=22.53
* | * | * | * | * | * | * | *
Seq: GGGCGAATAGCTCAGCTGGGAGAGCATCGGTCTTACACACCGAGGGtCACAGGTTCGAGCCCTGTTTCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig20.trna3 (211-287) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (245-247) Score: 86.30
HMM Sc=69.13 Sec struct Sc=17.17
* | * | * | * | * | * | * | *
Seq: GGGGCTGTAGTAGAGTCGGTtACAACGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGTCCCGTCAGCCCCGCCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig25.trna1 (9924-9999) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (9957-9959) Score: 92.28
HMM Sc=67.34 Sec struct Sc=24.94
* | * | * | * | * | * | * | *
Seq: GCCGTTATAGCTCAGTTGGTAGAGCAACGCACTCGTAATGCGTAGGtCGCTGGTTCGACTCCAGTTAACGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig27.trna1 (11772-11696) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (11738-11736) Score: 84.24
HMM Sc=62.14 Sec struct Sc=22.10
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCACATGCATGGGGTGCATGGGGtCGGAGGTTCAAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig27.trna2 (143-68) Length: 76 bp
Type: Val Anticodon: GAC at 33-35 (111-109) Score: 69.93
HMM Sc=47.95 Sec struct Sc=21.98
* | * | * | * | * | * | * | *
Seq: AGGCACGTAGCTCAGTGGGAGAGCACCACCTTGACACGGTGGGGGtCGGCGGTTCCATCCCGCCcCGTGCCTACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<<<<....
Contig47.trna1 (84780-84704) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (84746-84744) Score: 89.79
HMM Sc=64.50 Sec struct Sc=25.29
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTTtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGGAGGTTCAAATCCTTCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig47.trna2 (84672-84596) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (84638-84636) Score: 78.58
HMM Sc=57.89 Sec struct Sc=20.69
* | * | * | * | * | * | * | *
Seq: GGCGGTGTAGCTCAGTTGGTtAGAGCATGCGGCTCATATCCGCAGTGtCCGGAGTTCGAATCTCAGCACCGACACCA
Str: >.>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<.<....
Contig47.trna3 (64690-64616) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (64658-64656) Score: 74.71
HMM Sc=48.16 Sec struct Sc=26.55
* | * | * | * | * | * | * |
Seq: TGGGGCGTCGCCAAGCGGTAAGGCACCGGATTTTGATTCCGGCATtCCCAGGTTCGATCCCTGGCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig47.trna4 (6631-6555) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (6597-6595) Score: 92.75
HMM Sc=74.81 Sec struct Sc=17.94
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCGCAGCCtGGTAGCGCACCTGCCTTGGGAGCAGGGGGtCGGAGGTTCGAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig47.trna5 (6545-6469) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (6511-6509) Score: 92.73
HMM Sc=72.19 Sec struct Sc=20.54
* | * | * | * | * | * | * | *
Seq: GCGCCAGTAGCTCAGCTGGAtAGAGCATGTGACTTCTAATCACAGGGtCGAGGGTTCGAGTCCTTCCTGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig47.trna6 (6402-6327) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (6369-6367) Score: 84.73
HMM Sc=65.18 Sec struct Sc=19.55
* | * | * | * | * | * | * | *
Seq: GTGGGTGTAGCTCAGTTGGTAGAGCGCTGGATTGTGACTCCAGTTGtCGAGGGTTCAAATCCCTTCACTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig47.trna7 (6160-6078) Length: 83 bp
Type: Leu Anticodon: TAG at 35-37 (6126-6124) Score: 72.06
HMM Sc=43.18 Sec struct Sc=28.88
* | * | * | * | * | * | * | * |
Seq: GCGAGAGTGGCGGAATTGGCaGACGCACTGGATTTAGGATCCAGCGGGCAACCGTGGGAGTTCGAGTCTCCCCTCTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>....<<..>>>>>.......<<<<<<<<<<<<....
Contig49.trna1 (73311-73236) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (73278-73276) Score: 89.29
HMM Sc=62.79 Sec struct Sc=26.50
* | * | * | * | * | * | * | *
Seq: GCCCAGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCGGCAGTTCGATTCTGTCTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig50.trna1 (109670-109757) Length: 88 bp
Type: Leu Anticodon: CAG at 36-38 (109705-109707) Score: 70.92
HMM Sc=38.63 Sec struct Sc=32.29
* | * | * | * | * | * | * | * | *
Seq: GCCGAAGTGGTGGAATCtGGTaGACACGCATGATTCAGGTTCATGTGCTCGTTAGGGCGTGGGAGTTCGAGTCTCCCCTTCGGCACCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig51.trna1 (77123-77048) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (77090-77088) Score: 86.25
HMM Sc=67.78 Sec struct Sc=18.47
* | * | * | * | * | * | * | *
Seq: GGGGCTATAGCTCAGCTGGGAGAGCGCTTGAATGGCATTCAAGAGGtCAGCGGTTCGATCCCGCTTAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna1 (23423-23520) Length: 98 bp
Type: SeC Anticodon: TCA at 38-40 (23460-23462) Score: 29.77
HMM Sc=0.00 Sec struct Sc=0.00
* | * | * | * | * | * | * | * | * | *
Seq: GGGGGAGTAGCtaGTAGCCtGGTGGCGCtcACGGCCTTCAAAGCCGATGGGGGGCGTATCcCGTCCCCGGTGGGTTCGATTCCCATCTgCTCCCGCCA
Str: >>>>>>>..>>..>>.........<<<<...>>>>.......<<<<...>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<.<<<<<....
Contig52.trna2 (13702-13627) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (13669-13667) Score: 86.56
HMM Sc=67.26 Sec struct Sc=19.30
* | * | * | * | * | * | * | *
Seq: GCTGGCGTAGCTCAATCGGTAGAGCACCTCACTTGTAATGAGGATGtTGTGGGTTCAATTCCTATCGCCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna3 (13588-13504) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (13554-13552) Score: 71.90
HMM Sc=41.86 Sec struct Sc=30.04
* | * | * | * | * | * | * | * |
Seq: GGAGGGGTTCCCGAGTGGCcaAAGGGAGCAGACTGTAAATCTGCCGTCTAAGACTtCGGAGGTTCGAATCCTCCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
Contig52.trna4 (13399-13323) Length: 77 bp
Type: Gly Anticodon: TCC at 35-37 (13365-13363) Score: 96.94
HMM Sc=81.20 Sec struct Sc=15.74
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGCtAGAGCATCAGCCTTCCAAGCTGAGGGtCGCGGGTTCGAGTCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna5 (13299-13224) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (13266-13264) Score: 92.13
HMM Sc=68.35 Sec struct Sc=23.78
* | * | * | * | * | * | * | *
Seq: GCCCACATAGCTCAGCAGGTAGAGCACTTCCTTGGTAAGGAAGAGGtCACCGGTTCAAGTCCGGTTGTGGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna6 (11700-11624) Length: 77 bp
Type: Trp Anticodon: CCA at 35-37 (11666-11664) Score: 78.13
HMM Sc=56.54 Sec struct Sc=21.59
* | * | * | * | * | * | * | *
Seq: AGGCCAGTAGCTCTAATGGCtAGAGCACCGGTCTCCAAAACCGGGTGtTGGGGGTTCGAATCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig53.trna1 (16258-16332) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (16290-16292) Score: 80.58
HMM Sc=52.15 Sec struct Sc=28.43
* | * | * | * | * | * | * |
Seq: GCGGGAATAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGACGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig54.trna1 (122610-122534) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (122576-122574) Score: 87.44
HMM Sc=64.49 Sec struct Sc=22.95
* | * | * | * | * | * | * | *
Seq: GGCCCCGTAGCTCAGCTGGAtAGAGCGATCGCCTCCTAAGCGATAGGcCACTGGTTCGACTCCAGTCGGGGCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig54.trna2 (101027-100952) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (100994-100992) Score: 93.79
HMM Sc=71.26 Sec struct Sc=22.53
* | * | * | * | * | * | * | *
Seq: GGGCGAATAGCTCAGCTGGGAGAGCATCGGTCTTACACACCGAGGGtCACAGGTTCGAGCCCTGTTTCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig54.trna3 (37494-37420) Length: 75 bp
Type: Gly Anticodon: CCC at 33-35 (37462-37460) Score: 89.65
HMM Sc=65.95 Sec struct Sc=23.70
* | * | * | * | * | * | * |
Seq: GCGGGAATAACTCAGTGGTAGAGTGTCAGCTTCCCAAGCTGAAGGtCGCGGGTTCGAATCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig57.trna1 (137735-137650) Length: 86 bp
Type: Leu Anticodon: CAA at 35-37 (137701-137699) Score: 75.43
HMM Sc=49.24 Sec struct Sc=26.19
* | * | * | * | * | * | * | * | *
Seq: GCCGAAGTGGTGGAATTGGTaGACACGTCGGTCTCAAAAACCGATGGCTTCTGGCCGTGCCGGTTCGATTCCGGCCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>.>>..<<.<..>>>>>.......<<<<<<<<<<<<....
Contig57.trna2 (116553-116458) Length: 96 bp
Type: SeC Anticodon: TCA at 36-38 (116518-116516) Score: 20.38
HMM Sc=0.00 Sec struct Sc=0.00
* | * | * | * | * | * | * | * | * | *
Seq: GGGAGTAgcTAGTAACCtGGTGGCGcTCACGGCCTTCAAAGCCGATGGGGGGTGCATCcCATCCCCGGTGGGTTCGATTCCCATcTACTCCCGCCA
Str: >>>>>>>....>>.........<<.....>>>>.......<<<<...>>>>>>>.....<<<<<<<.>>>>>.......<<<<<.<<<<<<<....
Contig57.trna3 (31126-31040) Length: 87 bp
Type: Leu Anticodon: GAG at 35-37 (31092-31090) Score: 63.61
HMM Sc=32.96 Sec struct Sc=30.65
* | * | * | * | * | * | * | * | *
Seq: GCCGAAGTGGTGGAACTGGTaGACACGCCATCTTGAGGGGGTGGTGGCCAATTGGTCGTGCGAGTTCGAGTCTCGCCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>><<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig58.trna1 (26201-26277) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (26235-26237) Score: 89.41
HMM Sc=67.71 Sec struct Sc=21.70
* | * | * | * | * | * | * | *
Seq: GGGCCTATAGCTCAGTTGGTcAGAGCCACCGGCTCATAACCGGTTTGtCCCAGGTTCGAGTCCTGGTGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig60.trna1 (128894-128817) Length: 78 bp
Type: Glu Anticodon: TTC at 37-39 (128858-128856) Score: 64.08
HMM Sc=41.66 Sec struct Sc=22.42
* | * | * | * | * | * | * | *
Seq: GCGCTCATCGTCTAGCCtGGTccAGGACACCGCCCTTTCACGGCGGCGACAGGGGTTCGAATCCCCTTGGGCGTACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig61.trna1 (141573-141647) Length: 75 bp
Type: Gln Anticodon: CTG at 33-35 (141605-141607) Score: 73.71
HMM Sc=47.74 Sec struct Sc=25.97
* | * | * | * | * | * | * |
Seq: TGGGGTGTCGCCAAGCGGTAAGGCAACGGACTCTGACTCCGTCATgCGTAGGTTCGAATCCTACCACCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig61.trna2 (243119-243046) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (243087-243085) Score: 74.29
HMM Sc=43.77 Sec struct Sc=30.52
* | * | * | * | * | * | * |
Seq: GGCCCCGTCGCCAAGTGGTAAGGCAGAGGCCTGCAAAGCCTTTAtCCCCAGTTCGAATCTGGGCGGGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig61.trna3 (232482-232408) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (232450-232448) Score: 80.58
HMM Sc=52.15 Sec struct Sc=28.43
* | * | * | * | * | * | * |
Seq: GCGGGAATAACTCAGTGGTAGAGTGCAACCTTGCCAAGGTTGACGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig61.trna4 (65301-65215) Length: 87 bp
Type: Leu Anticodon: TAA at 35-37 (65267-65265) Score: 77.11
HMM Sc=42.40 Sec struct Sc=34.71
* | * | * | * | * | * | * | * | *
Seq: GCCCGGGTGGCGGAACTGGTaGACGCAAGGGACTTAAAATCCCTCGGTCGTAAGACTgTACGAGTTCGATTCTCGTCCCGGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig63.trna1 (191109-191185) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (191143-191145) Score: 97.35
HMM Sc=77.99 Sec struct Sc=19.36
* | * | * | * | * | * | * | *
Seq: GGGCTAGTAGCTCAGCTGGCtAGAGCACACGACTGATAATCGTGAGGtCGGAGGTTCAAGTCCTCCCTGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig63.trna2 (191195-191270) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (191228-191230) Score: 91.86
HMM Sc=79.73 Sec struct Sc=12.13
* | * | * | * | * | * | * | *
Seq: GGGGGTGTAGCTCAGTTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCATCGGTTCGAACCCGTTCACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig63.trna3 (104421-104345) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (104387-104385) Score: 86.70
HMM Sc=62.64 Sec struct Sc=24.06
* | * | * | * | * | * | * | *
Seq: GCGCGATTAGCTCAGCTGGAtAGAGCGCTGCCCTCCGGAGGCAGAGGcCATAGGTTCGAATCCTATATCGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig64.trna1 (94220-94144) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (94186-94184) Score: 89.79
