R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 1 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7487112|pir||T13434 hypothetical protein T17A13.50 - Arabidopsis thaliana
>gi|7269821|emb|CAB79681.1| (AL161574) putative protein
[Arabidopsis thaliana]
Length = 498
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 498
0 150 300 450
Plus Strand HSPs:
Score = 246 (86.6 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 56/123 (45%), Positives = 72/123 (58%), Frame = +1
Query: 82 DHFSFIPFRKTFDEVGTGEA-STAREVVQASGSCEEVHERQRAQHVAHHQQQQHAHHH-- 252
D SF+PF K+FDEV E T + + + H Q + +HH H HHH
Sbjct: 308 DQLSFVPFMKSFDEVARRETPQTGHATCEDVMAEQHRHRHQPSSSTSHHMAHDHHHHHHQ 367
Query: 253 --QISNSAFHISRPSHPISTIISPPP-LHHTSIILDDNNSYHVSRIMLQNENFQVITTQI 423
Q + AF+IS+P+HPISTIISP LHH SI + D+N YHV RI+L NEN+Q TQ
Sbjct: 368 QQQQRHHAFNISQPTHPISTIISPSTSLHHASINILDDNPYHVHRILLPNENYQ---TQQ 424
Query: 424 PLLKHG 441
L + G
Sbjct: 425 QLRQEG 430
>gi|9049470|dbj|BAA99435.1| (AP002743) hypothetical protein [Oryza sativa]
Length = 569
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 569
0 150 300 450
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 48/133 (36%), Positives = 78/133 (58%), Frame = +1
Query: 13 SALRPGMTGFTTHHPLDIQQLK--PDHFSFIPFRKTFDEVG-TGEASTAREVVQASGSCE 183
SA G+ +++Q LK DHFSF PFRK+F+EVG +G+ + ++ G E
Sbjct: 383 SATSYSTAGYAVAAAVEMQHLKHAADHFSFAPFRKSFEEVGISGDQVHSNQL----GRSE 438
Query: 184 EVHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNNS 363
+ H Q Q H+ A + +AF ISRP++P+S I+ PP + H S++LD ++
Sbjct: 439 QQHAGQEQQP---HRPLL-ATTTAVPATAFLISRPTNPVSNIV-PPAMQHASVVLD-HDQ 492
Query: 364 YHVSRIMLQNENFQVI 411
+HV I+L ++ FQ++
Sbjct: 493 FHVPAILLHHDKFQLL 508
>gi|10176766|dbj|BAB09880.1| (AB013392) gene_id:MIK19.7~pir||T13434~similar to
unknown protein [Arabidopsis thaliana]
Length = 386
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 386
0 150 300
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 34/81 (41%), Positives = 46/81 (56%), Frame = +1
Query: 100 PFRKTFDEVGTGEASTAREVVQASGSCEEVHERQRAQHVA-HHQ-QQQHAHHHQISNSA- 270
P ++FDE GT EAS RE SG+CEEVH+ ++ HH H HHQI +
Sbjct: 266 PHTRSFDE-GTAEASKGRENQHVSGTCEEVHDGIITSSMSSHHMIHDHHNQHHQIGDRRE 324
Query: 271 FHISRPSHPISTIISPPPLHHTSI 342
FH+S S+P++ I+ H SI
Sbjct: 325 FHMSS-SYPMTPTITS---QHESI 344
>gi|12643595|sp||HUNB_DROPO_1 [Segment 1 of 2] HUNCHBACK PROTEIN
>gi|2896876|gb|AAC03264.1| (U93017) hunchback protein [Drosophila
petalopeza]
Length = 100
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 100
0 20 40 60 80
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.038, P = 0.037
Identities = 22/75 (29%), Positives = 35/75 (46%), Frame = +1
Query: 193 ERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNNSYHV 372
+++ H HH H+HH SNS + S P H S + SP P +T++ L+
Sbjct: 11 KQEPISHHLHHHHAHHSHHRHDSNSNSNASSP-HQ-SPLPSPNPPSNTNLQLEQYLKQQQ 68
Query: 373 SRIMLQNENFQVITT 417
+ LQ + Q + T
Sbjct: 69 QQQQLQQQQQQPMDT 83
>gi|12643610|sp||HUNB_DRODA_1 [Segment 1 of 2] HUNCHBACK PROTEIN
>gi|2896901|gb|AAC03274.1| (U93027) hunchback protein [Drosophila
dasycnemia]
Length = 102
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.063, P = 0.061
Identities = 19/53 (35%), Positives = 28/53 (52%), Frame = +1
Query: 193 ERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILD 351
+++ H HH H+HH SNS + S P H S + SP P HT++ L+
Sbjct: 11 KQEPISHHHHHHHAHHSHHAHDSNSNSNASSP-HQ-SPLPSPNPPSHTNLQLE 61
>gi|12643571|sp||HUNB_DROAA_1 [Segment 1 of 2] HUNCHBACK PROTEIN
>gi|2896832|gb|AAC03247.1| (U92999) hunchback protein [Drosophila
adunca]
Length = 101
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.081, P = 0.078
Identities = 17/50 (34%), Positives = 27/50 (54%), Frame = +1
Query: 202 RAQHVAHHQQQQHAHH-HQISNSAFHISRPSHPISTIISPPPLHHTSIILD 351
+ + ++HH HAHH H +S + S H S + SP P HT++ L+
Sbjct: 11 KQEPISHHHHHHHAHHSHHAHDSNSNASNSPHQ-SPLPSPNPPSHTNLQLE 60
>gi|5106561|gb|AAD39751.1|AF128626_1 (AF128626) RNA binding protein PufA
[Dictyostelium discoideum]
Length = 795
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 795
0 150 300 450 600 750
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.11, P = 0.10
Identities = 26/55 (47%), Positives = 34/55 (61%), Frame = +1
Query: 208 QHVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPP---LHH---TSIILDDNNS 363
QH HHQQQQH HHHQ + H ++ HP+ T+ S P L H T + L++NNS
Sbjct: 219 QH-HHHQQQQHHHHHQHHHQQQHHNQ--HPVVTLSSSPTSSSLSHSPSTIVTLNNNNS 273
>gi|1085142|pir||S55017 hypothetical protein 2 - fruit fly (Drosophila
melanogaster)
Length = 154
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 154
0 50 100 150
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.14, P = 0.13
Identities = 19/46 (41%), Positives = 27/46 (58%), Frame = +1
Query: 190 HERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPI--STIISPP 321
H + ++QH QQ+QH HH Q++ ++ H S S P ST SPP
Sbjct: 93 HHQSQSQHKPSRQQKQHQHHSQVAPTSHHQSSSSTPPTPSTSSSPP 138
>gi|6484403|dbj|BAA87604.1| (AB017036) fast skeletal muscle troponin T [Gallus
gallus]
Length = 68
Frame 1 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | 68
0 20 40 60
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.38, P = 0.31
Identities = 17/55 (30%), Positives = 24/55 (43%), Frame = +1
Query: 118 DEVGTGEASTAREVVQASGSCEEVHERQRAQHVAHHQQQQHA--HHHQISNSAFH 276
+EV GE E +A EE H + AHH++ HA HH + + H
Sbjct: 5 EEVEHGEEEYEEEAHEAEEVHEEAHHEEAHHEEAHHEEAHHAEAHHAEAHHEEAH 59
Score = 73 (25.7 bits), Expect = 0.49, P = 0.39
Identities = 13/40 (32%), Positives = 20/40 (50%), Frame = +1
Query: 181 EEVHERQRAQHVAHHQQQQH--AHHHQISNSAFHISRPSH 294
EE HE + AHH++ H AHH + ++ H + H
Sbjct: 16 EEAHEAEEVHEEAHHEEAHHEEAHHEEAHHAEAHHAEAHH 55
>gi|7506946|pir||T24366 hypothetical protein T02E1.3a - Caenorhabditis elegans
>gi|3879306|emb|CAB04667.1| (Z81581) Similarity in N-terminus to
Human TIS11 protein (SW:Q07352), contains similarity to Pfam
domain: PF00642 (Zinc finger C-x8-C-x5-C-x3-H type (and similar).),
Score=39.5, E-value=3.9e-10, N=2~cDNA EST EMBL:M75782 comes from
this gene~cDNA EST yk>
Length = 644
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 644
0 150 300 450 600
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.40, P = 0.33
Identities = 19/59 (32%), Positives = 30/59 (50%), Frame = +1
Query: 187 VHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNNS 363
+H ++QH H Q QQ+ HH H P HP + ++SPP + + + DD+ S
Sbjct: 394 IHHHHQSQHQLH-QHQQYLHHAAQQYRYSHQQGPQHPFAALLSPPEISESLLPPDDSFS 451
>gi|7506947|pir||T24365 hypothetical protein T02E1.3b - Caenorhabditis elegans
>gi|3879305|emb|CAB04666.1| (Z81581) contains similarity to Pfam
domain: PF00642 (Zinc finger C-x8-C-x5-C-x3-H type (and similar).),
Score=38.0, E-value=1e-09, N=2~cDNA EST yk194f9.3 comes from this
gene~cDNA EST yk194f9.5 comes from this gene~cDNA EST yk583b8.5
comes from this g>
Length = 679
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 679
0 150 300 450 600
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.43, P = 0.35
Identities = 19/59 (32%), Positives = 30/59 (50%), Frame = +1
Query: 187 VHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNNS 363
+H ++QH H Q QQ+ HH H P HP + ++SPP + + + DD+ S
Sbjct: 429 IHHHHQSQHQLH-QHQQYLHHAAQQYRYSHQQGPQHPFAALLSPPEISESLLPPDDSFS 486
>gi|12643607|sp||HUNB_DROTA_1 [Segment 1 of 2] HUNCHBACK PROTEIN
>gi|2896896|gb|AAC03272.1| (U93025) hunchback protein [Drosophila
tanythrix]
Length = 97
Frame 1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 97
0 20 40 60 80
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 0.63, P = 0.47
Identities = 16/50 (32%), Positives = 28/50 (56%), Frame = +1
Query: 202 RAQHVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILD 351
+ + ++HH HAHH ++S + S P H S + SP P +T++ L+
Sbjct: 11 KQEPISHHHHHHHAHHSHHADSNSNASSP-HQ-SPLPSPNPPSNTNLQLE 58
>gi|12004025|gb|AAG43852.1|AF213985_1 (AF213985) caudal homeobox protein
[Sacculina carcini]
Length = 216
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.76, P = 0.53
Identities = 17/35 (48%), Positives = 19/35 (54%), Frame = +1
Query: 190 HERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSH 294
H Q QH+ HH QH HHHQ + S H PSH
Sbjct: 129 HSLQHHQHLQHHDVIQHQHHHQRNISGLH--HPSH 161
Score = 81 (28.5 bits), Expect = 6.7, P = 1.0
Identities = 19/58 (32%), Positives = 28/58 (48%), Frame = +1
Query: 190 HERQRAQHVAHHQQQQHAHHHQISNSAFH-------ISRPSHP-ISTIISPPPLHHTS 339
H Q QH+ HH QH HHHQ + S H + + +HP ++ + + P H S
Sbjct: 129 HSLQHHQHLQHHDVIQHQHHHQRNISGLHHPSHSSVLHQAAHPSVAALATLHPGHLAS 186
>gi|129172|sp|P23488|OPAP_DROME DROMSOPA PROTEIN >gi|103500|pir||S17518 opa
protein - fruit fly (Drosophila sp.) >gi|8305|emb|CAA39846.1|
(X56491) dromsopa [Drosophila melanogaster]
Length = 69
Frame 1 hits (HSPs): _________________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | | 69
0 20 40 60
__________________
Annotated Domains:
PRODOM PD046431: OPAP_DROME 1..30
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 32..60
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 1.0, P = 0.65
Identities = 15/37 (40%), Positives = 21/37 (56%), Frame = +1
Query: 181 EEVHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPS 291
++ H +Q+ QH QQQQH HHQ + H+ R S
Sbjct: 32 QQQHHQQQQQH--QQQQQQHHQHHQ-HHQLQHLKRSS 65
>gi|12643598|sp||HUNB_SCAAL_1 [Segment 1 of 2] HUNCHBACK PROTEIN
>gi|2896881|gb|AAC03266.1| (U93019) hunchback protein [Scaptomyza
albovittata]
Length = 80
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 1.3, P = 0.74
Identities = 17/47 (36%), Positives = 23/47 (48%), Frame = +1
Query: 211 HVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILD 351
H HH H HHH SNS + S P S + SP P +++ L+
Sbjct: 17 HHHHHSHHSHGHHHSNSNS--NASSPRQ--SPLPSPNPPSSSNLHLE 59
>gi|5359741|gb|AAD42790.1| (AF139119) fast troponin T isoform [Coturnix
japonica]
Length = 135
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 135
0 50 100
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 1.6, P = 0.79
Identities = 16/49 (32%), Positives = 23/49 (46%), Frame = +1
Query: 184 EVHERQRAQHVAHHQQQQH--AHHHQISNSAFHISRPSHPISTIISPPPLH 330
E HE + Q AHH++ H HH + + H P +PPP+H
Sbjct: 16 EAHETEEVQEEAHHEEAHHEEVHHEEAHHEEAHAEEVHEP-----APPPVH 61
>gi|7321824|gb|AAC37219.2| (L31349) out at first [Drosophila melanogaster]
Length = 487
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 1.7, P = 0.82
Identities = 19/46 (41%), Positives = 27/46 (58%), Frame = +1
Query: 190 HERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPI--STIISPP 321
H + ++QH QQ+QH HH Q++ ++ H S S P ST SPP
Sbjct: 426 HHQSQSQHKPSRQQKQHQHHSQVAPTSHHQSSSSTPPTPSTSSSPP 471
>gi|12643516|sp|Q9NLA6|OAF_DROME OUT AT FIRST PROTEIN [CONTAINS: OUT AT FIRST
SHORT PROTEIN]
Length = 487
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 487
0 150 300 450
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 1.7, P = 0.82
Identities = 19/46 (41%), Positives = 27/46 (58%), Frame = +1
Query: 190 HERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPI--STIISPP 321
H + ++QH QQ+QH HH Q++ ++ H S S P ST SPP
Sbjct: 426 HHQSQSQHKPSRQQKQHQHHSQVAPTSHHQSSSSTPPTPSTSSSPP 471
>gi|1296429|gb|AAB08703.1| (L77967) small proline-rich protein with paired
repeat [Ovis aries]
Length = 77
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.7, P = 0.82
Identities = 16/37 (43%), Positives = 17/37 (45%), Frame = +1
Query: 220 HHQQQQHAHHHQISNSAFHISRPSHPISTIISPPPLH 330
H QQQQH HHHQ P HP + PP H
Sbjct: 14 HPQQQQHHHHHQCKE-------PCHPPPKVC-PPKCH 42
>gi|7299916|gb|AAF55090.1| (AE003706) CG7552 gene product [Drosophila
melanogaster]
Length = 88
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 88
0 20 40 60 80
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.7, P = 0.82
Identities = 13/24 (54%), Positives = 16/24 (66%), Frame = +1
Query: 193 ERQRAQHVAHHQQQQ---HAHHHQ 255
++Q+ QH HHQQQQ H HH Q
Sbjct: 23 QQQQQQHHHHHQQQQQQQHTHHQQ 46
>gi|7301661|gb|AAF56777.1| (AE003764) CG12852 gene product [Drosophila
melanogaster]
Length = 114
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 114
0 50 100
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 2.2, P = 0.89
Identities = 20/49 (40%), Positives = 27/49 (55%), Frame = +1
Query: 163 QASGSC--EEVHERQRAQHVAHHQ-QQQHAHH-HQISNSAFH-ISRPSH 294
Q SG E ++ Q+ Q + HHQ QQQH+H+ HQ H + PSH
Sbjct: 29 QTSGEYVKEPPYQTQQLQQLQHHQLQQQHSHNQHQQQQHYIHQLYYPSH 77
>gi|2921775|gb|AAC70917.1| (AF044922) troponin T variant TnTx7-e16 [Gallus
gallus]
Length = 287
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | 287
0 50 100 150 200 250
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 2.3, P = 0.90
Identities = 28/107 (26%), Positives = 44/107 (41%), Frame = +1
Query: 118 DEVGTGEASTAREVVQASGSCEEVHERQRAQHVAHHQQQQHA--HHHQISNSAFHISRPS 291
+EV GEA A EV + + EE H + AHH + HA HH + A + P+
Sbjct: 5 EEVEHGEAHEAEEVHEEAHH-EEAHHEEAHHEEAHHAEAHHAEAHHEEAHAHAEEVHEPA 63
Query: 292 HPISTIISPPPLHHTSIILDDNNSYHVSRIMLQNENFQVITTQIPLLKH 438
P P + T+ + + I + +N +I Q + H
Sbjct: 64 PPPE---EKPRIKLTAPKIPEGEKVDFDDIQKKRQNKDLIELQALIDSH 109
>gi|7428|emb|CAA41117.1| (X58114) testis-specific RNA [Drosophila hydei]
Length = 49
Frame -1 hits (HSPs): _________
Frame -2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 49
0 20 40
Minus Strand HSPs:
Score = 42 (14.8 bits), Expect = 2.4, Sum P(2) = 0.91
Identities = 9/22 (40%), Positives = 10/22 (45%), Frame = -2
Query: 239 CC-----CC***ATCCARCRSC 189
CC CC +CC C SC
Sbjct: 9 CCGPCGGCCGPCYSCCGPCYSC 30
Score = 41 (14.4 bits), Expect = 2.4, Sum P(2) = 0.91
Identities = 6/9 (66%), Positives = 7/9 (77%), Frame = -1
Query: 168 CLHYFSCCG 142
C Y+SCCG
Sbjct: 31 CGPYYSCCG 39
>gi|3928813|gb|AAC79689.1| (AC005013) cAMP response element-binding protein
CRE-BPa [Homo sapiens]
Length = 274
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 274
0 50 100 150 200 250
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 2.7, P = 0.93
Identities = 22/47 (46%), Positives = 25/47 (53%), Frame = +1
Query: 190 HERQRAQHVAH---HQQQQHAHHHQISNSAFHISRPSHPISTIISP-PPLH 330
H+ Q H H H QQ H HHH S+S H +HP SP PPLH
Sbjct: 58 HQHQHPAHHPHPQPHHQQNHPHHH--SHSHLH----AHPAHHQTSPHPPLH 102
>gi|6753232 ref|NP_033913.1| calcium channel, voltage-dependent, T type, alpha
1G subunit [Mus musculus] >gi|4584688|emb|CAB40793.1| (AJ012569)
voltage-gated calcium channel, alpha-1-G subunit [Mus musculus]
Length = 2295
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 2295
0 500 1000 1500 2000
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 2.8, P = 0.94
Identities = 17/46 (36%), Positives = 21/46 (45%), Frame = +1
Query: 163 QASGSCEEVHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPI 300
Q SGSC H R H+ HH H HH+ + N + R S I
Sbjct: 477 QPSGSCSRSHRRLSVHHLVHHHHHHH-HHYHLGNGTLRVPRASPEI 521
>gi|2498466|sp|Q48251|HPN_HELPY HISTIDINE-RICH, METAL BINDING POLYPEPTIDE
>gi|7465222|pir||C64698 probable histidine-rich metal-binding
protein - Helicobacter pylori >gi|836667|gb|AAA85859.1| (U26361)
Hpn [Helicobacter pylori] >gi|2314604|gb|AAD08471.1| (AE000643)
histidine-rich, metal binding polypeptide (hpn) [Helicobacter
pylori 26695] >gi|4155931|gb|AAD06898.1| (AE001555) putative
histidine-rich metal-binding protein [Helicobacter pylori J99]
Length = 60
Frame 1 hits (HSPs): ____________________________________
Annotated Domains: ____________ _____ __________________
__________________________________________________
Database sequence: | | | | 60
0 20 40
__________________
Annotated Domains:
Entrez Domain: POLY-HIS. 11..24
Entrez Domain: POLY-HIS. 28..33
Entrez Domain: 2 X 5 AA REPEATS OF E-E-G-C-C. 38..55
Entrez Repetitive region: 1. 38..42
Entrez Repetitive region: 2. 51..55
PRODOM PD044471: HPN_HELPY 40..58
__________________
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 2.9, P = 0.94
Identities = 14/43 (32%), Positives = 14/43 (32%), Frame = +1
Query: 208 QHVAHHQQQQHAHHHQISNSAFHISR-PSHPISTIISPPPLHH 333
QH HH H HHH H SH S HH
Sbjct: 7 QHGGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHH 49
>gi|5359755|gb|AAD42797.1| (AF139126) fast troponin T isoform [Coturnix
japonica]
Length = 119
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 119
0 50 100
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 3.4, P = 0.97
Identities = 19/87 (21%), Positives = 32/87 (36%), Frame = +1
Query: 184 EVHERQRAQHVAHHQQQQH--AHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDN 357
E HE + Q AHH++ H HH + + H P P + T+ + +
Sbjct: 10 EAHETEEVQEEAHHEEAHHEEVHHEEAHHEEAHAEEVHEPAPPPEEKPRIKLTAPKIPEG 69
Query: 358 NSYHVSRIMLQNENFQVITTQIPLLKH 438
I + +N +I Q + H
Sbjct: 70 EKVDFDDIQKKRQNKDLIELQALIDSH 96
>gi|7293625|gb|AAF48997.1| (AE003512) CG14223 gene product [Drosophila
melanogaster]
Length = 581
Frame 2 hits (HSPs): ___
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 581
0 150 300 450
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 3.6, Sum P(2) = 0.97
Identities = 13/21 (61%), Positives = 17/21 (80%), Frame = +1
Query: 190 HERQRAQHVAHHQQQQHAHHH 252
H++Q+ QH HHQQQQH +HH
Sbjct: 204 HQQQQQQHQHHHQQQQHHNHH 224
Score = 44 (15.5 bits), Expect = 3.6, Sum P(2) = 0.97
Identities = 9/17 (52%), Positives = 12/17 (70%), Frame = +2
Query: 275 ISVGHHIPSLPLSLPLP 325
IS G +LP+S+PLP
Sbjct: 451 ISAGQLPATLPVSMPLP 467
>gi|5921700|sp|O54898|CCAG_RAT VOLTAGE-DEPENDENT T-TYPE CALCIUM CHANNEL
ALPHA-1G SUBUNIT >gi|7514003|pir||T09053 low voltage-activated,
T-type calcium channel alpha chain - rat >gi|3786351|gb|AAC67372.1|
(AF027984) low voltage-activated, T-type calcium channel alpha
subunit; alpha-1G calcium channel alpha subunit [Rattus norvegicus]
>gi|11422004|gb|AAG35186.2|AF290212_1 (AF290212) calcium channel
alpha-1-G subunit [Rattus norvegicus]
Length = 2254
Frame 1 hits (HSPs): __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 2254
0 500 1000 1500 2000
__________________
Annotated Domains:
Entrez Repetitive region: I. 68..398
Entrez Repetitive region: II. 730..968
Entrez Repetitive region: III. 1242..1519
Entrez Repetitive region: IV. 1564..1822
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..80
Entrez Transmembrane region: S1 OF REPEAT I. 81..101
Entrez Domain: EXTRACELLULAR (POTENTIAL). 102..119
Entrez Transmembrane region: S2 OF REPEAT I (PO 120..141
Entrez Domain: CYTOPLASMIC (POTENTIAL). 142..150
Entrez Transmembrane region: S3 OF REPEAT I. 151..170
Entrez Domain: EXTRACELLULAR (POTENTIAL). 171..175
Entrez Transmembrane region: S4 OF REPEAT I. 176..193
Entrez Domain: CYTOPLASMIC (POTENTIAL). 194..213
Entrez Transmembrane region: S5 OF REPEAT I (PO 214..234
Entrez Domain: EXTRACELLULAR (POTENTIAL). 235..370
Entrez Transmembrane region: S6 OF REPEAT I. 371..395
Entrez Domain: CYTOPLASMIC (POTENTIAL). 396..744
Entrez Transmembrane region: S1 OF REPEAT II (P 745..765
Entrez Domain: EXTRACELLULAR (POTENTIAL). 766..778
Entrez Transmembrane region: S2 OF REPEAT II (P 779..800
Entrez Domain: CYTOPLASMIC (POTENTIAL). 801..806
Entrez Transmembrane region: S3 OF REPEAT II (P 807..825
Entrez Domain: EXTRACELLULAR (POTENTIAL). 826..833
Entrez Transmembrane region: S4 OF REPEAT II (P 834..857
Entrez Domain: CYTOPLASMIC (POTENTIAL). 858..868
Entrez Transmembrane region: S5 OF REPEAT II (P 869..889
Entrez Domain: EXTRACELLULAR (POTENTIAL). 890..940
Entrez Transmembrane region: S6 OF REPEAT II (P 941..965
Entrez Domain: CYTOPLASMIC (POTENTIAL). 966..1251
Entrez Transmembrane region: S1 OF REPEAT III ( 1252..1274
Entrez Domain: EXTRACELLULAR (POTENTIAL). 1275..1292
Entrez Transmembrane region: S2 OF REPEAT III ( 1293..1313
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1314..1323
Entrez Transmembrane region: S3 OF REPEAT III ( 1324..1343
Entrez Domain: EXTRACELLULAR (POTENTIAL). 1344..1357
Entrez Transmembrane region: S4 OF REPEAT III ( 1358..1379
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1380..1389
Entrez Transmembrane region: S5 OF REPEAT III ( 1390..1413
Entrez Domain: EXTRACELLULAR (POTENTIAL). 1414..1490
Entrez Transmembrane region: S6 OF REPEAT III ( 1491..1516
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1517..1578
Entrez Transmembrane region: S1 OF REPEAT IV (P 1579..1599
Entrez Domain: EXTRACELLULAR (POTENTIAL). 1600..1613
Entrez Transmembrane region: S2 OF REPEAT IV (P 1614..1635
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1636..1642
Entrez Transmembrane region: S3 OF REPEAT IV (P 1643..1661
Entrez Domain: EXTRACELLULAR (POTENTIAL). 1662..1675
Entrez Transmembrane region: S4 OF REPEAT IV (P 1676..1699
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1700..1713
Entrez Transmembrane region: S5 OF REPEAT IV (P 1714..1734
Entrez Domain: EXTRACELLULAR (POTENTIAL). 1735..1794
Entrez Transmembrane region: S6 OF REPEAT IV (P 1795..1822
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1823..2058
Entrez Domain: POLY-GLY. 290..295
Entrez Domain: POLY-HIS. 496..506
Entrez Domain: POLY-GLU. 1527..1530
Entrez other site: CALCIUM ION SELECTIVITY AND 354
Entrez other site: CALCIUM ION SELECTIVITY AND 924
Entrez other site: CALCIUM ION SELECTIVITY AND 1465
Entrez other site: CALCIUM ION SELECTIVITY AND 1770
Entrez glycosylation site: POTENTIAL. 173
Entrez glycosylation site: POTENTIAL. 246
Entrez glycosylation site: POTENTIAL. 306
Entrez glycosylation site: POTENTIAL. 310
Entrez glycosylation site: POTENTIAL. 322
Entrez glycosylation site: POTENTIAL. 1427
Entrez glycosylation site: POTENTIAL. 1430
Entrez glycosylation site: POTENTIAL. 1666
PFAM ion_trans: Ion transport protein 77..394
PFAM ion_trans: Ion transport protein 740..964
PFAM ion_trans: Ion transport protein 1251..1515
PFAM ion_trans: Ion transport protein 1575..1818
PRODOM PD189948: CCAG(1) O94770(1) 1..49
PRODOM PD085893: 51..81
PRODOM PD000032: CCAA(20) CCAB(20) CCAE(20) 83..199
PRODOM PD000091: CCAA(25) CCAB(25) CCAD(25) 204..234
PRODOM PD085912: 255..325
PRODOM PD000091: CCAA(25) CCAB(25) CCAD(25) 328..360
PRODOM PD001530: CCAA(5) CCAB(5) CCAE(5) 362..411
PRODOM PD133921: CCAG(3) O94770(2) Q9Z0Y8(2) 419..489
PRODOM PD133921: CCAG(3) O94770(2) Q9Z0Y8(2) 508..533
PRODOM PD133921: CCAG(3) O94770(2) Q9Z0Y8(2) 549..584
PRODOM PD187402: CCAG(1) O94770(1) CCAH(1) 586..741
PRODOM PD000032: CCAA(20) CCAB(20) CCAE(20) 743..848
PRODOM PD000091: CCAA(25) CCAB(25) CCAD(25) 854..933
PRODOM PD106619: 935..1032
PRODOM PD210248: CCAG_RAT 1034..1086
PRODOM PD125952: CCAG(1) O94770(1) CCAH(1) 1088..1253
PRODOM PD000032: CCAA(20) CCAB(20) CCAE(20) 1255..1370
PRODOM PD000091: CCAA(25) CCAB(25) CCAD(25) 1372..1483
PRODOM PD186968: 1485..1525
PRODOM PD161408: CCAG_RAT 1548..1578
PRODOM PD000032: CCAA(20) CCAB(20) CCAE(20) 1580..1693
PRODOM PD000091: CCAA(25) CCAB(25) CCAD(25) 1696..1786
PRODOM PD186969: 1789..1825
PRODOM PD206255: CCAG_RAT 1843..1896
PRODOM PD188099: CCAG(1) CCAH(1) O95802(1) 1898..2036
PRODOM PD210156: CCAG_RAT 2038..2074
PRODOM PD139877: CCAG(1) O95802(1) 2076..2234
__________________
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 3.6, P = 0.97
Identities = 17/46 (36%), Positives = 21/46 (45%), Frame = +1
Query: 163 QASGSCEEVHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPI 300
