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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs9941077          
refSNP ID: rs9941077
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:T
Clinical Association:unknown
HGVS Names
NM_022166.3:c.914-26964A>G
NT_010393.15:g.8634554T>C
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13780372 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9941077 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13780372BCM_SSAHASNP|chr16.NT_010393.14_8633609fwd/BC/Tccaggaaggtagaagaggctcaagctgcaagtatttccttgtttgatgagggttttcatc11/05/0311/22/03119Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9941077|allelePos=265|totalLen=765|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=130
 TCACTCAGAA CTCCCCTGAG CTCAGGACGG CTGGGAGGTG AATTCTACAA TGCAGGTAAG
 GGAGGAGGAG CAGCAGGAAC AAGGCTGGCA GGCAGAGGGC AGATGAGGAA GGATCCTGAG
 ATGTCAAATA GTTCTCATCT CTCTTGTCAA CCCAATGAAC TCATAGCAAA GCTGAGTCCA
 AATCCTGCCT TGCAGGACGC aatgcagtga ttgattagca atgtctgctt tggcccagga
 aggtagaaga ggctcaagct gcaa
 Y
 gtatttCCTT GTTTGATGAG GGTTTTCATC AGGGGAGTGA TGTGAGGAGA AGCACATTTT
 TTAAAGCTCA CTCTGGAAGC CATGTTTTTT TGTTTTTGTT TTTGAAGAGA AGACAGAGGC
 AGAAATGGAG CAGGAGAAAG AGTTGGGAAG TGACTGTAAT ACTACCAGAC AGAGACAATA
 CATGCCTAAA GGGCAGAGCA GGAGGCTGGG GAGGAGGAGA CAGATACAAG GTATTTAGGA
 CCTAGAAATG ATAGCGACTT TGTGGATTTA AGGGAGTAGA AATAACAGAG ACTCTTGGAT
 TTTTGGTTTG GGCAACTTGG GGAATAACAG GGTTATTCAC CTAGGAAAAA AGTTCAGGAG
 ATTTTGGAGG CAGAAGGATG GTAGGTTATT TTTCAGACCC TTAGCTCGTG GAACCCCAAG
 GTAGAAATGT CCATTGACTG TTGTAGGTTT GGATCAGGAA CCCAGACCAG TGATGAGGAA
 TAGAGTCATT GCTTAGATAT

  GeneView back to top
GeneView via analysis of contig annotation: XYLT1 xylosyltransferase I
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010393->NM_022166
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_010393->NM_022166->NP_0714498634554reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs9941077 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838365.286443516323071minusAalt_assembly_8HuRefHuRefview264
16NW_926117.145704216863140plusTalt_assembly_1CeleraCeleraview264
16NT_010393.15863455417228976plusTref_assemblyreferencereferenceview264

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010393
dbSNP Blast Analysis
UniGene Cluster ID
369101

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .