Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 5 |
| Asn | 2 |
| Asp | 2 |
| Cys | 1 |
| Gln | 3 |
| Glu | 2 |
| Gly | 5 |
| His | 1 |
| Ile | 2 |
| Leu | 8 |
| Lys | 3 |
| Met | 7 |
| Phe | 1 |
| Pro | 2 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 3 |
| Trp | 0 |
| Tyr | 1 |
| Undet | 0 |
| Val | 1 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | TGC | Contig548 | 8 | 4591..4519 | 0..0 | 84.64 | 67.45 |
| Ala | TGC | Contig604 | 1 | 8020..7948 | 0..0 | 84.64 | 67.45 |
| Ala | TGC | Contig654 | 1 | 47877..47949 | 0..0 | 84.64 | 67.45 |
| Arg | ACG | Contig548 | 6 | 4767..4694 | 0..0 | 67.16 | 47.63 |
| Arg | ACG | Contig597 | 7 | 14020..13947 | 0..0 | 67.16 | 47.63 |
| Arg | ACG | Contig597 | 9 | 13794..13721 | 0..0 | 67.16 | 47.63 |
| Arg | CCT | Contig653 | 1 | 52225..52152 | 0..0 | 77.60 | 50.56 |
| Arg | TCT | Contig628 | 1 | 23351..23427 | 0..0 | 80.34 | 57.06 |
| Asn | GTT | Contig629 | 2 | 22032..21959 | 0..0 | 76.32 | 53.17 |
| Asn | GTT | Contig654 | 2 | 51377..51450 | 0..0 | 76.32 | 53.17 |
| Asp | GTC | Contig548 | 13 | 4113..4038 | 0..0 | 75.67 | 53.58 |
| Asp | GTC | Contig548 | 20 | 3457..3385 | 0..0 | 67.38 | 45.31 |
| Cys | GCA | Contig639 | 1 | 14007..13937 | 0..0 | 71.31 | 44.14 |
| Gln | CTG | Contig617 | 1 | 24073..24145 | 0..0 | 72.94 | 49.33 |
| Gln | TTG | Contig579 | 2 | 566 ..495 | 0..0 | 64.56 | 36.74 |
| Gln | TTG | Contig605 | 3 | 233 ..304 | 0..0 | 64.56 | 36.74 |
| Glu | TTC | Contig548 | 17 | 3745..3674 | 0..0 | 70.15 | 45.10 |
| Glu | TTC | Contig548 | 24 | 3136..3065 | 0..0 | 70.15 | 45.10 |
| Gly | CCC | Contig503 | 1 | 363 ..293 | 0..0 | 64.85 | 47.79 |
| Gly | GCC | Contig548 | 4 | 4951..4880 | 0..0 | 85.49 | 65.03 |
| Gly | GCC | Contig597 | 5 | 14204..14133 | 0..0 | 85.49 | 65.03 |
| Gly | TCC | Contig548 | 14 | 4036..3966 | 0..0 | 71.75 | 46.46 |
| Gly | TCC | Contig548 | 22 | 3304..3234 | 0..0 | 71.75 | 46.46 |
| His | GTG | Contig605 | 2 | 151 ..223 | 0..0 | 70.96 | 47.66 |
| Ile | GAT | Contig548 | 15 | 3952..3879 | 0..0 | 92.91 | 71.41 |
| Ile | GAT | Contig548 | 23 | 3221..3148 | 0..0 | 92.91 | 71.41 |
| Leu | CAA | Contig605 | 1 | 5 ..89 | 0..0 | 66.51 | 41.20 |
| Leu | CAA | Contig605 | 4 | 322 ..406 | 0..0 | 66.68 | 41.45 |
| Leu | CAA | Contig639 | 2 | 13909..13824 | 0..0 | 57.56 | 33.12 |
| Leu | CAG | Contig591 | 1 | 1881 ..1798 | 0..0 | 62.83 | 28.74 |
| Leu | TAA | Contig548 | 5 | 4863..4778 | 0..0 | 68.14 | 41.32 |
| Leu | TAA | Contig597 | 6 | 14116..14031 | 0..0 | 68.14 | 41.32 |
| Leu | TAG | Contig548 | 2 | 5134..5053 | 0..0 | 71.25 | 46.60 |
| Leu | TAG | Contig597 | 3 | 14387..14306 | 0..0 | 71.25 | 46.60 |
| Lys | CTT | Contig613 | 1 | 3253 ..3181 | 0..0 | 86.12 | 71.55 |
| Lys | TTT | Contig548 | 1 | 5214..5142 | 0..0 | 88.58 | 64.59 |
| Lys | TTT | Contig597 | 2 | 14467..14395 | 0..0 | 88.58 | 64.59 |
| Met | CAT | Contig525 | 1 | 1405..1478 | 0..0 | 74.96 | 50.16 |
| Met | CAT | Contig548 | 10 | 4404..4331 | 0..0 | 89.25 | 63.59 |
| Met | CAT | Contig548 | 12 | 4205..4132 | 0..0 | 77.81 | 52.62 |
| Met | CAT | Contig548 | 19 | 3549..3476 | 0..0 | 77.81 | 52.62 |
| Met | CAT | Contig548 | 9 | 4491..4418 | 0..0 | 77.61 | 63.01 |
| Met | CAT | Contig653 | 2 | 16855..16782 | 0..0 | 82.48 | 52.98 |
