R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|1213442|gb|AAB67741.1| (U48961) isopentenyl pyrophosphate isomerase
[Arabidopsis thaliana]
Length = 262
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | 262
0 50 100 150 200 250
Plus Strand HSPs:
Score = 348 (122.5 bits), Expect = 9.9e-31, P = 9.9e-31
Identities = 74/90 (82%), Positives = 76/90 (84%), Frame = +1
Query: 13 PHTPLSLSASFSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNC 192
P T LS+ A FS A T S DAGMDAVQRRLMFEDECILVDENDRVVGHD+KYNC
Sbjct: 16 PRTQLSVRA-FS-----AVTMTDSNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNC 69
Query: 193 HLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
HLMEKIEAENLLHRAFSVFLFNSKYELLLQ
Sbjct: 70 HLMEKIEAENLLHRAFSVFLFNSKYELLLQ 99
>gi|9759126|dbj|BAB09611.1| (AB005242) isopentenyl pyrophosphate:dimethyllallyl
pyrophosphate isomerase [Arabidopsis thaliana]
Length = 291
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 291
0 50 100 150 200 250
Plus Strand HSPs:
Score = 348 (122.5 bits), Expect = 9.9e-31, P = 9.9e-31
Identities = 74/90 (82%), Positives = 76/90 (84%), Frame = +1
Query: 13 PHTPLSLSASFSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNC 192
P T LS+ A FS A T S DAGMDAVQRRLMFEDECILVDENDRVVGHD+KYNC
Sbjct: 45 PRTQLSVRA-FS-----AVTMTDSNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNC 98
Query: 193 HLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
HLMEKIEAENLLHRAFSVFLFNSKYELLLQ
Sbjct: 99 HLMEKIEAENLLHRAFSVFLFNSKYELLLQ 128
>gi|1085973|pir||S49588 isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2) 1
- Clarkia breweri (fragment) >gi|572635|emb|CAA57947.1| (X82627)
isopentenyl pyrophosphate isomerase [Clarkia breweri]
Length = 290
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 290
0 50 100 150 200 250
Plus Strand HSPs:
Score = 347 (122.2 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 70/91 (76%), Positives = 78/91 (85%), Frame = +1
Query: 19 TPLSLSASFSSH---TSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYN 189
+P+SL+ FS+ +S A T DAGMDAVQRRLMFEDECILVDEND+VVGH+SKYN
Sbjct: 37 SPISLTQRFSAKLTFSSQATTMGEVVDAGMDAVQRRLMFEDECILVDENDKVVGHESKYN 96
Query: 190 CHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
CHLMEKIE+ENLLHRAFSVFLFNSKYELLLQ
Sbjct: 97 CHLMEKIESENLLHRAFSVFLFNSKYELLLQ 127
>gi|6225526|sp|Q39472|IDI1_CLABR ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE I (IPP
ISOMERASE I) (ISOPENTENYL PYROPHOSPHATE ISOMERASE I)
Length = 287
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | 287
0 50 100 150 200 250
Plus Strand HSPs:
Score = 347 (122.2 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 70/91 (76%), Positives = 78/91 (85%), Frame = +1
Query: 19 TPLSLSASFSSH---TSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYN 189
+P+SL+ FS+ +S A T DAGMDAVQRRLMFEDECILVDEND+VVGH+SKYN
Sbjct: 34 SPISLTQRFSAKLTFSSQATTMGEVVDAGMDAVQRRLMFEDECILVDENDKVVGHESKYN 93
Query: 190 CHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
CHLMEKIE+ENLLHRAFSVFLFNSKYELLLQ
Sbjct: 94 CHLMEKIESENLLHRAFSVFLFNSKYELLLQ 124
>gi|7489161|pir||T03399 isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2) -
common tobacco >gi|1695183|emb|CAA70850.1| (Y09634) isopentenyl
pyrophosphate isomerase [Nicotiana tabacum]
Length = 219
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 341 (120.0 bits), Expect = 5.5e-30, P = 5.5e-30
Identities = 67/84 (79%), Positives = 72/84 (85%), Frame = +1
Query: 31 LSASFSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKI 210
++AS ++S ADA MDAVQRRLMFEDECILVDENDRVVGHD+KYNCHLMEKI
Sbjct: 43 IAASLRCYSSSTRMGDAIADANMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKI 102
Query: 211 EAENLLHRAFSVFLFNSKYELLLQ 282
EAENLLHRAFSVFLFNSKYELLLQ
Sbjct: 103 EAENLLHRAFSVFLFNSKYELLLQ 126
>gi|2129625|pir||S71369 isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2) 1
- Arabidopsis thaliana >gi|1305410|gb|AAC49932.1| (U47324)
isopentenyl diphosphate:dimethylallyl diphosphate isomerase
[Arabidopsis thaliana]
Length = 233
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 233
0 50 100 150 200
Plus Strand HSPs:
Score = 338 (119.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 65/67 (97%), Positives = 66/67 (98%), Frame = +1
Query: 82 SADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNS 261
S DAGMDAVQRRLMFEDECILVDENDRVVGHD+KYNCHLMEKIEAENLLHRAFSVFLFNS
Sbjct: 4 SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNS 63
Query: 262 KYELLLQ 282
KYELLLQ
Sbjct: 64 KYELLLQ 70
>gi|6226828|sp|Q38929|IDI1_ARATH ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE I (IPP
ISOMERASE I) (ISOPENTENYL PYROPHOSPHATE ISOMERASE I)
Length = 233
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 233
0 50 100 150 200
Plus Strand HSPs:
Score = 338 (119.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 65/67 (97%), Positives = 66/67 (98%), Frame = +1
Query: 82 SADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNS 261
S DAGMDAVQRRLMFEDECILVDENDRVVGHD+KYNCHLMEKIEAENLLHRAFSVFLFNS
Sbjct: 4 SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNS 63
Query: 262 KYELLLQ 282
KYELLLQ
Sbjct: 64 KYELLLQ 70
>gi|6225532|sp|O48965|IDI2_CAMAC ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE II
(IPP ISOMERASE II) (ISOPENTENYL PYROPHOSPHATE ISOMERASE II)
>gi|2736288|gb|AAB94133.1| (AF031080) isopentenyl diphosphate
isomerase II [Camptotheca acuminata]
Length = 309
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | | 309
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 337 (118.6 bits), Expect = 1.5e-29, P = 1.5e-29
Identities = 68/95 (71%), Positives = 78/95 (82%), Frame = +1
Query: 7 TTPHTPLSLSASFSSHTSMAHTSL---PSADAGMDAVQRRLMFEDECILVDENDRVVGHD 177
++ H + +S+ SS + A TS + DAGMDAVQRRLMFEDECILVDEND VVGHD
Sbjct: 51 SSSHLSVRVSSYHSSVAAKATTSAMGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHD 110
Query: 178 SKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
+KYNCHLMEKIE++NLLHRAFSVFLFNSKYELLLQ
Sbjct: 111 TKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQ 145
>gi|6856550|gb|AAF29973.1|AF188060_1 (AF188060) isopentenyl
pyrophosphate:dimethyllallyl pyrophosphate isomerase [Adonis
palaestina]
Length = 295
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 295
0 50 100 150 200 250
Plus Strand HSPs:
Score = 337 (118.6 bits), Expect = 1.5e-29, P = 1.5e-29
Identities = 67/84 (79%), Positives = 74/84 (88%), Frame = +1
Query: 31 LSASFSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKI 210
L+ F+S ++M ADAGMDAVQ+RLMF+DECILVDEND+VVGHDSKYNCHLMEKI
Sbjct: 52 LNRLFASTSTMGEV----ADAGMDAVQKRLMFDDECILVDENDKVVGHDSKYNCHLMEKI 107
Query: 211 EAENLLHRAFSVFLFNSKYELLLQ 282
EAENLLHRAFSVFLFNSKYELLLQ
Sbjct: 108 EAENLLHRAFSVFLFNSKYELLLQ 131
>gi|6856564|gb|AAF29980.1|AF188067_1 (AF188067) isopentenyl
pyrophosphate:dimethyllallyl pyrophosphate isomerase [Arabidopsis
thaliana]
Length = 261
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 337 (118.6 bits), Expect = 1.5e-29, P = 1.5e-29
Identities = 72/90 (80%), Positives = 75/90 (83%), Frame = +1
Query: 13 PHTPLSLSASFSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNC 192
P T L + A FS A T S DAGMDAVQRRLMFEDECILVDEN+RVVGHD+KYNC
Sbjct: 15 PRTQLFVRA-FS-----AVTMTDSNDAGMDAVQRRLMFEDECILVDENNRVVGHDTKYNC 68
Query: 193 HLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
HLMEKIEAENLLHRAFSVFLFNSKYELLLQ
Sbjct: 69 HLMEKIEAENLLHRAFSVFLFNSKYELLLQ 98
>gi|6856552|gb|AAF29974.1|AF188061_1 (AF188061) isopentenyl
pyrophosphate:dimethyllallyl pyrophosphate isomerase [Adonis
palaestina]
Length = 267
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 267
0 50 100 150 200 250
Plus Strand HSPs:
Score = 334 (117.6 bits), Expect = 3.0e-29, P = 3.0e-29
Identities = 66/84 (78%), Positives = 74/84 (88%), Frame = +1
Query: 31 LSASFSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKI 210
L+ F+S ++M + DAGMDAVQ+RLMF+DECILVDEND+VVGHDSKYNCHLMEKI
Sbjct: 24 LNRLFASTSTMGEVT----DAGMDAVQKRLMFDDECILVDENDKVVGHDSKYNCHLMEKI 79
Query: 211 EAENLLHRAFSVFLFNSKYELLLQ 282
EAENLLHRAFSVFLFNSKYELLLQ
Sbjct: 80 EAENLLHRAFSVFLFNSKYELLLQ 103
>gi|7110585|gb|AAF36996.1|AF236092_1 (AF236092) isopentenyl
pyrophosphate:dimethylallyl pyrophosphate isomerase [Brassica
oleracea var. botrytis]
Length = 281
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | 281
0 50 100 150 200 250
Plus Strand HSPs:
Score = 331 (116.5 bits), Expect = 6.3e-29, P = 6.3e-29
Identities = 70/93 (75%), Positives = 77/93 (82%), Frame = +1
Query: 13 PHTPL-SLSAS---FSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDS 180
P +PL S+S S F + + A T+ + DAGMDAVQRRLMFEDECILVDE DRVVGHDS
Sbjct: 26 PQSPLRSVSISPRKFRAFSGAAMTT-DAKDAGMDAVQRRLMFEDECILVDETDRVVGHDS 84
Query: 181 KYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
KYNCHLME IEA+NLLHRAFSVFLFNS YELLLQ
Sbjct: 85 KYNCHLMENIEAKNLLHRAFSVFLFNSNYELLLQ 118
>gi|6225531|sp|Q42553|IDI2_ARATH ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE II
(IPP ISOMERASE II) (ISOPENTENYL PYROPHOSPHATE ISOMERASE II)
>gi|2146741|pir||S71370 isopentenyl-diphosphate Delta-isomerase (EC
5.3.3.2) 2 - Arabidopsis thaliana >gi|1293565|gb|AAC49920.1|
(U49259) isopentenyl diphosphate:dimethylallyl diphosphate
isomerase [Arabidopsis thaliana]
>gi|6728984|gb|AAF26982.1|AC018363_27 (AC018363) isopentenyl
diphosphate:dimethylallyl diphosphate isomerase (IPP2) [Arabidopsis
thaliana]
Length = 284
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | 284
0 50 100 150 200 250
Plus Strand HSPs:
Score = 329 (115.8 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 68/92 (73%), Positives = 75/92 (81%), Frame = +1
Query: 16 HTPLS-LSA-SFSSHTSMAHTSLPSA-DAGMDAVQRRLMFEDECILVDENDRVVGHDSKY 186
H PLS +S + + + T++ DAGMDAVQRRLMFEDECILVDE DRVVGHDSKY
Sbjct: 30 HRPLSSISPRKLPNFRAFSGTAMTDTKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKY 89
Query: 187 NCHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
NCHLME IEA+NLLHRAFSVFLFNSKYELLLQ
Sbjct: 90 NCHLMENIEAKNLLHRAFSVFLFNSKYELLLQ 121
>gi|6225525|sp|O48964|IDI1_CAMAC ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE I (IPP
ISOMERASE I) (ISOPENTENYL PYROPHOSPHATE ISOMERASE I)
>gi|2736286|gb|AAB94132.1| (AF031079) isopentenyl diphosphate
isomerase I [Camptotheca acuminata]
Length = 235
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 235
0 50 100 150 200
Plus Strand HSPs:
Score = 322 (113.3 bits), Expect = 5.6e-28, P = 5.6e-28
Identities = 60/67 (89%), Positives = 65/67 (97%), Frame = +1
Query: 82 SADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNS 261
+ DAGMDAVQ+RLMFED+CILVDEND VVGHD+KYNCHLMEKIE+ENLLHRAFSVFLFNS
Sbjct: 5 ATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNS 64
Query: 262 KYELLLQ 282
KYELLLQ
Sbjct: 65 KYELLLQ 71
>gi|1213450|gb|AAB67743.1| (U48963) isopentenyl pyrophosphate isomerase
[Clarkia breweri]
Length = 303
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | || 303
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 320 (112.6 bits), Expect = 9.2e-28, P = 9.2e-28
Identities = 63/88 (71%), Positives = 74/88 (84%), Frame = +1
Query: 22 PLSLSASFSSHTSMAHTSL-PSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHL 198
PLSL S S+ + ++ +ADAGMDAVQRRLMF+DECILVDE DRVVGH+SKYNCH+
Sbjct: 53 PLSLRVSLSTRSIATSIAMGEAADAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHM 112
Query: 199 MEKIEAENLLHRAFSVFLFNSKYELLLQ 282
EKIE+ N+LHRAFSVFLFNSK+ELLLQ
Sbjct: 113 WEKIESGNMLHRAFSVFLFNSKFELLLQ 140
>gi|6225533|sp|Q39471|IDI2_CLABR ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE II
(IPP ISOMERASE II) (ISOPENTENYL PYROPHOSPHATE ISOMERASE II)
Length = 286
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 286
0 50 100 150 200 250
Plus Strand HSPs:
Score = 320 (112.6 bits), Expect = 9.2e-28, P = 9.2e-28
Identities = 63/88 (71%), Positives = 74/88 (84%), Frame = +1
Query: 22 PLSLSASFSSHTSMAHTSL-PSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHL 198
PLSL S S+ + ++ +ADAGMDAVQRRLMF+DECILVDE DRVVGH+SKYNCH+
Sbjct: 36 PLSLRVSLSTRSIATSIAMGEAADAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHM 95
Query: 199 MEKIEAENLLHRAFSVFLFNSKYELLLQ 282
EKIE+ N+LHRAFSVFLFNSK+ELLLQ
Sbjct: 96 WEKIESGNMLHRAFSVFLFNSKFELLLQ 123
>gi|6856562|gb|AAF29979.1|AF188066_1 (AF188066) isopentenyl
pyrophosphate:dimethyllallyl pyrophosphate isomerase [Arabidopsis
thaliana]
Length = 284
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | 284
0 50 100 150 200 250
Plus Strand HSPs:
Score = 320 (112.6 bits), Expect = 9.2e-28, P = 9.2e-28
Identities = 67/92 (72%), Positives = 74/92 (80%), Frame = +1
Query: 16 HTPLS-LSA-SFSSHTSMAHTSLPSA-DAGMDAVQRRLMFEDECILVDENDRVVGHDSKY 186
H PLS +S + + + T++ DAGMDAVQRRLMFEDECILVDE DRVVGH SKY
Sbjct: 30 HRPLSSISPRKLPNFRAFSGTAMTDTKDAGMDAVQRRLMFEDECILVDETDRVVGHVSKY 89
Query: 187 NCHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
NCHLME IEA+NLLHRAFSVFLFNSKYELLLQ
Sbjct: 90 NCHLMENIEAKNLLHRAFSVFLFNSKYELLLQ 121
>gi|6856556|gb|AAF29976.1|AF188063_1 (AF188063) isopentenyl
pyrophosphate:dimethyllallyl pyrophosphate isomerase [Lactuca
sativa]
Length = 263
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 263
0 50 100 150 200 250
Plus Strand HSPs:
Score = 315 (110.9 bits), Expect = 3.1e-27, P = 3.1e-27
Identities = 59/71 (83%), Positives = 65/71 (91%), Frame = +1
Query: 70 TSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVF 249
T+ D+GMDAVQRRLMF+DECILVDEND V+GHD+KYNCHLMEKIE +NLLHRAFSVF
Sbjct: 29 TAAMGDDSGMDAVQRRLMFDDECILVDENDNVLGHDTKYNCHLMEKIEKDNLLHRAFSVF 88
Query: 250 LFNSKYELLLQ 282
LFNSKYELLLQ
Sbjct: 89 LFNSKYELLLQ 99
>gi|6856560|gb|AAF29978.1|AF188065_1 (AF188065) isopentenyl
pyrophosphate:dimethyllallyl pyrophosphate isomerase [Oryza sativa]
Length = 254
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | || 254
0 50 100 150 200 250
Plus Strand HSPs:
Score = 315 (110.9 bits), Expect = 3.1e-27, P = 3.1e-27
Identities = 62/81 (76%), Positives = 69/81 (85%), Frame = +1
Query: 40 SFSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAE 219
+FS+ MA + DAGMD VQ+RLMF+DECILVDE D VVGH+SKYNCHLMEKIE+E
Sbjct: 11 AFSA-ARMAGAAAAVEDAGMDEVQKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESE 69
Query: 220 NLLHRAFSVFLFNSKYELLLQ 282
NLLHRAFSVFLFNSKYELLLQ
Sbjct: 70 NLLHRAFSVFLFNSKYELLLQ 90
>gi|6856554|gb|AAF29975.1|AF188062_1 (AF188062) isopentenyl
pyrophosphate:dimethyllallyl pyrophosphate isomerase [Lactuca
sativa]
Length = 280
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 280
0 50 100 150 200 250
Plus Strand HSPs:
Score = 311 (109.5 bits), Expect = 8.3e-27, P = 8.3e-27
Identities = 63/90 (70%), Positives = 70/90 (77%), Frame = +1
Query: 13 PHTPLSLSASFSSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNC 192
P P +AS H +S D+ MDAVQRRLMF+DECILVDEND+VVGHD+KYNC
Sbjct: 30 PPMPSLAAASVFLHPL---SSAAMGDSSMDAVQRRLMFDDECILVDENDKVVGHDTKYNC 86
Query: 193 HLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
HLMEKIE N+LHRAFSVFLFNSKYELLLQ
Sbjct: 87 HLMEKIEKGNMLHRAFSVFLFNSKYELLLQ 116
>gi|6225534|sp|Q39664|IDI2_CLAXA ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE II
(IPP ISOMERASE II) (ISOPENTENYL PYROPHOSPHATE ISOMERASE II)
>gi|1213446|gb|AAB67742.1| (U48962) isopentenyl pyrophosphate
isomerase [Clarkia xantiana]
Length = 290
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 290
0 50 100 150 200 250
Plus Strand HSPs:
Score = 310 (109.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 62/89 (69%), Positives = 74/89 (83%), Frame = +1
Query: 22 PLSLSASFSSHTSMAHTSL--PSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCH 195
PLS+ AS S+ + ++ +ADAGMDAVQRRLMF+DECILVDE D VVGH+SKYNCH
Sbjct: 39 PLSVRASLSTRSIATSIAMGEAAADAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCH 98
Query: 196 LMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
L EKIE+ N+LHRAF+VFLFNSK+ELLLQ
Sbjct: 99 LWEKIESGNMLHRAFTVFLFNSKFELLLQ 127
>gi|6856558|gb|AAF29977.1|AF188064_1 (AF188064) isopentenyl
pyrophosphate:dimethyllallyl pyrophosphate isomerase [Tagetes
erecta]
Length = 245
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 245
0 50 100 150 200
Plus Strand HSPs:
Score = 297 (104.5 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 56/65 (86%), Positives = 60/65 (92%), Frame = +1
Query: 88 DAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKY 267
D+GMDAVQRRLMF+DECILVDE D VVGHD+KYNCHLMEKIE +LHRAFSVFLFNSKY
Sbjct: 17 DSGMDAVQRRLMFDDECILVDECDNVVGHDTKYNCHLMEKIETGKMLHRAFSVFLFNSKY 76
Query: 268 ELLLQ 282
ELLLQ
Sbjct: 77 ELLLQ 81
>gi|9971806|gb|AAG10423.1| (AF251011) isopentenyl pyrophosphate:dimethyllallyl
pyrophosphate isomerase [Tagetes erecta]
Length = 262
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 262
0 50 100 150 200 250
Plus Strand HSPs:
Score = 295 (103.8 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 56/65 (86%), Positives = 59/65 (90%), Frame = +1
Query: 88 DAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKY 267
D+GMDAVQRRLMF DECILVDE D VVGHD+KYNCHLMEKIE +LHRAFSVFLFNSKY
Sbjct: 34 DSGMDAVQRRLMFNDECILVDECDNVVGHDTKYNCHLMEKIETGKMLHRAFSVFLFNSKY 93
Query: 268 ELLLQ 282
ELLLQ
Sbjct: 94 ELLLQ 98
>gi|5305667|gb|AAD41765.1|AF111842_1 (AF111842) isopentenyl pyrophosphate
isomerase [Hevea brasiliensis] >gi|5305669|gb|AAD41766.1|AF111843_1
(AF111843) isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
Length = 234
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 234
0 50 100 150 200
Plus Strand HSPs:
Score = 278 (97.9 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 54/65 (83%), Positives = 56/65 (86%), Frame = +1
Query: 88 DAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKY 267
D GMDAVQ+RLMF+DECILVDEND VVGH SKYNCHL E I N LHRAFSVFLFNSKY
Sbjct: 6 DVGMDAVQKRLMFDDECILVDENDGVVGHASKYNCHLWENILKGNALHRAFSVFLFNSKY 65
Query: 268 ELLLQ 282
ELLLQ
Sbjct: 66 ELLLQ 70
>gi|12313657|dbj|BAB21062.1| (AB046213) putative IPP isomerase [Sonchus
oleraceus]
Length = 120
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 120
0 50 100
Plus Strand HSPs:
Score = 218 (76.7 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 41/44 (93%), Positives = 42/44 (95%), Frame = +1
Query: 151 ENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
END VVGHD+KYNCHLMEKIE ENLLHRAFSVFLFNSKYELLLQ
Sbjct: 1 ENDNVVGHDTKYNCHLMEKIEKENLLHRAFSVFLFNSKYELLLQ 44
>gi|10801554|dbj|BAB16690.1| (AB041629) IPP isomerae [Eucommia ulmoides]
Length = 120
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 120
0 50 100
Plus Strand HSPs:
Score = 215 (75.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 40/44 (90%), Positives = 43/44 (97%), Frame = +1
Query: 151 ENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
E+D VVGHD+KYNCHLMEKIE+ENLLHRAFSVFLFNSKYELLLQ
Sbjct: 1 ESDHVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQ 44
>gi|12313659|dbj|BAB21063.1| (AB046214) putative IPPisomerase [Lactuca indica]
Length = 121
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 121
0 50 100
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 34/39 (87%), Positives = 37/39 (94%), Frame = +1
Query: 151 ENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKY 267
END V+GHD+KYNCHLMEKIE +NLLHRAFSVFLFNSKY
Sbjct: 1 ENDNVLGHDTKYNCHLMEKIEKDNLLHRAFSVFLFNSKY 39
>gi|6225530|sp|O35760|IDI1_RAT ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE (IPP
ISOMERASE) (ISOPENTENYL PYROPHOSPHATE ISOMERASE)
>gi|2253701|gb|AAC53282.1| (AF003835) isopentenyl
diphosphate:dimethylallyl diphosphate isomerase [Rattus norvegicus]
Length = 227
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 227
0 50 100 150 200
Plus Strand HSPs:
Score = 173 (60.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 37/69 (53%), Positives = 51/69 (73%), Frame = +1
Query: 76 LPSADAG-MDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFL 252
+P +A +D Q +L+ E CIL+DEND +G D+K NCHL E I+ + L+HRAFSVFL
Sbjct: 1 MPEINASNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENID-KGLIHRAFSVFL 58
Query: 253 FNSKYELLLQ 282
FN++ +LLLQ
Sbjct: 59 FNTENKLLLQ 68
>gi|6225528|sp|O35586|IDI1_MESAU ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE (IPP
ISOMERASE) (ISOPENTENYL PYROPHOSPHATE ISOMERASE)
>gi|2253703|gb|AAC53283.1| (AF003836) isopentenyl
diphosphate:dimethylallyl diphosphate isomerase [Mesocricetus
auratus]
Length = 227
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 227
0 50 100 150 200
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 36/62 (58%), Positives = 47/62 (75%), Frame = +1
Query: 97 MDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELL 276
+D Q +L+ E CIL+DEND +G D+K NCHL E I+ + LLHRAFSVFLFN++ +LL
Sbjct: 9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENID-KGLLHRAFSVFLFNTENKLL 66
Query: 277 LQ 282
LQ
Sbjct: 67 LQ 68
>gi|4758584 ref|NP_004499.1| isopentenyl-diphosphate delta isomerase; IPP
isomerase [Homo sapiens] >gi|539623|pir||A53028
isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2) homolog -
human >gi|488750|emb|CAA34890.1| (X17025) homologue of yeast IPP
isomerase [Homo sapiens]
Length = 228
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 228
0 50 100 150 200
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 36/62 (58%), Positives = 47/62 (75%), Frame = +1
Query: 97 MDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELL 276
+D Q +L+ E CIL+DEND +G ++K NCHL E IE + LLHRAFSVFLFN++ +LL
Sbjct: 10 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIE-KGLLHRAFSVFLFNTENKLL 67
Query: 277 LQ 282
LQ
Sbjct: 68 LQ 69
>gi|6225527|sp|Q13907|IDI1_HUMAN ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE (IPP
ISOMERASE) (ISOPENTENYL PYROPHOSPHATE ISOMERASE)
Length = 227
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 227
0 50 100 150 200
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 36/62 (58%), Positives = 47/62 (75%), Frame = +1
Query: 97 MDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELL 276
+D Q +L+ E CIL+DEND +G ++K NCHL E IE + LLHRAFSVFLFN++ +LL
Sbjct: 9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIE-KGLLHRAFSVFLFNTENKLL 66
Query: 277 LQ 282
LQ
Sbjct: 67 LQ 68
>gi|12735364 ref|XP_011865.1| isopentenyl-diphosphate delta isomerase [Homo
sapiens]
Length = 143
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 36/62 (58%), Positives = 47/62 (75%), Frame = +1
Query: 97 MDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELL 276
+D Q +L+ E CIL+DEND +G ++K NCHL E IE + LLHRAFSVFLFN++ +LL
Sbjct: 26 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIE-KGLLHRAFSVFLFNTENKLL 83
Query: 277 LQ 282
LQ
Sbjct: 84 LQ 85
>gi|3421421|gb|AAC32208.1| (AF082325) isopentenyl pyrophosphate:dimethylallyl
pyrophosphate isomerase [Haematococcus pluvialis]
Length = 305
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 40/85 (47%), Positives = 49/85 (57%), Frame = +1
Query: 28 SLSASFS-SHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLME 204
S+SA+ S + H S AG + Q LM +DECILVD D + GH SK CH
Sbjct: 43 SISANLSRAEDRTDHMRGASTWAGGQS-QDELMLKDECILVDVEDNITGHASKLECHKFL 101
Query: 205 KIEAENLLHRAFSVFLFNSKYELLLQ 282
+ LLHRAFSVFLF+ + LLLQ
Sbjct: 102 PHQPAGLLHRAFSVFLFDDQGRLLLQ 127
>gi|6325140 ref|NP_015208.1| Isopentenyl diphosphate:dimethylallyl diphosphate
isomerase (IPP isomerase); Idi1p [Saccharomyces cerevisiae]
>gi|124838|sp|P15496|IDI1_YEAST ISOPENTENYL-DIPHOSPHATE
DELTA-ISOMERASE (IPP ISOMERASE) (ISOPENTENYL PYROPHOSPHATE
ISOMERASE) >gi|101420|pir||A34440 isopentenyl-diphosphate
Delta-isomerase (EC 5.3.3.2) - yeast (Saccharomyces cerevisiae)
>gi|171760|gb|AAA34708.1| (J05090) isopentenyl
diphosphate:dimethylallyl diphosphate isomerase (EC 5.3.3.2)
[Saccharomyces cerevisiae] >gi|1163097|gb|AAB68245.1| (U43503)
Idi1p,Lph10p [Saccharomyces cerevisiae]
Length = 288
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 288
0 50 100 150 200 250
Plus Strand HSPs:
Score = 160 (56.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 39/79 (49%), Positives = 52/79 (65%), Frame = +1
Query: 46 SSHTSMAHTSLPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENL 225
SS TS + + +G D Q +LM E+ CI++D +D +G +K CHLME IE + L
Sbjct: 46 SSETSNDESG-ETCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTKKVCHLMENIE-KGL 102
Query: 226 LHRAFSVFLFNSKYELLLQ 282
LHRAFSVF+FN + ELLLQ
Sbjct: 103 LHRAFSVFIFNEQGELLLQ 121
>gi|11362217|pir||T51248 isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2) 2
[validated] - Haematococcus pluvialis >gi|3421423|gb|AAC32209.1|
(AF082326) isopentenyl pyrophosphate:dimethylallyl pyrophosphate
isomerase [Haematococcus pluvialis]
Length = 293
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | 293
0 50 100 150 200 250
Plus Strand HSPs:
Score = 159 (56.0 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 32/58 (55%), Positives = 38/58 (65%), Frame = +1
Query: 109 QRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
Q LM +DECILVD +D + GH SK CH + LLHRAFSVFLF+ + LLLQ
Sbjct: 58 QDELMLKDECILVDADDNITGHASKLECHKFLPHQPAGLLHRAFSVFLFDDQGRLLLQ 115
>gi|11362218|pir||T46812 isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2)
[imported] - Haematococcus pluvialis >gi|3790384|dbj|BAA33978.1|
(AB019034) IPP isomerase [Haematococcus pluvialis]
Length = 293
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | 293
0 50 100 150 200 250
Plus Strand HSPs:
Score = 158 (55.6 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 32/58 (55%), Positives = 38/58 (65%), Frame = +1
Query: 109 QRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
Q LM +DECILVD +D + GH SK CH + LLHRAFSVFLF+ + LLLQ
Sbjct: 58 QDELMLKDECILVDADDNITGHVSKLECHKFLPHQPAGLLHRAFSVFLFDDQGRLLLQ 115
>gi|1352472|sp|Q10132|IDI1_SCHPO ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE (IPP
ISOMERASE) (ISOPENTENYL PYROPHOSPHATE ISOMERASE)
>gi|1076895|pir||A56442 isopentenyl-diphosphate Delta-isomerase (EC
5.3.3.2) - fission yeast (Schizosaccharomyces pombe)
>gi|7492117|pir||T37986 isopentenyl-diphosphate delta-isomerase -
fission yeast (Schizosaccharomyces pombe) >gi|7492118|pir||T39272
isopentenyl-diphosphate delta-isomerase - fission yeast
(Schizosaccharomyces pombe) >gi|717131|gb|AAA80596.1| (U21154)
isopentenyl diphosphate isomerase [Schizosaccharomyces pombe]
>gi|1216255|emb|CAA93797.1| (Z69909) isopentenyl-diphosphate
delta-isomerase [Schizosaccharomyces pombe]
>gi|5817281|emb|CAB53731.1| (AL110295) isopentenyl-diphosphate
delta-isomerase [Schizosaccharomyces pombe]
Length = 227
Frame 1 hits (HSPs): _____________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | | | 227
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM02460: 19..178
DOMO DM03971: 180..226
Entrez active site: BY SIMILARITY. 87
Entrez active site: BY SIMILARITY. 152
PRODOM PD004109: IDI1(9) IDI2(4) IDI(4) 19..212
__________________
Plus Strand HSPs:
Score = 150 (52.8 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 33/61 (54%), Positives = 43/61 (70%), Frame = +1
Query: 100 DAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLL 279
D Q RLM E+ CI+VDEND + + +K CHLME I + LLHRAFS+F+F+ + LLL
Sbjct: 11 DEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENIN-KGLLHRAFSMFIFDEQNRLLL 68
Query: 280 Q 282
Q
Sbjct: 69 Q 69
>gi|7300729|gb|AAF55875.1| (AE003734) CG5919 gene product [Drosophila
melanogaster]
Length = 256
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
Plus Strand HSPs:
Score = 145 (51.0 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 31/69 (44%), Positives = 46/69 (66%), Frame = +1
Query: 76 LPSADAGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLF 255
+P+ A D +Q + +++CILVD ND+ +G SK +CH + + LHRAFSVFLF
Sbjct: 32 VPTEFAVHDPLQAHAL-KEQCILVDANDQAIGAASKADCHRVHPETNDVKLHRAFSVFLF 90
Query: 256 NSKYELLLQ 282
NS+ E+L+Q
Sbjct: 91 NSQGEMLVQ 99
>gi|7484383|pir||T07979 isopentenyl-diphosphate Delta-isomerase (EC 5.3.3.2)
ipi1 - Chlamydomonas reinhardtii >gi|3450873|gb|AAC32601.1|
(AF082869) isopentenyl pyrophosphate:dimethylallyl pyrophosphate
isomerase [Chlamydomonas reinhardtii]
Length = 307
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | | 307
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/85 (42%), Positives = 47/85 (55%), Frame = +1
Query: 37 ASFSSHTSMAHTSLPSAD-AGMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIE 213
A S S+A S+ G Q M DEC++VDE DR++G +KY+CH E +
Sbjct: 43 AGLSQAQSVAVRMASSSTWEGTGLSQDDFMQRDECLVVDEQDRLLGTANKYDCHRFEAAK 102
Query: 214 AE--NLLHRAFSVFLFNSKYELLLQ 282
+ LHRAFSVFLF+ LLLQ
Sbjct: 103 GQPCGRLHRAFSVFLFSPDGRLLLQ 127
>gi|6225529|sp|O42641|IDI1_PHARH ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE (IPP
ISOMERASE) (ISOPENTENYL PYROPHOSPHATE ISOMERASE)
>gi|2687843|emb|CAA75796.1| (Y15811) isopentenyl
diphosphate:dimethylallyl diphosphate isomerase [Xanthophyllomyces
dendrorhous]
Length = 251
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | || 251
0 50 100 150 200 250
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/62 (58%), Positives = 41/62 (66%), Frame = +1
Query: 100 DAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEA-ENLLHRAFSVFLFN-SKYEL 273
D Q RLM E+ CILV+ +D G SK CHLM I A ++LLHRAFSVFLF S L
Sbjct: 23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGAL 81
Query: 274 LLQ 282
LLQ
Sbjct: 82 LLQ 84
>gi|3790386|dbj|BAA33979.1| (AB019035) IPP isomerase [Xanthophyllomyces
dendrorhous]
Length = 251
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | || 251
0 50 100 150 200 250
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/62 (58%), Positives = 41/62 (66%), Frame = +1
Query: 100 DAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEA-ENLLHRAFSVFLFN-SKYEL 273
D Q RLM E+ CILV+ +D G SK CHLM I A ++LLHRAFSVFLF S L
Sbjct: 23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGAL 81
Query: 274 LLQ 282
LLQ
Sbjct: 82 LLQ 84
>gi|7188790|gb|AAF37873.1| (AF234169) isopentenyl pyrophosphate isomerase
[Dictyostelium discoideum]
Length = 239
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 239
0 50 100 150 200
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 31/63 (49%), Positives = 42/63 (66%), Frame = +1
Query: 94 GMDAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYEL 273
G + +Q LM ++ECI+VD +D+ + SK HLM I LLHRAFS+FLFN + +L
Sbjct: 15 GHNEIQIELM-KEECIVVDNDDKPIRPGSKKETHLMVNIN-NGLLHRAFSIFLFNGEGKL 72
Query: 274 LLQ 282
LLQ
Sbjct: 73 LLQ 75
>gi|465964|sp|P34511|YMX3_CAEEL HYPOTHETICAL 95.8 KD PROTEIN K06H7.3 IN
CHROMOSOME III >gi|630677|pir||S44843 K06H7.3 protein -
Caenorhabditis elegans
Length = 831
Frame 1 hits (HSPs): ____
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 831
0 150 300 450 600 750
__________________
Annotated Domains:
DOMO DM02460: 627..779
PFAM IPP_isomerase: Isopentenyl-diphosphate d 626..815
PRODOM PD143027: YMX3_CAEEL 1..144
PRODOM PD043079: O74977(1) Q04311(1) YMX3(1) 146..317
PRODOM PD100750: YMX3_CAEEL 319..625
PRODOM PD004109: IDI1(9) IDI2(4) IDI(4) 627..811
PROSITE THIOL_PROTEASE_HIS: Eukaryotic thiol (cy 716..726
__________________
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 0.00026, P = 0.00026
Identities = 30/61 (49%), Positives = 38/61 (62%), Frame = +1
Query: 100 DAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLL 279
DA Q M E +CI VDENDR++G SK H ++ +LHRAFSVF F S +LL+
Sbjct: 619 DAQQVEYMRE-QCINVDENDRIIGGVSKREAHSSYQL----VLHRAFSVFSFTSDNKLLM 673
Query: 280 Q 282
Q
Sbjct: 674 Q 674
>gi|9802981|gb|AAF99988.1| (L15314) contains similarity to Pfam family PF01772
(Isopentenyl-diphosphate delta-isomerase), score=423.2, E=2.4e-123,
N=1 [Caenorhabditis elegans]
Length = 854
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 854
0 150 300 450 600 750
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 0.00027, P = 0.00027
Identities = 30/61 (49%), Positives = 38/61 (62%), Frame = +1
Query: 100 DAVQRRLMFEDECILVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLL 279
DA Q M E +CI VDENDR++G SK H ++ +LHRAFSVF F S +LL+
Sbjct: 642 DAQQVEYMRE-QCINVDENDRIIGGVSKREAHSSYQL----VLHRAFSVFSFTSDNKLLM 696
Query: 280 Q 282
Q
Sbjct: 697 Q 697
>gi|8134504|sp|Q9X7Q6|IDI_STRCO PROBABLE ISOPENTENYL-DIPHOSPHATE
DELTA-ISOMERASE (IPP ISOMERASE) (ISOPENTENYL PYROPHOSPHATE
ISOMERASE) >gi|7480894|pir||T35275 probable IPP isomerase -
Streptomyces coelicolor >gi|4584497|emb|CAB40700.1| (AL049587)
putative IPP isomerase [Streptomyces coelicolor A3(2)]
Length = 197
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.72, P = 0.51
Identities = 21/47 (44%), Positives = 27/47 (57%), Frame = +1
Query: 142 LVDENDRVVGHDSKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQ 282
LVDEN +G K + H + LHRAFSVFLF+ + LL+Q
Sbjct: 24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQ 65
>gi|462350|sp|P35297|HSP2_MACMU SPERM HISTONE P2 PRECURSOR (PROTAMINE P2)
>gi|479291|pir||S33336 protamine P2 - rhesus macaque
>gi|296756|emb|CAA50478.1| (X71338) Protamine P2 [Macaca mulatta]
Length = 102
Frame -2 hits (HSPs): _____________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
__________________
Annotated Domains:
PFAM protamine_P2: Sperm histone P2 1..95
PRODOM PD004204: HSP2(14) Q02097(1) Q28171(1) 1..43
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 46..101
__________________
Minus Strand HSPs:
Score = 70 (24.6 bits), Expect = 4.4, P = 0.99
Identities = 28/96 (29%), Positives = 46/96 (47%), Frame = -2
Query: 304 KYQ*RNLPEEATHTLS*TGIH*KLYAANSQLQSFPSSDNCILNHDQPHGHSHPPK--CIR 131
+Y+ R+L E + H + +H + N Q + + ++ + +++ HGHSH + C R
Sbjct: 3 RYRMRSLSERS-HEVHGQQVHGQDQGHNGQEEQGLNPEHVEV-YERTHGHSHYRRRHCSR 60
Query: 130 LRT*DGAGQRPCLHRRREGKCGPWRCEK-RRKRREREEC 17
R R +HRRR C R R +RR R C
Sbjct: 61 RRL-----HR--IHRRRHRSCRRRRRRSCRHRRRHRRGC 92
>gi|462353|sp|P35300|HSP2_PANTR SPERM HISTONE P2 PRECURSOR (PROTAMINE P2)
>gi|479286|pir||S33331 protamine P2 - chimpanzee
>gi|296075|emb|CAA51474.1| (X72968) Protamine P2 [Pan troglodytes]
Length = 102
Frame -2 hits (HSPs): _________________________________________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
__________________
Annotated Domains:
PFAM protamine_P2: Sperm histone P2 1..95
PRODOM PD004204: HSP2(14) Q02097(1) Q28171(1) 1..43
__________________
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 9.5, P = 1.0
Identities = 27/97 (27%), Positives = 45/97 (46%), Frame = -2
Query: 304 KYQ*RNLPEEATHTLS*TGIH*KLYAANSQLQSFPSSDNCILNHDQPHGHSHPPK--CIR 131
+Y+ R+ P E +H + +H + + Q + S ++ + +++ HGHSH + C R
Sbjct: 3 RYRVRS-PSEPSHEVYRQQLHGQEQGHHGQEEQGLSPEHVEV-YERTHGHSHYRRRHCSR 60
Query: 130 --LRT*DGAGQRPCLHRRREGKCGPWRCEKRRKRREREEC 17
LR R C R+R C R +R R R C
Sbjct: 61 RRLRRIHRQQHRSCRRRKRRS-CRHRRKHRRGCRTRRRTC 99
>gi|462352|sp|P35299|HSP2_PANPA SPERM HISTONE P2 PRECURSOR (PROTAMINE P2)
>gi|479287|pir||S33332 protamine P2 - pygmy chimpanzee
>gi|296767|emb|CAA50474.1| (X71334) Protamine P2 [Pan paniscus]
>gi|6979756|gb|AAF34629.1| (AF215724) protamine 2 [Pan paniscus]
>gi|6979758|gb|AAF34630.1|AF215711_1 (AF215711) protamine 2 [Pan
troglodytes]
Length = 102
Frame -2 hits (HSPs): _________________________________________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
__________________
Annotated Domains:
PFAM protamine_P2: Sperm histone P2 1..95
PRODOM PD004204: HSP2(14) Q02097(1) Q28171(1) 1..43
__________________
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 9.5, P = 1.0
Identities = 27/97 (27%), Positives = 45/97 (46%), Frame = -2
Query: 304 KYQ*RNLPEEATHTLS*TGIH*KLYAANSQLQSFPSSDNCILNHDQPHGHSHPPK--CIR 131
+Y+ R+ P E +H + +H + + Q + S ++ + +++ HGHSH + C R
Sbjct: 3 RYRVRS-PSEPSHEVYRQQLHGQEQGHHGQEEQGLSPEHVEV-YERTHGHSHYRRRHCSR 60
Query: 130 --LRT*DGAGQRPCLHRRREGKCGPWRCEKRRKRREREEC 17
LR R C R+R C R +R R R C
Sbjct: 61 RRLRRIHRQQHRSCRRRKRRS-CRHRRRHRRGCRTRRRTC 99
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.377 0.172 0.685
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.350 0.153 0.577
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.335 0.143 0.424
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.353 0.148 0.487
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.354 0.159 0.581
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.362 0.166 0.549
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 170 169 10. 75 3 12 22 0.11 34
31 0.11 37
+2 0 170 169 10. 75 3 12 22 0.11 34
31 0.11 37
+1 0 170 169 10. 75 3 12 22 0.11 34
31 0.11 37
-1 0 170 170 10. 75 3 12 22 0.11 34
31 0.11 37
-2 0 170 169 10. 75 3 12 22 0.11 34
31 0.11 37
-3 0 170 169 10. 75 3 12 22 0.11 34
31 0.11 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 48
No. of states in DFA: 594 (59 KB)
Total size of DFA: 189 KB (192 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 159.59u 1.11s 160.70t Elapsed: 00:00:34
Total cpu time: 159.60u 1.18s 160.78t Elapsed: 00:00:34
Start: Wed Feb 6 15:02:57 2002 End: Wed Feb 6 15:03:31 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000