Q SGSC H R H+ HH H HH+ + N + R S I
Sbjct: 477 QPSGSCTRSHRRLSVHHLVHHHHHHH-HHYHLGNGTLRVPRASPEI 521
>gi|629324|pir||S48621 hypothetical protein - Mycoplasma capricolum (fragment)
Length = 80
Frame -1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 3.7, P = 0.97
Identities = 13/39 (33%), Positives = 20/39 (51%), Frame = -1
Query: 627 NKFIFNFFFYGQAHDINSYAIKTFSQCTLNYFSIMTTIW 511
N F+FNFF+ I S +F+ ++NYF + W
Sbjct: 22 NXFLFNFFYTFIHRTIYSCXNCSFNXSSINYFYFLLNFW 60
>gi|4633670|gb|AAD26858.1|AF125161_1 (AF125161) T-type calcium channel isoform
[Rattus norvegicus]
Length = 2288
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 2288
0 500 1000 1500 2000
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 3.7, P = 0.97
Identities = 17/46 (36%), Positives = 21/46 (45%), Frame = +1
Query: 163 QASGSCEEVHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPI 300
Q SGSC H R H+ HH H HH+ + N + R S I
Sbjct: 477 QPSGSCTRSHRRLSVHHLVHHHHHHH-HHYHLGNGTLRVPRASPEI 521
>gi|2231301|gb|AAB61993.1| (U73846) testis-specific RNP-type RNA binding
protein [Drosophila melanogaster]
Length = 808
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 808
0 150 300 450 600 750
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 4.3, P = 0.99
Identities = 24/67 (35%), Positives = 31/67 (46%), Frame = +1
Query: 121 EVGTGEASTAREVVQASGSCEE--VHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSH 294
E G E +++S S + H Q +H A HQQQQ HHHQ ++ H
Sbjct: 81 EFGLAEVDAKLTQLKSSHSLQHHHSHHHQLQRHTALHQQQQQLHHHQPHHNHHHHHPYQR 140
Query: 295 PISTIISPP 321
P T SPP
Sbjct: 141 PRPT--SPP 147
>gi|2134860|pir||I78877 cAMP responsive element binding protein - human
>gi|181054|gb|AAC37527.1| (L05912) cAMP responsive element binding
protein [Homo sapiens]
Length = 369
Frame 1 hits (HSPs): _______
Annotated Domains: ________
__________________________________________________
Database sequence: | | | | 369
0 150 300
__________________
Annotated Domains:
PROSITE BZIP_BASIC: bZIP transcription factors b 241..256
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 264..285
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 271..292
__________________
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 4.4, P = 0.99
Identities = 22/47 (46%), Positives = 25/47 (53%), Frame = +1
Query: 190 HERQRAQHVAH---HQQQQHAHHHQISNSAFHISRPSHPISTIISP-PPLH 330
H+ Q H H H QQ H HHH S+S H +HP SP PPLH
Sbjct: 153 HQHQHPAHHPHPQPHHQQNHPHHH--SHSHLH----AHPAHHQTSPHPPLH 197
>gi|7290441|gb|AAF45896.1| (AE003429) CG12632 gene product [Drosophila
melanogaster]
Length = 238
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | 238
0 50 100 150 200
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 4.7, P = 0.99
Identities = 31/109 (28%), Positives = 47/109 (43%), Frame = +1
Query: 115 FDEVGTGEASTAREVVQASGSCEEVHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSH 294
+DE A+ +E++Q + Q+ Q QQQQH HHH N H
Sbjct: 125 YDEAAVAVATLTQEMMQTNSGGGSTETSQQQQ-----QQQQHHHHHSHQNHQNHNQHHQR 179
Query: 295 --PISTIISPPPLHHTS-IILDDNNSYHVSRIMLQNENFQVITTQIPLLKHG 441
P + ++S L T+ IL N H + +Q+ N + T LL +G
Sbjct: 180 LLPFNDLLSDDELRKTAGQIL---NGIH-REVEVQSVNSIISTYHDVLLDNG 227
>gi|10728735|gb|AAF53180.2| (AE003635) aret gene product [Drosophila
melanogaster]
Length = 238
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 238
0 50 100 150 200
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 4.7, P = 0.99
Identities = 23/67 (34%), Positives = 31/67 (46%), Frame = +1
Query: 121 EVGTGEASTAREVVQASGSCEE--VHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSH 294
E G E +++S S + H Q +H A +QQQQ HHHQ ++ H
Sbjct: 81 EFGLAEVDAKLTQLKSSHSLQHHHSHHHQLQRHTALNQQQQQLHHHQPHHNHHHHHPYQR 140
Query: 295 PISTIISPP 321
P T SPP
Sbjct: 141 PRPT--SPP 147
>gi|5359745|gb|AAD42792.1| (AF139121) fast troponin T isoform [Coturnix
japonica]
Length = 125
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 125
0 50 100
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 4.7, P = 0.99
Identities = 19/87 (21%), Positives = 32/87 (36%), Frame = +1
Query: 184 EVHERQRAQHVAHHQQQQH--AHHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDN 357
E HE + Q AHH++ H HH + + H P P + T+ + +
Sbjct: 16 EAHETEEVQEEAHHEEAHHEEVHHEEAHHEEAHAEEVHEPAPPPEEKPRIKLTAPKIPEG 75
Query: 358 NSYHVSRIMLQNENFQVITTQIPLLKH 438
I + +N +I Q + H
Sbjct: 76 EKVDFDDIQKKRQNKDLIELQALIDSH 102
>gi|7291971|gb|AAF47387.1| (AE003468) CG13885 gene product [Drosophila
melanogaster]
Length = 71
Frame 1 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 4.8, P = 0.99
Identities = 14/33 (42%), Positives = 17/33 (51%), Frame = +1
