Reference SNP(refSNP) Cluster Report: rs281409

Reference SNP(refSNP) Cluster Report: rs281409

refSNP ID: rs281409
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	79/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_017805.2:c.1180-591G>A
NT_011109.15:g.21501628C>T

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss1782695 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs281409 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss364930	KWOK\|OVLP-000621-150033	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	06/30/00	10/10/03	79	Genomic	99 %
ss594171	SC_JCM\|AC040922.2_119614	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	07/12/00	10/10/03	92	Genomic	unknown
ss1169423	KWOK\|OVLP-000804-537854	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	09/02/00	10/10/03	86	Genomic	99 %
ss1171385	KWOK\|OVLP-000804-546768	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	09/02/00	10/10/03	86	Genomic	99 %
ss1782695	KWOK\|OVLP-000925-394403	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	10/05/00	10/10/03	87	Genomic	99 %
ss1783231	KWOK\|OVLP-000925-402834	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	10/05/00	10/10/03	87	Genomic	99 %
ss3716706	SC_JCM\|AC024740.3_73342	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	09/25/01	10/10/03	100	Genomic	unknown
ss10920649	BCM_SSAHASNP\|chr19.NT_011109.15_21501628	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	06/30/03	10/10/03	116	Genomic	unknown
ss12452034	WI_SSAHASNP\|chr19.NT_011109.15_21501628	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	07/04/03	10/10/03	116	Genomic	unknown
ss17620461	CSHL-HAPMAP\|CSHL-HuCC-200402.chr19.NT_011109.15_21501628	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	02/19/04	03/04/04	120	Genomic	unknown
ss19402979	CSHL-HAPMAP\|CSHL-HuDD-200402.chr19.NT_011109.15_21501628	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	02/20/04	03/04/04	120	Genomic	unknown
ss21517073	SSAHASNP\|WGSA-200403-chr19.chr19.NT_011109.15_21501628	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	03/20/04	03/20/04	121	Genomic	unknown
ss90994728	BCMHGSC_JDW\|JWB-1177282	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	02/26/08	03/01/08	129	Genomic	unknown
ss111461101	1000GENOMES\|CEU.trio.12.15.2008_3628352_chr19_53925250	fwd/B	C/T	ggctatgtacaaggagaccccccttttttt	tttgagacagagtcacgctctgttgccagg	12/15/08	12/17/08	130	Genomic	unknown

Fasta sequence (Legend)

 GAGGATGCAC TAAGGACATC ACTTCAATCC ATATCTTCAG ATCTGTTCTC TCTGTTTTCT
 ACAACAACTT TTCTATTCCC ACCAACTTTT TTTTTCCTTC ttcttctttt tttttttttt
 tttttttttg agatggagtc tcgctctgtc ctccaggctg gagtccagtg gcacgatctc
 ggctcactgc aacctctgcc tcctgagttc aagcaattct cctgcctcag tctgttgagt
 agctgggagt acaggcgcct gccaccacac ccggctaatt tttgtatttt tagtagggaa
 agggtttcac catgttggcc aggctggtct taaactcctg atctcaggtg atccacctac
 ctcggcctcc cgaagtgctg ggattacagg cgtgaactat cgcgcccggc cCCCCACCGA
 CTTTGAATAG ACACTCCAAG GAGATCTGGA TCTCAAAGGA CTCTCTAAGC ACCCGCAACG
 CCACTGAGTG GACTCTTCCC AGGCACTTTG TATGGTGGAT GGTCCCATAA CACCCATCCC
 GAAGACCGGC TATGTACAAG GAGACCCCCC ttttttt
 Y
 tttgagacag agtcacgctc tgttgccagg ctggagtgca gtggcacgat ctcggctcac
 tccaacctcc gcctcccggg ttcaagcgat tcccctgcct caacctcccg agtagttgag
 actacaggcg cgcaccatca cgcccagcta atttttgtat ttttagtagg gacagggtca
 ccatgttggc caggatggtc tcgatctctt gaccttgtga tccgcctgcc ttggcctcct
 aaagtgctgg gattacaggt gtgagccacc acacccagcc AGAGACCCAT TTCTTAACAT
 GGGCTCTACC ATTTCTTTCC CTCAAGCATT AGATGCTTTC AAGGAGATCC CTATTTCTAA
 AATGAACTGT GCAACTACCC TCACCCTCAA AGAATGGACC TTTCCAAGGA AATCTCCTTT
 TCCCCATCCC TGGTCCCACC TGTCCATTAT TTCACCCCCA CCCCACCATG GTAAAGGCT

GeneView

GeneView via analysis of contig annotation: RASIP1 Ras interacting protein 1

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_011109->NM_017805

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_011109->NM_017805->NP_060275	21501628	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs281409 maps exactly once on NCBI human chromosome 19

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
19	NW_001838497.2	1368997	45612374	minus	A	alt_assembly_8	HuRef	HuRef	view	577
19	NW_927240.1	772888	46099529	plus	T	alt_assembly_1	Celera	Celera	view	577
19	NT_011109.15	21501628	53925250	plus	C	ref_assembly	reference	reference	view	577

NCBI Resource Links

Submitter-Referenced
GenBank
NT_011109 AC008888 AC024740.3 AC040922.2

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .