R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|481812|pir||S39484 DNA-binding protein GT-2 - Arabidopsis thaliana
>gi|416490|emb|CAA51289.1| (X72780) GT-2 factor [Arabidopsis
thaliana] >gi|12322224|gb|AAG51145.1|AC079283_2 (AC079283) trihelix
DNA-binding protein (GT2) [Arabidopsis thaliana]
Length = 575
Frame 3 hits (HSPs): _______________________ ______________
Annotated Domains: ________________________________
__________________________________________________
Database sequence: | | | | | 575
0 150 300 450
__________________
Annotated Domains:
DOMO DM05803: 215..368
DOMO DM05076: 370..575
__________________
Plus Strand HSPs:
Score = 341 (120.0 bits), Expect = 1.8e-29, P = 1.8e-29
Identities = 73/148 (49%), Positives = 90/148 (60%), Frame = +3
Query: 54 QVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSEN--SKDDIGRRW 227
Q P N P+ S H+ I ES +T M + +N S RW
Sbjct: 343 QQPQQHNHKPSQRKQYQS--DHS--ITFESKEPRAVLLDTTIKMGNYDNNHSVSPSSSRW 398
Query: 228 PRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYF 407
P+ EV ALI +R +L +N ++ G KGPLWE IS GM LGY RSAKRCKEKWENINKYF
Sbjct: 399 PKTEVEALIRIR-KNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYF 457
Query: 408 RKTKDNVNKKRSLNSRTCPYFHQLSCLYGQ 497
+K K++ NKKR L+S+TCPYFHQL LY +
Sbjct: 458 KKVKES-NKKRPLDSKTCPYFHQLEALYNE 486
Score = 198 (69.7 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 41/104 (39%), Positives = 58/104 (55%), Frame = +3
Query: 216 GRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENI 395
G RWPR E LAL+ +R + + K PLWE IS+ M LGYKRS+K+CKEK+EN+
Sbjct: 39 GNRWPRPETLALLRIR-SEMDKAFRDSTLKAPLWEEISRKMMELGYKRSSKKCKEKFENV 97
Query: 396 NKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQSERE 527
KY ++TK+ K +T +F +L P+ E +
Sbjct: 98 YKYHKRTKEGRTGKSE--GKTYRFFEELEAFETLSSYQPEPESQ 139
Score = 93 (32.7 bits), Expect = 1.3, P = 0.72
Identities = 39/144 (27%), Positives = 72/144 (50%), Frame = +3
Query: 30 PSTSDTLLQVPSSSNSSPTTHNPSSSLNSHNNII--PLESNSVSTYK-PTSTTPMAS-SE 197
P+TS +P S+S+P+T SS L H+ + P+ +N K P+STTP S
Sbjct: 151 PATSSL---IPWISSSNPSTEKSSSPLKHHHQVSVQPITTNPTFLAKQPSSTTPFPFYSS 207
Query: 198 NSKDDIGRRWPRDEVL---ALINLRCTSLSSN----EEKEGNKGPLWERISQGMSALGYK 356
N+ + + ++++ + +NL +S SS+ EE++ ++ + + L +
Sbjct: 208 NNTTTVSQPPISNDLMNNVSSLNLFSSSTSSSTASDEEEDHHQVKSSRKKRKYWKGL-FT 266
Query: 357 RSAKRCKEKWENINKYFRKTKDNVNKKR 440
+ K EK E + K F +T + K+R
Sbjct: 267 KLTKELMEKQEKMQKRFLETLEYREKER 294
>gi|2664202|emb|CAA05997.1| (AJ003217) GT2 [Arabidopsis thaliana]
Length = 575
Frame 3 hits (HSPs): _______________________ ______________
__________________________________________________
Database sequence: | | | | | 575
0 150 300 450
Plus Strand HSPs:
Score = 340 (119.7 bits), Expect = 2.4e-29, P = 2.4e-29
Identities = 73/148 (49%), Positives = 90/148 (60%), Frame = +3
Query: 54 QVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSEN--SKDDIGRRW 227
Q P N P+ S H+ I ES +T M + +N S RW
Sbjct: 343 QHPQQHNHKPSQRKQYQS--DHS--ITFESKEPRAVLLDTTIKMGNYDNNHSVSPSSSRW 398
Query: 228 PRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYF 407
P+ EV ALI +R +L +N ++ G KGPLWE IS GM LGY RSAKRCKEKWENINKYF
Sbjct: 399 PKTEVEALIRIR-KNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYF 457
Query: 408 RKTKDNVNKKRSLNSRTCPYFHQLSCLYGQ 497
+K K++ NKKR L+S+TCPYFHQL LY +
Sbjct: 458 KKVKES-NKKRPLDSKTCPYFHQLEALYNE 486
Score = 198 (69.7 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 41/104 (39%), Positives = 58/104 (55%), Frame = +3
Query: 216 GRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENI 395
G RWPR E LAL+ +R + + K PLWE IS+ M LGYKRS+K+CKEK+EN+
Sbjct: 39 GNRWPRPETLALLRIR-SEMDKAFRDSTLKAPLWEEISRKMMELGYKRSSKKCKEKFENV 97
Query: 396 NKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQSERE 527
KY ++TK+ K +T +F +L P+ E +
Sbjct: 98 YKYHKRTKEGRTGKSE--GKTYRFFEELEAFETLSSYQPEPESQ 139
Score = 93 (32.7 bits), Expect = 1.3, P = 0.72
Identities = 39/144 (27%), Positives = 72/144 (50%), Frame = +3
Query: 30 PSTSDTLLQVPSSSNSSPTTHNPSSSLNSHNNII--PLESNSVSTYK-PTSTTPMAS-SE 197
P+TS +P S+S+P+T SS L H+ + P+ +N K P+STTP S
Sbjct: 151 PATSSL---IPWISSSNPSTEKSSSPLKHHHQVSVQPITTNPTFLAKQPSSTTPFPFYSS 207
Query: 198 NSKDDIGRRWPRDEVL---ALINLRCTSLSSN----EEKEGNKGPLWERISQGMSALGYK 356
N+ + + ++++ + +NL +S SS+ EE++ ++ + + L +
Sbjct: 208 NNTTTVSQPPISNDLMNNVSSLNLFSSSTSSSTASDEEEDHHQVKSSRKKRKYWKGL-FT 266
Query: 357 RSAKRCKEKWENINKYFRKTKDNVNKKR 440
+ K EK E + K F +T + K+R
Sbjct: 267 KLTKELMEKQEKMQKRFLETLEYREKER 294
>gi|12322223|gb|AAG51144.1|AC079283_1 (AC079283) GT-like trihelix DNA-binding
protein, putative [Arabidopsis thaliana]
Length = 603
Frame 3 hits (HSPs): _____________ ___________
__________________________________________________
Database sequence: | | | | || 603
0 150 300 450 600
Plus Strand HSPs:
Score = 319 (112.3 bits), Expect = 5.9e-27, P = 5.9e-27
Identities = 68/135 (50%), Positives = 87/135 (64%), Frame = +3
Query: 177 TPMASSENSKDDIGRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYK 356
TP AS+ +S RWP+ E+ ALI LR T+L S ++ G KGPLWE IS GM LG+
Sbjct: 399 TPAASASSS------RWPKVEIEALIKLR-TNLDSKYQENGPKGPLWEEISAGMRRLGFN 451
Query: 357 RSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQSEREGNY 536
R++KRCKEKWENINKYF+K K++ NKKR +S+TCPYFHQL LY + N
Sbjct: 452 RNSKRCKEKWENINKYFKKVKES-NKKRPEDSKTCPYFHQLDALYRERN----KFHSNNN 506
Query: 537 CLNPTPNSGQVPPDD 581
+ +SG V PD+
Sbjct: 507 IAASSSSSGLVKPDN 521
Score = 200 (70.4 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 49/142 (34%), Positives = 78/142 (54%), Frame = +3
Query: 78 SPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKD--DIG---RRWPRDEV 242
+PTT ++++ + P +N+ S + + + E S++ D G RWPR E
Sbjct: 8 TPTTTAAATTVTTATAPPPQSNNNDSAATEAAAAAVGAFEVSEEMHDRGFGGNRWPRQET 67
Query: 243 LALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRKTKD 422
LAL+ +R + + KGPLWE +S+ M+ GY R+AK+CKEK+EN+ KY ++TK+
Sbjct: 68 LALLKIR-SDMGIAFRDASVKGPLWEEVSRKMAEHGYIRNAKKCKEKFENVYKYHKRTKE 126
Query: 423 NVNKKRSLNSRTCPYFHQLSCLYGQ 497
K +T +F QL L Q
Sbjct: 127 GRTGKSE--GKTYRFFDQLEALESQ 149
Score = 194 (68.3 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 40/94 (42%), Positives = 56/94 (59%), Frame = +3
Query: 216 GRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENI 395
G RWPR E LAL+ +R + + KGPLWE +S+ M+ GY R+AK+CKEK+EN+
Sbjct: 59 GNRWPRQETLALLKIR-SDMGIAFRDASVKGPLWEEVSRKMAEHGYIRNAKKCKEKFENV 117
Query: 396 NKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQ 497
KY ++TK+ K +T +F QL L Q
Sbjct: 118 YKYHKRTKEGRTGKSE--GKTYRFFDQLEALESQ 149
>gi|100673|pir||A37288 DNA-binding protein GT-2 - rice (fragment)
Length = 334
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 334
0 150 300
Plus Strand HSPs:
Score = 304 (107.0 bits), Expect = 4.5e-26, P = 4.5e-26
Identities = 57/90 (63%), Positives = 67/90 (74%), Frame = +3
Query: 222 RWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINK 401
RWP+ EV ALI LR L ++ G KGPLWE IS GM LGY RS+KRCKEKWENINK
Sbjct: 86 RWPKTEVQALIQLRM-ELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINK 144
Query: 402 YFRKTKDNVNKKRSLNSRTCPYFHQLSCLY 491
YF+K K++ NKKR +S+TCPYFHQL +Y
Sbjct: 145 YFKKVKES-NKKRPEDSKTCPYFHQLDVIY 173
>gi|283004|pir||S28030 DNA-binding protein Gt-2 - rice
>gi|20249|emb|CAA48328.1| (X68261) gt-2 [Oryza sativa]
Length = 737
Frame 3 hits (HSPs): ________ _______
Annotated Domains: _________________________________________
__________________________________________________
Database sequence: | | | | | | 737
0 150 300 450 600
__________________
Annotated Domains:
DOMO DM05076: 67..264
DOMO DM05803: 266..456
DOMO DM05076: 458..652
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 166..173
__________________
Plus Strand HSPs:
Score = 304 (107.0 bits), Expect = 4.4e-25, P = 4.4e-25
Identities = 57/90 (63%), Positives = 67/90 (74%), Frame = +3
Query: 222 RWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINK 401
RWP+ EV ALI LR L ++ G KGPLWE IS GM LGY RS+KRCKEKWENINK
Sbjct: 489 RWPKTEVQALIQLRM-ELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINK 547
Query: 402 YFRKTKDNVNKKRSLNSRTCPYFHQLSCLY 491
YF+K K++ NKKR +S+TCPYFHQL +Y
Sbjct: 548 YFKKVKES-NKKRPEDSKTCPYFHQLDVIY 576
Score = 230 (81.0 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 44/115 (38%), Positives = 73/115 (63%), Frame = +3
Query: 216 GRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENI 395
G RWPR+E LALI +R + + + KGPLWE +S+ ++ LGYKRSAK+CKEK+EN+
Sbjct: 96 GNRWPREETLALIRIR-SEMDATFRDATLKGPLWEEVSRKLAELGYKRSAKKCKEKFENV 154
Query: 396 NKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQSEREGNYCLNPTPNS 560
+KY+++TK+ ++ + ++ +F +L L+ PQ +++ L P +S
Sbjct: 155 HKYYKRTKEGRAGRQ--DGKSYRFFTELEALHAAAPQTPQPQQQQQQQLPPVTSS 207
>gi|12322569|gb|AAG51283.1|AC027035_6 (AC027035) trihelix DNA-binding protein
(GTL1) [Arabidopsis thaliana]
Length = 594
Frame 3 hits (HSPs): _________ ___ ______________
__________________________________________________
Database sequence: | | | | | 594
0 150 300 450
Plus Strand HSPs:
Score = 291 (102.4 bits), Expect = 6.4e-24, P = 6.4e-24
Identities = 64/150 (42%), Positives = 84/150 (56%), Frame = +3
Query: 189 SSENSKDDIGRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAK 368
SSE S RWP+ E+LALINLR + + + KG LWE IS M +GY R+AK
Sbjct: 424 SSEQSSLPSSSRWPKAEILALINLR-SGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAK 482
Query: 369 RCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLY-----GQG-----KIVPQS 518
RCKEKWENINKY++K K++ NKKR +++TCPYFH+L LY G G +PQ
Sbjct: 483 RCKEKWENINKYYKKVKES-NKKRPQDAKTCPYFHRLDLLYRNKVLGSGGGSSTSGLPQD 541
Query: 519 EREGNYCLNPTPNSGQVPPDDDHQVQDDESSQ 614
+++ P G V H E +
Sbjct: 542 QKQSPVTAMKPPQEGLVNVQQTHGSASTEEEE 573
Score = 203 (71.5 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 38/91 (41%), Positives = 58/91 (63%), Frame = +3
Query: 216 GRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENI 395
G RWPR+E LAL+ +R + + S K PLWE +S+ + LGYKRS+K+CKEK+EN+
Sbjct: 60 GNRWPREETLALLRIR-SDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENV 118
Query: 396 NKYFRKTKDNVNKKRSLNSRTCPYFHQLSCL 488
KY+++TK+ + + + +F QL L
Sbjct: 119 QKYYKRTKETRGGRH--DGKAYKFFSQLEAL 147
Score = 38 (13.4 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 8/23 (34%), Positives = 13/23 (56%), Frame = +3
Query: 558 SGQVPPDDDHQVQDDESSQVGSA 626
SG DDD + D+++ GS+
Sbjct: 229 SGMGSDDDDDDMDVDQANIAGSS 251
>gi|2664198|emb|CAA05995.1| (AJ003215) GTL1 [Arabidopsis thaliana]
Length = 594
Frame 3 hits (HSPs): _________ ___ ______________
__________________________________________________
Database sequence: | | | | | 594
0 150 300 450
Plus Strand HSPs:
Score = 291 (102.4 bits), Expect = 6.4e-24, P = 6.4e-24
Identities = 64/150 (42%), Positives = 84/150 (56%), Frame = +3
Query: 189 SSENSKDDIGRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAK 368
SSE S RWP+ E+LALINLR + + + KG LWE IS M +GY R+AK
Sbjct: 424 SSEQSSLPSSSRWPKAEILALINLR-SGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAK 482
Query: 369 RCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLY-----GQG-----KIVPQS 518
RCKEKWENINKY++K K++ NKKR +++TCPYFH+L LY G G +PQ
Sbjct: 483 RCKEKWENINKYYKKVKES-NKKRPQDAKTCPYFHRLDLLYRNKVLGSGGGSSTSGLPQD 541
Query: 519 EREGNYCLNPTPNSGQVPPDDDHQVQDDESSQ 614
+++ P G V H E +
Sbjct: 542 QKQSPVTAMKPPQEGLVNVQQTHGSASTEEEE 573
Score = 199 (70.1 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 37/91 (40%), Positives = 57/91 (62%), Frame = +3
Query: 216 GRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENI 395
G RWPR+E L L+ +R + + S K PLWE +S+ + LGYKRS+K+CKEK+EN+
Sbjct: 60 GNRWPREETLVLLRIR-SDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENV 118
Query: 396 NKYFRKTKDNVNKKRSLNSRTCPYFHQLSCL 488
KY+++TK+ + + + +F QL L
Sbjct: 119 QKYYKRTKETRGGRH--DGKAYKFFSQLEAL 147
Score = 38 (13.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 8/23 (34%), Positives = 13/23 (56%), Frame = +3
Query: 558 SGQVPPDDDHQVQDDESSQVGSA 626
SG DDD + D+++ GS+
Sbjct: 229 SGMGSDDDDDDMDVDQANIAGSS 251
>gi|9665169|gb|AAF97353.1|AC021045_10 (AC021045) Putative GTL1 [Arabidopsis
thaliana]
Length = 730
Frame 3 hits (HSPs): ___ ____ ___ ___________
__________________________________________________
Database sequence: | | | | | | 730
0 150 300 450 600
Plus Strand HSPs:
Score = 291 (102.4 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 64/150 (42%), Positives = 84/150 (56%), Frame = +3
Query: 189 SSENSKDDIGRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAK 368
SSE S RWP+ E+LALINLR + + + KG LWE IS M +GY R+AK
Sbjct: 485 SSEQSSLPSSSRWPKAEILALINLR-SGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAK 543
Query: 369 RCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLY-----GQG-----KIVPQS 518
RCKEKWENINKY++K K++ NKKR +++TCPYFH+L LY G G +PQ
Sbjct: 544 RCKEKWENINKYYKKVKES-NKKRPQDAKTCPYFHRLDLLYRNKVLGSGGGSSTSGLPQD 602
Query: 519 EREGNYCLNPTPNSGQVPPDDDHQVQDDESSQ 614
+++ P G V H E +
Sbjct: 603 QKQSPVTAMKPPQEGLVNVQQTHGSASTEEEE 634
Score = 116 (40.8 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 21/48 (43%), Positives = 33/48 (68%), Frame = +3
Query: 345 LGYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQLSCL 488
LGYKRS+K+CKEK+EN+ KY+++TK+ + + + +F QL L
Sbjct: 163 LGYKRSSKKCKEKFENVQKYYKRTKETRGGRH--DGKAYKFFSQLEAL 208
Score = 90 (31.7 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 17/39 (43%), Positives = 24/39 (61%), Frame = +3
Query: 216 GRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQ 332
G RWPR+E LAL+ +R + + S K PLWE +S+
Sbjct: 60 GNRWPREETLALLRIR-SDMDSTFRDATLKAPLWEHVSR 97
Score = 38 (13.4 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 8/23 (34%), Positives = 13/23 (56%), Frame = +3
Query: 558 SGQVPPDDDHQVQDDESSQVGSA 626
SG DDD + D+++ GS+
Sbjct: 290 SGMGSDDDDDDMDVDQANIAGSS 312
>gi|9758794|dbj|BAB09092.1| (AB025628) contains similarity to DNA-binding
protein GT~gene_id:MNJ7.25 [Arabidopsis thaliana]
Length = 398
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 398
0 150 300
Plus Strand HSPs:
Score = 237 (83.4 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 51/104 (49%), Positives = 68/104 (65%), Frame = +3
Query: 216 GRRWPRDEVLALINLRCTSLSSNEEKEG-NKGPLWERISQGMSALGYKRSAKRCKEKWEN 392
GRRWP++EV ALI+ R S EEK G NKG +W+ IS M GY+RSAK+CKEKWEN
Sbjct: 301 GRRWPQEEVQALISSR----SDVEEKTGINKGAIWDEISARMKERGYERSAKKCKEKWEN 356
Query: 393 INKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQSERE 527
+NKY+R+ + +K+ +S+T YF +L Y K + ERE
Sbjct: 357 MNKYYRRVTEG-GQKQPEHSKTRSYFEKLGNFY---KTISSGERE 397
>gi|2664200|emb|CAA05996.1| (AJ003216) GTL2 [Arabidopsis thaliana]
Length = 474
Frame 3 hits (HSPs): __________ ___ ______
__________________________________________________
Database sequence: | | | | | 474
0 150 300 450
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 37/91 (40%), Positives = 57/91 (62%), Frame = +3
Query: 216 GRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENI 395
G RWPR+E L L+ +R + + S K PLWE +S+ + LGYKRS+K+CKEK+EN+
Sbjct: 60 GNRWPREETLVLLRIR-SDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENV 118
Query: 396 NKYFRKTKDNVNKKRSLNSRTCPYFHQLSCL 488
KY+++TK+ + + + +F QL L
Sbjct: 119 QKYYKRTKETRGGRH--DGKAYKFFSQLEAL 147
Score = 94 (33.1 bits), Expect = 0.75, P = 0.53
Identities = 22/47 (46%), Positives = 27/47 (57%), Frame = +3
Query: 189 SSENSKDDIGRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERIS 329
SSE S RWP+ E+LALINLR + + + KG LWE IS
Sbjct: 424 SSEQSSLPSSSRWPKAEILALINLR-SGMEPRYQDNVPKGLLWEEIS 469
Score = 38 (13.4 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 8/23 (34%), Positives = 13/23 (56%), Frame = +3
Query: 558 SGQVPPDDDHQVQDDESSQVGSA 626
SG DDD + D+++ GS+
Sbjct: 229 SGMGSDDDDDDMDVDQANIAGSS 251
>gi|2664204|emb|CAA05998.1| (AJ003218) GTL1 [Arabidopsis thaliana]
Length = 433
Frame 3 hits (HSPs): __________ ____ _________
__________________________________________________
Database sequence: | | | | 433
0 150 300
Plus Strand HSPs:
Score = 210 (73.9 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 41/75 (54%), Positives = 50/75 (66%), Frame = +3
Query: 189 SSENSKDDIGRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAK 368
SSE S RWP+ E+LALINLR + + + KG LWE IS M +GY R+AK
Sbjct: 359 SSEQSSLPSSSRWPKAEILALINLR-SGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAK 417
Query: 369 RCKEKWENINKYFRK 413
RCKEKWENINKY++K
Sbjct: 418 RCKEKWENINKYYKK 432
Score = 165 (58.1 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 32/85 (37%), Positives = 52/85 (61%), Frame = +3
Query: 234 DEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRK 413
+E L L+ +R + + S K PLWE +S+ + LGYKRS+K+CKEK+EN+ KY+++
Sbjct: 1 EETLVLLRIR-SDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENVQKYYKR 59
Query: 414 TKDNVNKKRSLNSRTCPYFHQLSCL 488
TK+ + + + +F QL L
Sbjct: 60 TKETRGGRH--DGKAYKFFSQLEAL 82
Score = 38 (13.4 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 8/23 (34%), Positives = 13/23 (56%), Frame = +3
Query: 558 SGQVPPDDDHQVQDDESSQVGSA 626
SG DDD + D+++ GS+
Sbjct: 164 SGMGSDDDDDDMDVDQANIAGSS 186
>gi|11357317|pir||T48395 GT2-like protein - Arabidopsis thaliana
>gi|7340653|emb|CAB82933.1| (AL162506) GT2-like protein
[Arabidopsis thaliana]
Length = 591
Frame 3 hits (HSPs): _________ ____________
__________________________________________________
Database sequence: | | | | | 591
0 150 300 450
Plus Strand HSPs:
Score = 200 (70.4 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 43/91 (47%), Positives = 60/91 (65%), Frame = +3
Query: 222 RWPRDEVLALINLRCTSLSSNEEKEGN-KGPLWERISQGMSAL-GYKRSAKRCKEKWENI 395
RWPR E L L+ +R S ++ KE N KGPLW+ +S+ MS GY+RS K+C+EK+EN+
Sbjct: 119 RWPRQETLTLLEIR--SRLDHKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENL 176
Query: 396 NKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYG 494
KY+RKTK+ K + + +F QL LYG
Sbjct: 177 YKYYRKTKEG--KAGRQDGKHYRFFRQLEALYG 207
Score = 158 (55.6 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 44/131 (33%), Positives = 66/131 (50%), Frame = +3
Query: 81 PTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKDDIGRRWPRDEVLALINL 260
P +P N +N I +NS + + S M ++ K W E+L L+ +
Sbjct: 378 PLCSSPEERTNGNNEI---RNNSETQNENGSDQTMTNNVCVKGS-SSCWGEQEILKLMEI 433
Query: 261 RCTSLSSNEEKEGNKGP--LWERISQGMSALGY-KRSAKRCKEKWENINKYFRKTKDNVN 431
R + S+ +E G LWE I+ + LG+ +RSA CKEKWE I+ RK K +N
Sbjct: 434 RTSMDSTFQEILGGCSDEFLWEEIAAKLIQLGFDQRSALLCKEKWEWISNGMRKEKKQIN 493
Query: 432 KKRSLNSRTCPYFH 473
KKR NS +C ++
Sbjct: 494 KKRKDNSSSCGVYY 507
>gi|6143876|gb|AAF04423.1|AC010927_16 (AC010927) hypothetical protein
[Arabidopsis thaliana]
Length = 496
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 496
0 150 300 450
Plus Strand HSPs:
Score = 173 (60.9 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 43/134 (32%), Positives = 70/134 (52%), Frame = +3
Query: 141 SNSVSTYKPTSTTPMASSENSKDDIGRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWE 320
SN+++T + S GR WPR E L L+ +R + L ++ KGPLW+
Sbjct: 62 SNTITTIQSGGCVGGFSGFTDGGGTGR-WPRQETLMLLEVR-SRLDHKFKEANQKGPLWD 119
Query: 321 RISQG------MSAL----------GYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNS 452
+S+ S+ GY RS K+C+EK+EN+ KY++KTK+ + +R +
Sbjct: 120 EVSRSHFLTLIFSSFIFPKSPFLEHGYTRSGKKCREKFENLYKYYKKTKEGKSGRRQ-DG 178
Query: 453 RTCPYFHQLSCLYGQGK 503
+ +F QL +YG+ K
Sbjct: 179 KNYRFFRQLEAIYGESK 195
>gi|9279604|dbj|BAB01062.1| (AB023041) DNA-binding protein GT-1 [Arabidopsis
thaliana]
Length = 372
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 372
0 150 300
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 32/93 (34%), Positives = 50/93 (53%), Frame = +3
Query: 225 WPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKY 404
W +DE LI+LR + + NK LWE+IS+ M G+ RS C +KW NI K
Sbjct: 55 WAQDETRTLISLRREMDNLFNTSKSNKH-LWEQISKKMREKGFDRSPSMCTDKWRNILKE 113
Query: 405 FRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQGK 503
F+K K + +K S S Y++++ ++ + K
Sbjct: 114 FKKAKQHEDKATSGGSTKMSYYNEIEDIFRERK 146
>gi|598073|gb|AAA66473.1| (L36806) GT-1 [Arabidopsis thaliana]
Length = 406
Frame 3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 0.00043, P = 0.00043
Identities = 44/162 (27%), Positives = 70/162 (43%), Frame = +3
Query: 84 TTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKDDI------GRRWPRDEVL 245
TT N S L SH++ ++ + +P + S ++ W +DE
Sbjct: 35 TTTNESVDLQSHHHHNH-HNHHLHQSQPQQQILLGESSGEDHEVKAPKKRAETWVQDETR 93
Query: 246 ALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRKTKDN 425
+LI R + NK LWE+IS M G+ RS C +KW N+ K F+K K +
Sbjct: 94 SLIMFRRGMDGLFNTSKSNKH-LWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHH 152
Query: 426 VNKKRSLNSRTCPYFHQLSCLYGQG--KIVPQSEREGNYCLNPTPNSGQV 569
R S Y+ ++ + + K+ P + N N P S +V
Sbjct: 153 ---DRGNGSAKMSYYKEIEDILRERSKKVTPP---QYNKSPNTPPTSAKV 196
>gi|9958053|gb|AAG09542.1|AC011810_1 (AC011810) DNA binding protein GT-1
[Arabidopsis thaliana]
Length = 406
Frame 3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 0.00043, P = 0.00043
Identities = 44/162 (27%), Positives = 70/162 (43%), Frame = +3
Query: 84 TTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKDDI------GRRWPRDEVL 245
TT N S L SH++ ++ + +P + S ++ W +DE
Sbjct: 35 TTTNESVDLQSHHHHNH-HNHHLHQSQPQQQILLGESSGEDHEVKAPKKRAETWVQDETR 93
Query: 246 ALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRKTKDN 425
+LI R + NK LWE+IS M G+ RS C +KW N+ K F+K K +
Sbjct: 94 SLIMFRRGMDGLFNTSKSNKH-LWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHH 152
Query: 426 VNKKRSLNSRTCPYFHQLSCLYGQG--KIVPQSEREGNYCLNPTPNSGQV 569
R S Y+ ++ + + K+ P + N N P S +V
Sbjct: 153 ---DRGNGSAKMSYYKEIEDILRERSKKVTPP---QYNKSPNTPPTSAKV 196
>gi|322754|pir||JQ1679 DNA-binding protein GT-1a - common tobacco
>gi|170271|gb|AAA34085.1| (M93436) DNA-binding protein [Nicotiana
tabacum]
Length = 380
Frame 3 hits (HSPs): __________
Annotated Domains: ______ ___
__________________________________________________
Database sequence: | | | | 380
0 150 300
__________________
Annotated Domains:
Entrez domain: helical rod #label RD1 75..94
Entrez domain: helical rod #label RD2 102..114
Entrez domain: helical rod #label RD3 128..138
__________________
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 0.00051, P = 0.00051
Identities = 27/67 (40%), Positives = 37/67 (55%), Frame = +3
Query: 225 WPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKY 404
W ++E ALI+LR S + NK LW++IS M G+ RS C +KW N+ K
Sbjct: 75 WVQEETRALISLRRELDSLFNTSKSNKH-LWDQISLKMREKGFDRSPTMCTDKWRNLLKE 133
Query: 405 FRKTKDN 425
F+K K N
Sbjct: 134 FKKAKHN 140
>gi|1093376|prf||2103313A GT1a protein [Arabidopsis thaliana]
Length = 380
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 380
0 150 300
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 0.00051, P = 0.00051
Identities = 27/67 (40%), Positives = 37/67 (55%), Frame = +3
Query: 225 WPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKY 404
W ++E ALI+LR S + NK LW++IS M G+ RS C +KW N+ K
Sbjct: 75 WVQEETRALISLRRELDSLFNTSKSNKH-LWDQISLKMREKGFDRSPTMCTDKWRNLLKE 133
Query: 405 FRKTKDN 425
F+K K N
Sbjct: 134 FKKAKHN 140
>gi|322753|pir||PQ0446 DNA-binding protein B2F - common tobacco (fragment)
>gi|258168|gb|AAB23811.1| (S46942) Box II Factor, B2F [tobacco,
Peptide, 392 aa] [Nicotiana tabacum] >gi|404085|gb|AAA34054.1|
(M96432) DNA-binding protein [Nicotiana tabacum]
Length = 392
Frame 3 hits (HSPs): __________
Annotated Domains: _______ ______
__________________________________________________
Database sequence: | | | | 392
0 150 300
__________________
Annotated Domains:
Entrez domain: alpha-helical rod #label RD1 75..103
Entrez domain: alpha-helical rod #label RD2 115..124
Entrez domain: alpha-helical rod #label RD3 138..150
Entrez domain: alpha-helical rod #label RD4 159..174
__________________
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 0.00054, P = 0.00054
Identities = 27/67 (40%), Positives = 37/67 (55%), Frame = +3
Query: 225 WPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKY 404
W ++E ALI+LR S + NK LW++IS M G+ RS C +KW N+ K
Sbjct: 87 WVQEETRALISLRRELDSLFNTSKSNKH-LWDQISLKMREKGFDRSPTMCTDKWRNLLKE 145
Query: 405 FRKTKDN 425
F+K K N
Sbjct: 146 FKKAKHN 152
>gi|11994668|dbj|BAB02896.1| (AB028609) gb|AAC27475.1~gene_id:K7P8.15~similar
to unknown protein [Arabidopsis thaliana]
Length = 310
Frame 3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | | 310
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 0.0023, P = 0.0023
Identities = 49/186 (26%), Positives = 87/186 (46%), Frame = +3
Query: 51 LQVPSSSNSSPTTHNPSSSLNS-HNNIIPLESNSVSTYKPTSTTPMASSENSKDDIGRR- 224
+ PS ++S P+ NP+S+ H P + P T + + S + R+
Sbjct: 1 MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPPHTTVVALAASTSAVARKT 60
Query: 225 ----WPRDEVLALINLRCTSLSSNEEK--EGNKGPL----WERISQGMSAL-GYKRSAKR 371
W +DE L LI S +EK +GPL WE I+ S+ G +R++ +
Sbjct: 61 QPVLWTQDETLLLIE-------SYKEKWFAIGRGPLKSTHWEEIAVAASSRSGVERTSTQ 113
Query: 372 CKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQSEREGNYCLNPT 551
C+ K E + K FR + ++ S+ P+++Q+ L P S R L P
Sbjct: 114 CRHKIEKMRKRFRSERQSMGPI-SI----WPFYNQMEELDSSNP-APISARPLTR-LPPN 166
Query: 552 PNSGQVPPDDDHQVQDDES 608
N+ V +++ + +D+ +
Sbjct: 167 SNNRYVDDEEEDEEEDNNN 185
>gi|9758284|dbj|BAB08808.1| (AB007649) gene_id:MLE2.6~pir||T01257~similar to
unknown protein [Arabidopsis thaliana]
Length = 330
Frame 3 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | 330
0 150 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.013, P = 0.013
Identities = 33/128 (25%), Positives = 56/128 (43%), Frame = +3
Query: 60 PSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKDDIGRRWPRDE 239
PSSS S T N + ++ E NS + + + + K +W +E
Sbjct: 186 PSSSPSPSETENMNKVADTEPKAEGKE-NSRDDDELADASDSETKSSPKRVRKNKWKPEE 244
Query: 240 VLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRKTK 419
+ +I +R L S + + LWE IS +SA G RS +CK W ++ + + ++K
Sbjct: 245 IKKVIRMR-GELHSRFQVVKGRMALWEEISSNLSAEGINRSPGQCKSLWASLIQKYEESK 303
Query: 420 DNVNKKRS 443
+ K S
Sbjct: 304 ADERSKTS 311
>gi|12322229|gb|AAG51150.1|AC079283_7 (AC079283) hypothetical protein
[Arabidopsis thaliana]
Length = 385
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 385
0 150 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.017, P = 0.017
Identities = 35/143 (24%), Positives = 68/143 (47%), Frame = +3
Query: 60 PSSSNSSPTTHNPSSSLNS-HNNIIPLESNSVSTYKPTSTTP-----MASSENSKDDIGR 221
P++ N + H+P+S +S NN + N+V K + + ++S +K
Sbjct: 22 PNAINQNQKQHHPNSRQDSGFNNTMDTRHNNVDRGKKSMSEDDELCLLSSDGQNKSKENS 81
Query: 222 RWPRDEVL-ALINLRCTSLSSNEEKEGN---------KGPLWERISQGMSALGYKRSAKR 371
W R + + ++ L T+LS E G+ KG W +S+ M GY S ++
Sbjct: 82 PWQRVKWMDKMVKLMITALSYIGEDSGSDKKFAVLQKKGK-WRSVSKVMDERGYHVSPQQ 140
Query: 372 CKEKWENINKYFRKTKDNVNKKRS 443
C++K+ ++NK ++K + + + S
Sbjct: 141 CEDKFNDLNKRYKKLNEMLGRGTS 164
>gi|7303413|gb|AAF58470.1| (AE003821) CG13148 gene product [Drosophila
melanogaster]
Length = 370
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 370
0 150 300
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.11, P = 0.10
Identities = 38/150 (25%), Positives = 66/150 (44%), Frame = +3
Query: 54 QVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKDDIGRRWPR 233
Q PS+ N+ N + S +++ L+ + + TS A + + R W
Sbjct: 12 QAPSNGNN--VEDNEPYQI-SDDDLDDLDDDCLLEEADTSG---AGNNVGRGPYERAWTT 65
Query: 234 DEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRK 413
+ ALI++R S E + LW ++ + LG++ SA + ++KW NI + K
Sbjct: 66 EATRALIHIRGPMEGSFTEGRQKRTALWLHCTRQLQRLGFRYSAAKVQKKWHNILITYNK 125
Query: 414 TKDNVNKKRSLNSRTCPYFHQLSCLYGQGK 503
N+NKK +F ++ Y QGK
Sbjct: 126 ---NLNKKYVSGYVHWEFFEEMF-KYLQGK 151
>gi|7485587|pir||T01257 hypothetical protein F16M14.18 - Arabidopsis thaliana
>gi|3335373|gb|AAC27174.1| (AC003028) putative GT-1-like
transcription factor [Arabidopsis thaliana]
Length = 289
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | 289
0 50 100 150 200 250
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.12, P = 0.11
Identities = 29/100 (29%), Positives = 48/100 (48%), Frame = +3
Query: 111 NSHNNIIPLESNSVSTYKPTSTTPMASSENSKDDIGRRWPRDEVLALINLRCTSLSSNEE 290
+ H+++ L+ + S TP +S + D +W +E LI +R + E
Sbjct: 4 HQHHHLHQLQYLNKHHLHTQSQTPEIASPVAVGDRFPQWSVEETKELIGIRGELDQTFME 63
Query: 291 KEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFR 410
+ NK LWE IS M + RS ++CK KW+N+ F+
Sbjct: 64 TKRNK-LLWEVISNKMRDKSFPRSPEQCKCKWKNLVTRFK 102
>gi|11358885|pir||T48160 transcription factor GT-3a - Arabidopsis thaliana
>gi|6573264|gb|AAF17610.1|AF206715_1 (AF206715) transcription
factor GT-3a [Arabidopsis thaliana] >gi|7320716|emb|CAB81921.1|
(AL161746) transcription factor GT-3a [Arabidopsis thaliana]
Length = 323
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | | 323
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.55, P = 0.42
Identities = 26/96 (27%), Positives = 47/96 (48%), Frame = +3
Query: 117 HNNIIPLESNSVSTYKPTSTTPMASSENSKDDIGRRWPRDEVLALINLRCTSLSSNEEKE 296
H+++I + T+T + I + W +E L+ +R + E +
Sbjct: 17 HHHLIQQQQLPPPPLSTTATMDPGGGGGGGERIPQ-WSIEETKELLAIREELDQTFMETK 75
Query: 297 GNKGPLWERISQGMSALGYKRSAKRCKEKWEN-INKY 404
NK LWE ++ M+ G+ RSA++CK KW+N + +Y
Sbjct: 76 RNK-LLWEVVAAKMADKGFVRSAEQCKSKWKNLVTRY 111
>gi|6322072 ref|NP_012147.1| inhibitor of ras; Rpi1p [Saccharomyces cerevisiae]
>gi|730607|sp|P23250|RPI1_YEAST NEGATIVE RAS PROTEIN REGULATOR
PROTEIN >gi|1078324|pir||S49890 regulatory protein RPI1 - yeast
(Saccharomyces cerevisiae) >gi|599998|emb|CAA86873.1| (Z46833)
negative regulator [Saccharomyces cerevisiae]
Length = 407
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 407
0 150 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.61, P = 0.46
Identities = 33/133 (24%), Positives = 67/133 (50%), Frame = +3
Query: 39 SDTLLQVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKDDIG 218
SD L P +SS + N +S+ NS++N ++ N ++ SS +S I
Sbjct: 44 SDCSLVTPRIISSSNSNSNSNSNSNSNSNSGSIDENELNNSN--------SSSSSARQIR 95
Query: 219 RRWPRDEVLALIN--LRCTSLSSNEEKEGNKGPLWERISQGM-SALGYKRSAKRCKEKWE 389
++W E +A I + + L + E W++IS+ + GY+R++++C ++++
Sbjct: 96 KKWKEPEDIAFITTIMNNSQLLTFVEYFKPMKNFWKKISKILFQQYGYERNSRQCHDRFK 155
Query: 390 NINKYFRKTKDNVNKK 437
+ Y + K + +KK
Sbjct: 156 VL--YTKSLKVHPSKK 169
>gi|8247310|emb|CAB92936.1| (AJ290927) hypothetical protein [Plasmodium
falciparum]
Length = 98
Frame 3 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | 98
0 20 40 60 80
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.80, P = 0.55
Identities = 27/76 (35%), Positives = 48/76 (63%), Frame = +3
Query: 60 PSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKP--TSTTPMASSENSK-------DD 212
PSSS+SSP++ + SSS + P S+S S+ P +S++P ++S++SK D+
Sbjct: 15 PSSSSSSPSSSSSSSSSS------PSASSSSSSSSPASSSSSPSSTSDDSKNASLDKIDE 68
Query: 213 IGRRWPRDEVLALINLRCTSLS 278
++ ++E L LI+ T L+
Sbjct: 69 ELQKKKKNEKLLLISSIATGLA 90
>gi|7292702|gb|AAF48099.1| (AE003487) CG15741 gene product [Drosophila
melanogaster]
Length = 135
Frame 3 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 135
0 50 100
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 2.8, P = 0.94
Identities = 23/65 (35%), Positives = 37/65 (56%), Frame = +3
Query: 18 TAGXPSTSDTLLQVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPM-ASS 194
T+ STS T P+SS S ++ +P+SS +S ++ + + +T PT+TT ASS
Sbjct: 28 TSPASSTSPTSSTSPTSSTSPTSSTSPTSSSSSSSS--STATTTTTTVAPTTTTTTEASS 85
Query: 195 ENSKDD 212
+S D
Sbjct: 86 SSSSSD 91
>gi|1085433|pir||S55316 mucin (clone PGM-2B) - pig >gi|915207|gb|AAC48525.1|
(U10281) gastric mucin [Sus scrofa]
Length = 317
Frame 3 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM05454: 1..317
__________________
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 4.5, P = 0.99
Identities = 26/66 (39%), Positives = 40/66 (60%), Frame = +3
Query: 18 TAGXPSTSDTLLQVPSSSNSSPTTH----NPSSSLNSH-NNIIPLESNSVSTYKPTSTTP 182
++ P+TS T +Q PSSS S+PTT PSSS + ++ I ++ +S S+ TS T
Sbjct: 247 SSSSPTTSTTSVQ-PSSSGSAPTTSATSVQPSSSSSPPISSTISVQPSSSSSAPTTSATS 305
Query: 183 MASSENS 203
+ SS +S
Sbjct: 306 VQSSSSS 312
>gi|1519703|gb|AAB07588.1| (U67923) pXi [Dictyostelium discoideum]
Length = 325
Frame 3 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | | 325
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 4.6, P = 0.99
Identities = 28/121 (23%), Positives = 54/121 (44%), Frame = +3
Query: 90 HNPSSSLNSHNNIIPLESNSV---STYKPTSTTPMASSENSKDDIGRRWPRDEVLALINL 260
HN ++ N++NN ++S ++Y +S S +S + G + +D+ ++
Sbjct: 105 HNNNNINNNNNNFCHSRNSSFGYGNSYN-SSNGGSGCSSSSDESTGGSFKKDKSKYGVDR 163
Query: 261 RCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRKTKDNVNKKR 440
C L S EK ++++ +S K K K K+E ++K K + K +
Sbjct: 164 ICLDLQSEFEKLSLPKETMDKLASVLSNYKQKNQEKSLKVKYEKQKDKYKKLKSQLKKDK 223
Query: 441 SL 446
SL
Sbjct: 224 SL 225
>gi|7291632|gb|AAF47055.1| (AE003461) CG13560 gene product [Drosophila