Query: 205 AQHVAHHQQQQ--HAHHHQISNSAFHISRPSHP 297
A HV +H H+HHH S+S H SHP
Sbjct: 13 AAHVQNHSMHHPIHSHHHHHSHSHPHPHPHSHP 45
>gi|7107412|gb|AAF36404.1|AF231987_1 (AF231987) LIM domain protein
[Dictyostelium discoideum]
Length = 260
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 5.5, P = 1.0
Identities = 24/69 (34%), Positives = 35/69 (50%), Frame = +1
Query: 205 AQHVAH-HQQQQHAHHHQISNSAF-HISRPSHPISTIISPPPLHHTSIILDDNNSYHVSR 378
A + H HQ QQH H HQ +A HI + S +PPP+ H + +NS + S
Sbjct: 15 APEIQHQHQHQQHQHQHQQKTTATNHIHKEQD--SHKPNPPPISHQN----SSNSLNKSP 68
Query: 379 IMLQNENFQVI 411
L EN +++
Sbjct: 69 RKLDGENGELV 79
>gi|7295347|gb|AAF50665.1| (AE003563) CG13300 gene product [Drosophila
melanogaster]
Length = 388
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 388
0 150 300
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 6.1, P = 1.0
Identities = 28/96 (29%), Positives = 43/96 (44%), Frame = +1
Query: 10 NSALRPGMTGFTTHHPLD-IQQLKPDHFSFIPFRKTFDEVGTGEASTAREVVQASGSCEE 186
N+ LR + T HP D I+ L+P +P + +G AS A + ++
Sbjct: 232 NNHLR--RSNIYTAHPADSIRGLQPLPV-VLPLPLSLPHPPSGGASPASSSTTPPATQQQ 288
Query: 187 VHERQRAQHVAH-HQQQQHAHHHQISNSAFHISRPSHP 297
H+ + Q H +QQQQH HH + H P +P
Sbjct: 289 QHQPLQQQQYFHPYQQQQHVHHSHTHHHHTHHHVPLYP 326
>gi|2314605|gb|AAD08472.1| (AE000643) histidine and glutamine-rich protein
[Helicobacter pylori 26695]
Length = 72
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 6.2, P = 1.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Frame = +1
Query: 190 HERQRAQHV-AHHQQQQHAHHHQISNSAFH 276
HE+Q+ Q + H HAHHH H
Sbjct: 4 HEQQQQQQANSQHHHHHHAHHHHYYGGEHH 33
>gi|7464107|pir||H64698 histidine and glutamine-rich protein - Helicobacter
pylori (strain 26695)
Length = 57
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 6.2, P = 1.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Frame = +1
Query: 190 HERQRAQHV-AHHQQQQHAHHHQISNSAFH 276
HE+Q+ Q + H HAHHH H
Sbjct: 4 HEQQQQQQANSQHHHHHHAHHHHYYGGEHH 33
>gi|2134861|pir||I78878 cAMP responsive element binding protein - human
>gi|181056|gb|AAC37526.1| (L05913) cAMP responsive element binding
protein [Homo sapiens]
Length = 475
Frame 1 hits (HSPs): _____
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | | 475
0 150 300 450
__________________
Annotated Domains:
PROSITE BZIP_BASIC: bZIP transcription factors b 347..362
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 370..391
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 377..398
__________________
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 6.2, P = 1.0
Identities = 22/47 (46%), Positives = 25/47 (53%), Frame = +1
Query: 190 HERQRAQHVAH---HQQQQHAHHHQISNSAFHISRPSHPISTIISP-PPLH 330
H+ Q H H H QQ H HHH S+S H +HP SP PPLH
Sbjct: 259 HQHQHPAHHPHPQPHHQQNHPHHH--SHSHLH----AHPAHHQTSPHPPLH 303
>gi|4758500 ref|NP_004895.1| cAMP response element-binding protein CRE-BPa
[Homo sapiens] >gi|181052|gb|AAC37525.1| (L05911) cAMP responsive
element binding protein [Homo sapiens]
Length = 501
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 501
0 150 300 450
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 6.7, P = 1.0
Identities = 22/47 (46%), Positives = 25/47 (53%), Frame = +1
Query: 190 HERQRAQHVAH---HQQQQHAHHHQISNSAFHISRPSHPISTIISP-PPLH 330
H+ Q H H H QQ H HHH S+S H +HP SP PPLH
Sbjct: 285 HQHQHPAHHPHPQPHHQQNHPHHH--SHSHLH----AHPAHHQTSPHPPLH 329
>gi|12733360 ref|XP_004938.2| cAMP response element-binding protein CRE-BPa
[Homo sapiens]
Length = 501
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 501
0 150 300 450
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 6.7, P = 1.0
Identities = 22/47 (46%), Positives = 25/47 (53%), Frame = +1
Query: 190 HERQRAQHVAH---HQQQQHAHHHQISNSAFHISRPSHPISTIISP-PPLH 330
H+ Q H H H QQ H HHH S+S H +HP SP PPLH
Sbjct: 285 HQHQHPAHHPHPQPHHQQNHPHHH--SHSHLH----AHPAHHQTSPHPPLH 329
>gi|422795|pir||A45477 cAMP response element-binding protein CRE-BPa - human
>gi|181050|gb|AAA52072.1| (L05515) cAMP response element-binding
protein [Homo sapiens]
Length = 508
Frame 1 hits (HSPs): _____
Annotated Domains: _________________ ____________________
__________________________________________________
Database sequence: | | | | | 508
0 150 300 450
__________________
Annotated Domains:
DOMO DM00002: ZINCFINGER,C2H2TYPE,DOMAIN 5..38
DOMO DM03989: CAMPRESPONSEELEMENT-BINDINGPROT 40..167
DOMO DM00107: BZIPTRANSCRIPTIONFACTORSBASICDO 309..444
DOMO DM04956: CAMPRESPONSEELEMENT-BINDINGPROT 446..508
Entrez domain: fos/jun DNA-binding domain homol 370..410
PROSITE BZIP_BASIC: bZIP transcription factors b 380..395
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 403..424
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 410..431
PROSITE ZINC_FINGER_C2H2: Zinc finger, C2H2 type 18..40
__________________
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 6.8, P = 1.0
Identities = 22/47 (46%), Positives = 25/47 (53%), Frame = +1
Query: 190 HERQRAQHVAH---HQQQQHAHHHQISNSAFHISRPSHPISTIISP-PPLH 330
H+ Q H H H QQ H HHH S+S H +HP SP PPLH
Sbjct: 292 HQHQHPAHHPHPQPHHQQNHPHHH--SHSHLH----AHPAHHQTSPHPPLH 336
>gi|12643601|sp||HUNB_DROSL_1 [Segment 1 of 2] HUNCHBACK PROTEIN
>gi|2896886|gb|AAC03268.1| (U93021) hunchback protein [Drosophila
silvestris]
Length = 102
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 7.3, P = 1.0
Identities = 20/53 (37%), Positives = 30/53 (56%), Frame = +1
Query: 202 RAQHVAHHQQQQHAHH--HQI---SNSAFHISRPSHPISTIISPPPLHHTSIILD 351
+ + ++HH HAHH HQ SNS + S P H S + SP P +T++ L+
Sbjct: 11 KQEPISHHHHHHHAHHSYHQHPHDSNSNSNASSP-HQ-SPLPSPNPPSNTNLQLE 63
>gi|4566516|gb|AAD23383.1|AF108140_1 (AF108140) gamete-specific homeodomain
protein GSP1 [Chlamydomonas reinhardtii]
Length = 1033
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | | 1033
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 8.5, Sum P(2) = 1.0
Identities = 20/55 (36%), Positives = 26/55 (47%), Frame = +1
Query: 169 SGSCEEVHERQRA-QHVAHHQQQQHA------H-HHQISNSAF----HISRPSHP 297
+G+ H+ Q QH HHQQ QH H HHQ + +A H +P HP
Sbjct: 131 AGTYPAQHQHQHQHQHQQHHQQHQHVVPAAVGHSHHQAATAAAAHAPHYHQPQHP 185
Score = 57 (20.1 bits), Expect = 8.5, Sum P(2) = 1.0
Identities = 14/42 (33%), Positives = 19/42 (45%), Frame = +3
Query: 297 HLYHYLSPSPPPHFHHSR*QQLLPCL*NNAPKRKLPGNHHSN 422
H +H H H QQ +P ++A R LP NH S+
Sbjct: 293 HQHHQHHHQHHQHHHQHHHQQHVPAGAHHAAARPLPPNHQSH 334
>gi|7331212|gb|AAF60324.1|AF236639_1 (AF236639) alpha1G T-type calcium channel
subunit [Bos taurus]
Length = 342
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 342
0 150 300
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 8.6, P = 1.0
Identities = 17/46 (36%), Positives = 20/46 (43%), Frame = +1
Query: 163 QASGSCEEVHERQRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPI 300
Q SG C H R H+ HH H H+H + N RPS I
Sbjct: 79 QPSGGCPRPHRRPSVHHLMHHHH--HPHYH-LGNGTLRAPRPSPQI 121
>gi|12643586|sp||HUNB_DROLI_1 [Segment 1 of 2] HUNCHBACK PROTEIN
>gi|2896856|gb|AAC03256.1| (U93009) hunchback protein [Drosophila
lineosetae]
Length = 104
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | | 104
0 20 40 60 80 100
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 9.4, P = 1.0
Identities = 20/53 (37%), Positives = 30/53 (56%), Frame = +1
Query: 202 RAQHVAHHQQQQHAHH--HQI---SNSAFHISRPSHPISTIISPPPLHHTSIILD 351
+ + ++HH HAHH HQ SNS + S P H S + SP P +T++ L+
Sbjct: 11 KQEPISHHHHHHHAHHSHHQHPHDSNSNSNASSP-HQ-SPLPSPNPPSNTNLQLE 63
>gi|7290593|gb|AAF46043.1| (AE003434) CG15781 gene product [Drosophila
melanogaster]
Length = 198
Frame 3 hits (HSPs): __________
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 9.5, Sum P(2) = 1.0
Identities = 17/42 (40%), Positives = 18/42 (42%), Frame = +1
Query: 199 QRAQHVAHHQQQQHAHHHQISNSAFHISRPSHPISTIISPPP 324
Q A V HH Q QH HH H P HP + PPP
Sbjct: 131 QLAAAVHHHHQHQHQHHPH------H--HPHHPHGAVGGPPP 164
Score = 44 (15.5 bits), Expect = 9.5, Sum P(2) = 1.0
Identities = 13/35 (37%), Positives = 13/35 (37%), Frame = +3
Query: 318 PSPPPHFHHSR*QQLLPCL*NNAPKRKLPGNHHSN 422
P PPP HH P L P NH SN
Sbjct: 163 PPPPPMQHHHPHHPHHPLLHAQGKPMSPPANH-SN 196
WARNING: HSPs involving 1 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.377 0.168 0.657
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.363 0.163 0.537
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.329 0.140 0.425
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.157 0.542
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.381 0.173 0.692
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.376 0.173 0.699
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 218 216 10. 77 3 12 22 0.10 35
32 0.12 38
+2 0 218 215 10. 77 3 12 22 0.10 35
32 0.11 38
+1 0 219 218 10. 77 3 12 22 0.10 35
32 0.12 38
-1 0 219 216 10. 77 3 12 22 0.10 35
32 0.12 38
-2 0 218 215 10. 77 3 12 22 0.10 35
32 0.11 38
-3 0 218 216 10. 77 3 12 22 0.10 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 51
No. of states in DFA: 597 (59 KB)
Total size of DFA: 222 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 203.89u 1.09s 204.98t Elapsed: 00:00:38
Total cpu time: 203.95u 1.12s 205.07t Elapsed: 00:00:38
Start: Wed Jan 16 16:52:26 2002 End: Wed Jan 16 16:53:04 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000