Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 6 |
| Arg | 4 |
| Asn | 1 |
| Asp | 2 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 4 |
| His | 1 |
| Ile | 4 |
| Leu | 5 |
| Lys | 1 |
| Met | 6 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 0 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig97 | 12 | 1355467..1355542 | 0..0 | 82.28 | 67.99 |
| Ala | GGC | Contig97 | 1 | 100952 ..101027 | 0..0 | 84.16 | 67.33 |
| Ala | TGC | Contig90 | 2 | 50910 ..50985 | 0..0 | 94.08 | 76.07 |
| Ala | TGC | Contig91 | 2 | 591336..591411 | 0..0 | 94.08 | 76.07 |
| Ala | TGC | Contig91 | 5 | 718312..718387 | 0..0 | 94.08 | 76.07 |
| Ala | TGC | Contig97 | 26 | 2865157..2865232 | 0..0 | 94.08 | 76.07 |
| Arg | ACG | Contig97 | 3 | 312778 ..312854 | 0..0 | 85.01 | 57.96 |
| Arg | CCG | Contig97 | 40 | 477544 ..477468 | 0..0 | 87.88 | 58.55 |
| Arg | CCT | Contig97 | 24 | 2622537..2622612 | 0..0 | 85.25 | 62.97 |
| Arg | TCT | Contig97 | 15 | 1441592..1441668 | 0..0 | 75.82 | 40.16 |
| Asn | GTT | Contig91 | 11 | 259222..259148 | 0..0 | 87.59 | 63.64 |
| Asp | GTC | Contig97 | 36 | 1914026..1913950 | 0..0 | 92.64 | 74.18 |
| Asp | GTC | Contig97 | 37 | 1913915..1913839 | 0..0 | 92.64 | 74.18 |
| Cys | GCA | Contig97 | 14 | 1403236..1403309 | 0..0 | 64.27 | 42.72 |
| Gln | TTG | Contig97 | 17 | 1552603..1552677 | 0..0 | 70.60 | 43.41 |
| Gln | TTG | Contig97 | 18 | 1552767..1552841 | 0..0 | 70.60 | 43.41 |
| Glu | TTC | Contig97 | 38 | 848994 ..848920 | 0..0 | 56.90 | 33.02 |
| Glu | TTC | Contig97 | 7 | 842089 ..842163 | 0..0 | 56.90 | 33.02 |
| Gly | CCC | Contig97 | 8 | 906177 ..906250 | 0..0 | 80.56 | 63.10 |
| Gly | GCC | Contig91 | 10 | 541902..541828 | 0..0 | 86.21 | 60.80 |
| Gly | GCC | Contig97 | 19 | 1764088..1764162 | 0..0 | 86.21 | 60.80 |
| Gly | TCC | Contig91 | 7 | 864311..864236 | 0..0 | 96.27 | 76.57 |
| His | GTG | Contig97 | 4 | 422206 ..422282 | 0..0 | 82.95 | 56.79 |
| Ile | GAT | Contig90 | 1 | 50747 ..50823 | 0..0 | 94.31 | 75.62 |
| Ile | GAT | Contig91 | 1 | 591173..591249 | 0..0 | 94.31 | 75.62 |
| Ile | GAT | Contig91 | 4 | 718149..718225 | 0..0 | 94.31 | 75.62 |
| Ile | GAT | Contig97 | 25 | 2864994..2865070 | 0..0 | 94.31 | 75.62 |
| Leu | CAA | Contig97 | 9 | 929780 ..929863 | 0..0 | 65.92 | 35.26 |
| Leu | CAG | Contig97 | 33 | 2820077..2819993 | 0..0 | 77.05 | 47.78 |
| Leu | GAG | Contig97 | 6 | 669210 ..669296 | 0..0 | 70.14 | 35.55 |
| Leu | TAA | Contig97 | 23 | 2112636..2112719 | 0..0 | 67.26 | 38.90 |
| Leu | TAG | Contig97 | 13 | 1383135..1383219 | 0..0 | 76.50 | 55.08 |
| Lys | TTT | Contig97 | 30 | 3044610..3044536 | 0..0 | 88.23 | 68.06 |
| Met | CAT | Contig90 | 3 | 54433 ..54509 | 0..0 | 81.76 | 54.87 |
| Met | CAT | Contig91 | 3 | 594859..594935 | 0..0 | 81.76 | 54.87 |
| Met | CAT | Contig91 | 6 | 721835..721911 | 0..0 | 81.76 | 54.87 |
| Met | CAT | Contig91 | 8 | 751621..751545 | 0..0 | 102.45 | 81.90 |
| Met | CAT | Contig97 | 27 | 2868682..2868758 | 0..0 | 81.76 | 54.87 |
| Met | CAT | Contig97 | 29 | 3137374..3137299 | 0..0 | 81.70 | 63.51 |
| Phe | GAA | Contig97 | 5 | 600425 ..600500 | 0..0 | 92.50 | 72.84 |
| Pro | CGG | Contig97 | 2 | 163765 ..163841 | 0..0 | 90.53 | 67.35 |
| Pro | GGG | Contig97 | 22 | 1959275..1959352 | 0..0 | 79.26 | 57.71 |
| Pro | TGG | Contig97 | 28 | 3069597..3069673 | 0..0 | 88.96 | 66.81 |
| Ser | CGA | Contig91 | 9 | 696998..696909 | 0..0 | 67.73 | 35.72 |
| Ser | GCT | Contig97 | 11 | 1305837..1305927 | 0..0 | 75.53 | 45.70 |
| Ser | GGA | Contig97 | 21 | 1850753..1850842 | 0..0 | 69.55 | 45.14 |
| Ser | TGA | Contig97 | 35 | 2166291..2166202 | 0..0 | 84.27 | 45.99 |
| Thr | CGT | Contig97 | 31 | 2968091..2968016 | 0..0 | 96.40 | 78.79 |
| Thr | GGT | Contig97 | 39 | 591774 ..591700 | 0..0 | 90.21 | 63.62 |
| Thr | TGT | Contig97 | 16 | 1512266..1512340 | 0..0 | 83.61 | 64.38 |
| Trp | CCA | Contig97 | 34 | 2591359..2591284 | 0..0 | 92.43 | 72.38 |
| Val | CAC | Contig97 | 10 | 1089809..1089883 | 0..0 | 88.03 | 65.53 |
| Val | GAC | Contig97 | 32 | 2851733..2851659 | 0..0 | 88.52 | 63.45 |
| Val | TAC | Contig97 | 20 | 1770068..1770143 | 0..0 | 88.72 | 70.72 |
tRNA Models
Contig90.trna1 (50747-50823) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (50781-50783) Score: 94.31
HMM Sc=75.62 Sec struct Sc=18.69
* | * | * | * | * | * | * | *
Seq: GGGTCGGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCTCGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig90.trna2 (50910-50985) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (50943-50945) Score: 94.08
HMM Sc=76.07 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGATAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig90.trna3 (54433-54509) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (54467-54469) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig91.trna1 (591173-591249) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (591207-591209) Score: 94.31
HMM Sc=75.62 Sec struct Sc=18.69
* | * | * | * | * | * | * | *
Seq: GGGTCGGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCTCGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig91.trna2 (591336-591411) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (591369-591371) Score: 94.08
HMM Sc=76.07 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGATAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig91.trna3 (594859-594935) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (594893-594895) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig91.trna4 (718149-718225) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (718183-718185) Score: 94.31
HMM Sc=75.62 Sec struct Sc=18.69
* | * | * | * | * | * | * | *
Seq: GGGTCGGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCTCGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig91.trna5 (718312-718387) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (718345-718347) Score: 94.08
HMM Sc=76.07 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGATAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig91.trna6 (721835-721911) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (721869-721871) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig91.trna7 (864311-864236) Length: 76 bp
Type: Gly Anticodon: TCC at 34-36 (864278-864276) Score: 96.27
HMM Sc=76.57 Sec struct Sc=19.70
* | * | * | * | * | * | * | *
Seq: GCGGACGTAGCTCAGTTGGTAGAGCACCTGCCTTCCAAGCAGGATGtCGCGAGTTCGAACCTCGTCGTCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig91.trna8 (751621-751545) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (751587-751585) Score: 102.45
HMM Sc=81.90 Sec struct Sc=20.55
* | * | * | * | * | * | * | *
Seq: GGCGAGGTAGCTCAGCTGGTtAGAGCACACGACTCATAATCGTGGGGtCGGGGGTTCAAGTCCCCCCCTCGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig91.trna9 (696998-696909) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (696964-696962) Score: 67.73
HMM Sc=35.72 Sec struct Sc=32.01
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCGGCGGTCTCGAAAACCGTTGTCGGTGTGAGCCGACCCAGGGTTCGAATCCCTGTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig91.trna10 (541902-541828) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (541870-541868) Score: 86.21
HMM Sc=60.80 Sec struct Sc=25.41
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGCTCAGGGGTAGAGCATTACCTTGCCAAGGTAAGGGtCGTGAGTTCGAATCTCATCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig91.trna11 (259222-259148) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (259190-259188) Score: 87.59
HMM Sc=63.64 Sec struct Sc=23.95
* | * | * | * | * | * | * |
Seq: TCCGGCGTAGCTCAGCGGTAGAGCAGTTGACTGTTAATCAATTGGtCGTAGGTTCGATCCCTACCGCCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna1 (100952-101027) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (100985-100987) Score: 84.16
HMM Sc=67.33 Sec struct Sc=16.83
* | * | * | * | * | * | * | *
Seq: GGGGTCATAGCTCAGTTGGGAGAGCGCTTGAATGGCATTCAAGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna2 (163765-163841) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (163799-163801) Score: 90.53
HMM Sc=67.35 Sec struct Sc=23.18
* | * | * | * | * | * | * | *
Seq: CGGAGCGTAGCGCAGCCtGGTAGCGCACCTGCTTCGGGAGCAGGGGGtCGGAGGTTCGAATCCTCTCGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna3 (312778-312854) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (312812-312814) Score: 85.01
HMM Sc=57.96 Sec struct Sc=27.05
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCATCAGACTACGAATCTGAGGGtCGGGCGTTCGAATCGCTCCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna4 (422206-422282) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (422240-422242) Score: 82.95
HMM Sc=56.79 Sec struct Sc=26.16
* | * | * | * | * | * | * | *
Seq: GCCGGCTTAGCTCAGTTGGTtAGAGCACCAGATTGTGGATCTGGGGGtCCCCCGTTCGAGCCGGGGAGTCGGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna5 (600425-600500) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (600458-600460) Score: 92.50
HMM Sc=72.84 Sec struct Sc=19.66
* | * | * | * | * | * | * | *
Seq: GCCCAGATAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGTGtCGCTGGTTCGATTCCGGCTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna6 (669210-669296) Length: 87 bp
Type: Leu Anticodon: GAG at 35-37 (669244-669246) Score: 70.14
HMM Sc=35.55 Sec struct Sc=34.59
* | * | * | * | * | * | * | * | *
Seq: GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGGGTAACtCCCGTGGAAGTTCGAGTCTTCTCGACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.....<<<..>>>>>.......<<<<<<<<<<<<....
Contig97.trna7 (842089-842163) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (842122-842124) Score: 56.90
HMM Sc=33.02 Sec struct Sc=23.88
* | * | * | * | * | * | * |
Seq: GGCCCGTTCGTCTATCGGTtAGGACACCAGGTTTTCAACCTGGGAAGAGGGGTTCGACTCCCCTACGGGCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig97.trna8 (906177-906250) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (906209-906211) Score: 80.56
HMM Sc=63.10 Sec struct Sc=17.46
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGAAGCTTCCCAAGCTTACGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna9 (929780-929863) Length: 84 bp
Type: Leu Anticodon: CAA at 34-36 (929813-929815) Score: 65.92
HMM Sc=35.26 Sec struct Sc=30.66
* | * | * | * | * | * | * | * |
Seq: GCGGTTGTGGCGGAATGGTaGACGCGGGGGTCTCAAACACCCTTTCCTCACGGAGTGTCGGTTCGAGTCCGACCAGCCGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig97.trna10 (1089809-1089883) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (1089841-1089843) Score: 88.03
HMM Sc=65.53 Sec struct Sc=22.50
* | * | * | * | * | * | * |
Seq: GGGCGATTAGCTCAGCGGTAGAGCGCTTCGTTCACATCGAAGATGtCAGCGGTTCAAATCCGTTATCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna11 (1305837-1305927) Length: 91 bp
Type: Ser Anticodon: GCT at 35-37 (1305871-1305873) Score: 75.53
HMM Sc=45.70 Sec struct Sc=29.83
* | * | * | * | * | * | * | * | * |
Seq: GGAGACGTGGCCGAGTGGTcgAAGGCACACCCCTGCTAAGGGTGCAGACCTCTAAaGGGTCTCGAGGGTTCGAATCCCTTCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig97.trna12 (1355467-1355542) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (1355500-1355502) Score: 82.28
HMM Sc=67.99 Sec struct Sc=14.29
* | * | * | * | * | * | * | *
Seq: GGGGTCGTAGCTCAGTTGGGAGAGCGCGTCGTTCGCAATGACGAGGtCAGGGGTTCGATCCCCCTCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna13 (1383135-1383219) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (1383169-1383171) Score: 76.50
HMM Sc=55.08 Sec struct Sc=21.42
* | * | * | * | * | * | * | * |
Seq: GCGGGTGTGGCGAAACTGGTaGACGCACCAGATTTAGGTTCTGGCGCCGAGAGGCGTGGGGGTTCAAATCCCTTCACCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig97.trna14 (1403236-1403309) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (1403268-1403270) Score: 64.27
HMM Sc=42.72 Sec struct Sc=21.55
* | * | * | * | * | * | * |
Seq: GGCGGGTTGGCGGAGAGGTTACGCAGCGGATTGCAAATCCGTGAAGACCGGTTCGATTCCGGTACCCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig97.trna15 (1441592-1441668) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (1441626-1441628) Score: 75.82
HMM Sc=40.16 Sec struct Sc=35.66
* | * | * | * | * | * | * | *
Seq: GGCCCCGTAGCACAACTGGAtAGTGCAGCGGTCTTCTAAACCGCAGGtTCCGCGTTCGAGTCGCGGCGGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna16 (1512266-1512340) Length: 75 bp
Type: Thr Anticodon: TGT at 33-35 (1512298-1512300) Score: 83.61
HMM Sc=64.38 Sec struct Sc=19.23
* | * | * | * | * | * | * |
Seq: GCCGGTGTAGCACAGCGGTAGTGCAGCGGTTTTGTAAACCGAAGGtCGGGGGTTCGATCCCCTCCGCCGGCACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig97.trna17 (1552603-1552677) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (1552635-1552637) Score: 70.60
HMM Sc=43.41 Sec struct Sc=27.19
* | * | * | * | * | * | * |
Seq: TGGGGCGTCGCCAAGTGGTAAGGCAGCGGTTTTTGGTACCGCCATtCGTTGGTTCGAATCCAGCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna18 (1552767-1552841) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (1552799-1552801) Score: 70.60
HMM Sc=43.41 Sec struct Sc=27.19
* | * | * | * | * | * | * |
Seq: TGGGGCGTCGCCAAGTGGTAAGGCAGCGGTTTTTGGTACCGCCATtCGTTGGTTCGAATCCAGCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna19 (1764088-1764162) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (1764120-1764122) Score: 86.21
HMM Sc=60.80 Sec struct Sc=25.41
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGCTCAGGGGTAGAGCATTACCTTGCCAAGGTAAGGGtCGTGAGTTCGAATCTCATCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna20 (1770068-1770143) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (1770101-1770103) Score: 88.72
HMM Sc=70.72 Sec struct Sc=18.00
* | * | * | * | * | * | * | *
Seq: GGGTGGTTAGCTCAGTTGGTAGAGCGTCTCGTTTACACCGAGGATGtCGGGGGTTCGAGCCCCTCACCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna21 (1850753-1850842) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (1850787-1850789) Score: 69.55
HMM Sc=45.14 Sec struct Sc=24.41
* | * | * | * | * | * | * | * | *
Seq: GGAGCGGTGGCCGAGTGGTcgAAGGCGCACGCCTGGAAAGTGTGTAGGCGGGGAACCGTCTCGAGGGTTCGAATCCCTCTCGCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig97.trna22 (1959275-1959352) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (1959310-1959312) Score: 79.26
HMM Sc=57.71 Sec struct Sc=21.55
* | * | * | * | * | * | * | *
Seq: CGGGCCGTGGCGCAGCCtGGTtAGCGCGTCCGTCTGGGGGGCGGAAGGtCGCGAGTTCGAATCTCGCCGGCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna23 (2112636-2112719) Length: 84 bp
Type: Leu Anticodon: TAA at 35-37 (2112670-2112672) Score: 67.26
HMM Sc=38.90 Sec struct Sc=28.36
* | * | * | * | * | * | * | * |
Seq: GCGGGCATGGCGGAATTGGTaGACGCAAGGGTCTTAAACACCCTGTCCTCTGGAGTGCCGGTTCGACCCCGGTTGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>..<<...>>>>>.......<<<<<<<<<<<<....
Contig97.trna24 (2622537-2622612) Length: 76 bp
Type: Arg Anticodon: CCT at 34-36 (2622570-2622572) Score: 85.25
HMM Sc=62.97 Sec struct Sc=22.28
* | * | * | * | * | * | * | *
Seq: GGCCCCGTAGCTCAACGGAtAGAGCGATCCCCTCCTAAGGGATAGGtTGCAGGTTCAAGTCCTGCCGGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna25 (2864994-2865070) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (2865028-2865030) Score: 94.31
HMM Sc=75.62 Sec struct Sc=18.69
* | * | * | * | * | * | * | *
Seq: GGGTCGGTAGCTCAGGTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCTCGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna26 (2865157-2865232) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (2865190-2865192) Score: 94.08
HMM Sc=76.07 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGATAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna27 (2868682-2868758) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (2868716-2868718) Score: 81.76
HMM Sc=54.87 Sec struct Sc=26.89
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig97.trna28 (3069597-3069673) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (3069631-3069633) Score: 88.96
HMM Sc=66.81 Sec struct Sc=22.15
* | * | * | * | * | * | * | *
Seq: CGGAGTGTAGCGCAGCCtGGTAGCGCGCCTGCTTTGGGAGCAGGATGtCGGGGGTTCGAATCCCTCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna29 (3137374-3137299) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (3137341-3137339) Score: 81.70
HMM Sc=63.51 Sec struct Sc=18.19
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTcAGAGCAGGGCGCTCATAACGCCTTGGtTGGGGGTTCGAGTCCCTCCGGGCCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna30 (3044610-3044536) Length: 75 bp
Type: Lys Anticodon: TTT at 33-35 (3044578-3044576) Score: 88.23
HMM Sc=68.06 Sec struct Sc=20.17
* | * | * | * | * | * | * |
Seq: GGGCGGGTAGCTCAGTGGTAGAGCAGCTGACTTTTAATCAGCTGGtCGTGGGTTCGATACCCACCCCGCTCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna31 (2968091-2968016) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (2968058-2968056) Score: 96.40
HMM Sc=78.79 Sec struct Sc=17.61
* | * | * | * | * | * | * | *
Seq: GCCGGTGTAGCTCAGCTGGTAGAGCACGTCATTCGTAATGATGGGGtCGGGGGTTCGAGTCCCTTCACCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna32 (2851733-2851659) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (2851701-2851699) Score: 88.52
HMM Sc=63.45 Sec struct Sc=25.07
* | * | * | * | * | * | * |
Seq: GGGCGGTTAGCTCAGCGGTAGAGCACTACGTTGACATCGTAGTGGtCACTGGTTCGATCCCAGTACCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna33 (2820077-2819993) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (2820043-2820041) Score: 77.05
HMM Sc=47.78 Sec struct Sc=29.27
* | * | * | * | * | * | * | * |
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCACGGTTCAGGTCCGTGTGCCGCAAGGCGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig97.trna34 (2591359-2591284) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (2591326-2591324) Score: 92.43
HMM Sc=72.38 Sec struct Sc=20.05
* | * | * | * | * | * | * | *
Seq: AGGGGTATAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGtCGGGGGTTCGAGTCCCTCTGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna35 (2166291-2166202) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (2166257-2166255) Score: 84.27
HMM Sc=45.99 Sec struct Sc=38.28
* | * | * | * | * | * | * | * | *
Seq: GGAAGAGTGGCCGAGTGGTttAAGGCACTGGTCTTGAAAACCAGCGAGCGGGCAACCGCTCCGTGGGTTCGAATCCCACCTCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig97.trna36 (1914026-1913950) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (1913992-1913990) Score: 92.64
HMM Sc=74.18 Sec struct Sc=18.46
* | * | * | * | * | * | * | *
Seq: GCGGTTGTAGCTCAGTCGGTtAGAGTACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGCCCCGTCAACCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna37 (1913915-1913839) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (1913881-1913879) Score: 92.64
HMM Sc=74.18 Sec struct Sc=18.46
* | * | * | * | * | * | * | *
Seq: GCGGTTGTAGCTCAGTCGGTtAGAGTACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGCCCCGTCAACCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna38 (848994-848920) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (848961-848959) Score: 56.90
HMM Sc=33.02 Sec struct Sc=23.88
* | * | * | * | * | * | * |
Seq: GGCCCGTTCGTCTATCGGTtAGGACACCAGGTTTTCAACCTGGGAAGAGGGGTTCGACTCCCCTACGGGCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig97.trna39 (591774-591700) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (591742-591740) Score: 90.21
HMM Sc=63.62 Sec struct Sc=26.59
* | * | * | * | * | * | * |
Seq: GCTGCAGTAGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGAGAGTTCAATCCTCTCCTGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig97.trna40 (477544-477468) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (477510-477508) Score: 87.88
HMM Sc=58.55 Sec struct Sc=29.33
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGCTGCCCTCCGAAGGCAGAGGtCACACGTTCGAATCGTGTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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