melanogaster]
Length = 181
Frame 3 hits (HSPs): __________________
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 5.2, Sum P(2) = 0.99
Identities = 23/66 (34%), Positives = 32/66 (48%), Frame = +3
Query: 3 GXFGLTAGXPSTSDTLLQVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTP 182
G G T G ST T S+ S+ T+ +PS+S S + + S ST TST+P
Sbjct: 74 GSTGST-GTGSTGSTATGSTGSTGST-TSGSPSTSTGSSSTNPSPSTTSPSTSPTTSTSP 131
Query: 183 MASSEN 200
SS +
Sbjct: 132 SDSSSS 137
Score = 49 (17.2 bits), Expect = 5.2, Sum P(2) = 0.99
Identities = 13/37 (35%), Positives = 20/37 (54%), Frame = +1
Query: 277 AAMKRKKETRVLCGRESRKGCQRWDTREVQRGARRSG 387
++ + +KE R R R+ +R + RE QR RR G
Sbjct: 145 SSKRNRKERRRRYRRRQRRQERRRERRERQRQQRRRG 181
>gi|7290372|gb|AAF45831.1| (AE003425) CG14419 gene product [Drosophila
melanogaster]
Length = 195
Frame 3 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | 195
0 50 100 150
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 5.3, P = 1.0
Identities = 31/135 (22%), Positives = 66/135 (48%), Frame = +3
Query: 33 STSDTLLQVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKDD 212
+T+ T + P S +++ +T S++ ++ + P S + ST P STTP ++ +
Sbjct: 52 TTTTTTTEKPKSESTTASTTTTSTTPSTTTSTTP--STTPST-TP-STTPSTTTTTTTTT 107
Query: 213 IGRRWPRDEVLALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKRCKEKWEN 392
+ P D+ A + +C LS +++ G+ S G K+SAK+ +++ +
Sbjct: 108 TPK--PDDDEAAKLLQQCAELSRRKKRGGSS-------SSEEDDSGEKKSAKKERKQLKK 158
Query: 393 INKYFRKTKDNVNKK 437
+ K +K ++ +K
Sbjct: 159 LCKQLKKQQERKQEK 173
>gi|9797755|gb|AAF98573.1|AC013427_16 (AC013427) Contains similarity to
beta-1,3 glucanase from Pisum sativum gb|AJ251646. ESTs
gb|AV552865, gb|AV551442, gb|AV531309, gb|AV563097 come from this
gene. [Arabidopsis thaliana]
Length = 197
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 5.4, P = 1.0
Identities = 28/67 (41%), Positives = 37/67 (55%), Frame = +3
Query: 18 TAGXPSTSDTLLQVPSSSNSSPTTHNPSSSLNSHNNIIPLE---SNSVSTYKPTSTTPMA 188
TAG PST + S+ +SP T NPS+ NS N+ +P ++S T+ P STT
Sbjct: 113 TAGYPSTGN-------STTASPGTTNPSTG-NSTNSTLPTNDKPTSSTITF-PDSTTMGP 163
Query: 189 SSENSKDDIG 218
SS S D G
Sbjct: 164 SSSTSGDPNG 173
>gi|6473880|dbj|BAA87194.1| (AB027890) Hypothetical protein
[Schizosaccharomyces pombe]
Length = 210
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 6.2, P = 1.0
Identities = 18/63 (28%), Positives = 41/63 (65%), Frame = +3
Query: 18 TAGXPSTSDTLLQVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSE 197
++ S+S + SSS+SS ++ + SSS +S ++ +P+ S++ S++ +S++ +SS
Sbjct: 36 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSS 95
Query: 198 NSK 206
+S+
Sbjct: 96 SSR 98
>gi|172480|gb|AAA35001.1| (M63178) RPI1 [Saccharomyces cerevisiae]
>gi|233044|gb|AAB39843.1| (S42682) 46-kDa negative regulator of the
Ras-cyclic AMP pathway=RPI1 [Saccharomyces cerevisiae, Peptide, 406
aa]
Length = 406
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 8.4, P = 1.0
Identities = 33/134 (24%), Positives = 67/134 (50%), Frame = +3
Query: 39 SDTLLQVPSSSNSSPTTHNPSSSLNSHNNIIPLESNSVSTYKPTSTTPMASSENSKDDIG 218
SD L P +SS + N +S NS++N ++ N ++ SS +S I
Sbjct: 44 SDCSLVTPRIISSSNSNSNSNS--NSNSNPGSIDENELNNSN--------SSSSSVRQIR 93
Query: 219 RRWPRDEVLALIN--LRCTSLSSNEEKEGNKGPLWERISQGM-SALGYKRSAKRCKEKWE 389
++W E +A I + + L + E W++IS+ + GY+R++++C ++++
Sbjct: 94 KKWKEPEDIAFITTIMNNSQLLTFVEYFKPMKNFWKKISKILFQQYGYERNSRQCHDRFK 153
Query: 390 NINKYFRKTKDNVNKKR 440
+ Y + K + +KK+
Sbjct: 154 VL--YTKSLKVHPSKKK 168
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.91
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.314 0.130 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.160 0.577
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.341 0.146 0.490
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.350 0.155 0.591
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.164 0.621
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.344 0.155 0.522
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 220 218 10. 77 3 12 23 0.11 35
32 0.12 38
+2 0 220 218 10. 77 3 12 22 0.10 35
32 0.12 38
+1 0 221 221 10. 77 3 12 22 0.11 35
32 0.12 38
-1 0 221 219 10. 77 3 12 22 0.10 35
32 0.12 38
-2 0 220 219 10. 77 3 12 22 0.10 35
32 0.12 38
-3 0 220 218 10. 77 3 12 22 0.10 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 35
No. of states in DFA: 594 (59 KB)
Total size of DFA: 238 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 234.06u 0.98s 235.04t Elapsed: 00:01:28
Total cpu time: 234.12u 1.02s 235.14t Elapsed: 00:01:28
Start: Wed Jan 16 17:24:05 2002 End: Wed Jan 16 17:25:33 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000