HMM Sc=64.50 Sec struct Sc=25.29
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTTtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGGAGGTTCAAATCCTTCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig65.trna1 (46817-46892) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (46850-46852) Score: 91.34
HMM Sc=73.52 Sec struct Sc=17.82
* | * | * | * | * | * | * | *
Seq: GAGCCGGTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGATGGtCGTGGGTTCGATCCCCCCCCGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig65.trna2 (46906-46983) Length: 78 bp
Type: Glu Anticodon: TTC at 37-39 (46942-46944) Score: 62.87
HMM Sc=37.79 Sec struct Sc=25.08
* | * | * | * | * | * | * | *
Seq: GTCCCTATCGTCTAGCCtGGCccAGGACACCGCCCTTTCACGGCGGCGACGGGGGTTCGAATCCCCCTGGGGACGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig65.trna3 (90615-90692) Length: 78 bp
Type: Glu Anticodon: TTC at 37-39 (90651-90653) Score: 62.87
HMM Sc=37.79 Sec struct Sc=25.08
* | * | * | * | * | * | * | *
Seq: GTCCCTATCGTCTAGCCtGGCccAGGACACCGCCCTTTCACGGCGGCGACGGGGGTTCGAATCCCCCTGGGGACGCCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig65.trna4 (28955-28879) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (28921-28919) Score: 87.71
HMM Sc=67.14 Sec struct Sc=20.57
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCACCTGCTTCGGGAGCAGGGGGcCGGAGGTTCAAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig66.trna1 (251682-251597) Length: 86 bp
Type: Ser Anticodon: TGA at 35-37 (251648-251646) Score: 74.61
HMM Sc=47.96 Sec struct Sc=26.65
* | * | * | * | * | * | * | * | *
Seq: GGAGGAGTGGCCGAGTGGCttAAGGCGGCGGTCTTGAAAACCGTTGTACGAAAGTACCGTGGGTTCAAATCCTACCTCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<.>>>>>.......<<<<<<<<<<<<....
Contig66.trna2 (251378-251289) Length: 90 bp
Type: Ser Anticodon: GCT at 35-37 (251344-251342) Score: 72.06
HMM Sc=42.06 Sec struct Sc=30.00
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCCGAGAGGCtgAAGGCGGCACCCTGCTAAGGTGTTATACGGGCAACTGTATCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig66.trna3 (251061-250985) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (251027-251025) Score: 86.94
HMM Sc=66.57 Sec struct Sc=20.37
* | * | * | * | * | * | * | *
Seq: GCGCCAGTAGCTCAGCTGGAtAGAGCGTCTGACTACGGATCAGAAGGtCGGGAGTTCGAATCTTCCCTGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig66.trna4 (147265-147178) Length: 88 bp
Type: Ser Anticodon: CGA at 35-37 (147231-147229) Score: 65.85
HMM Sc=30.70 Sec struct Sc=35.15
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGTCCGAGCGGCcgAAGGTGATTGACTCGAAATCAATTGTCCCGAAAGGGACCGGGAGTTCGAATCTCCCCCTCTCCGCCA
Str: >>>>>>>...>>...........<<..>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig66.trna5 (123455-123368) Length: 88 bp
Type: Ser Anticodon: GGA at 35-37 (123421-123419) Score: 65.22
HMM Sc=34.48 Sec struct Sc=30.74
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGACCGAGCGGTcgAAGGTGCTCGCCTGGAAAGCGGGTGTAGTGCAAGCTACCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig66.trna6 (114771-114696) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (114738-114736) Score: 88.42
HMM Sc=57.79 Sec struct Sc=30.63
* | * | * | * | * | * | * | *
Seq: TCCCCGATAGCTCAGTTGGTAGAGCAGGTGACTGTTAATCACCCTGtCGCAAGTTCGAGTCTTGCTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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