| Met | CAT | Contig655 | 1 | 59892..59965 | 0..0 | 85.29 | 55.89 |
| Phe | GAA | Contig548 | 21 | 3381..3309 | 0..0 | 75.85 | 58.16 |
| Pro | TGG | Contig548 | 7 | 4684..4611 | 0..0 | 86.85 | 64.84 |
| Pro | TGG | Contig597 | 8 | 13925..13852 | 0..0 | 86.85 | 64.84 |
| Ser | CGA | Contig656 | 1 | 71122..71209 | 0..0 | 69.81 | 40.60 |
| Ser | GCT | Contig548 | 16 | 3854..3767 | 0..0 | 62.72 | 29.81 |
| Ser | TGA | Contig548 | 11 | 4307..4218 | 0..0 | 62.15 | 29.02 |
| Ser | TGA | Contig548 | 18 | 3651..3562 | 0..0 | 62.15 | 29.02 |
| Thr | GGT | Contig629 | 1 | 22246..22318 | 0..0 | 78.28 | 58.35 |
| Thr | TGT | Contig548 | 3 | 5035..4963 | 0..0 | 90.00 | 72.56 |
| Thr | TGT | Contig597 | 4 | 14288..14216 | 0..0 | 90.00 | 72.56 |
| Tyr | GTA | Contig579 | 1 | 654 ..573 | 0..0 | 64.72 | 34.26 |
| Val | TAC | Contig597 | 1 | 14543..14471 | 0..0 | 86.53 | 66.81 |
tRNA Models
Contig503.trna1 (363-293) Length: 71 bp
Type: Gly Anticodon: CCC at 33-35 (331-329) Score: 64.85
HMM Sc=47.79 Sec struct Sc=17.06
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTTAGTGGTAAAATCCCAGCTTCCCAAGCTGATGtCGCGGGTTCGATTCCCGTCACCCGCT
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig525.trna1 (1405-1478) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1439-1441) Score: 74.96
HMM Sc=50.16 Sec struct Sc=24.80
* | * | * | * | * | * | * |
Seq: CTACCCTTAGCTCAGTTGGTcAGAGCAGACGGCTCATAACCGTCCGGtCGTAGGTTCGAGTCCTACAGGGTACA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Contig548.trna1 (5214-5142) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (5181-5179) Score: 88.58
HMM Sc=64.59 Sec struct Sc=23.99
* | * | * | * | * | * | * |
Seq: GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCACAGGTTCGAGCCCTGTACGGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna2 (5134-5053) Length: 82 bp
Type: Leu Anticodon: TAG at 35-37 (5100-5098) Score: 71.25
HMM Sc=46.60 Sec struct Sc=24.65
* | * | * | * | * | * | * | * |
Seq: GCGGGTGTGGCGGAATTGGCaGACGCACTAGATTTAGGATCTAGCGCCTTACGGCGTGGGGGTTCAAGTCCCTTCACCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.
Contig548.trna3 (5035-4963) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (5002-5000) Score: 90.00
HMM Sc=72.56 Sec struct Sc=17.44
* | * | * | * | * | * | * |
Seq: GCCGGCTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGGGtCGAGGGTTCAAGTCCTTTAGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna4 (4951-4880) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (4919-4917) Score: 85.49
HMM Sc=65.03 Sec struct Sc=20.46
* | * | * | * | * | * | * |
Seq: GCGGAAATAGCTCAGTGGTAGAGCACCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAACCCCGTTTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna5 (4863-4778) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (4829-4827) Score: 68.14
HMM Sc=41.32 Sec struct Sc=26.82
* | * | * | * | * | * | * | * | *
Seq: GCCGGGGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig548.trna6 (4767-4694) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (4733-4731) Score: 67.16
HMM Sc=47.63 Sec struct Sc=19.53
* | * | * | * | * | * | * |
Seq: GCGCCCATAGCTCAACTGGAtAGAGTGTTTGACTACGGATCAAAAGGtTAGGGGTTCGACTCCTCTTGGGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna7 (4684-4611) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (4650-4648) Score: 86.85
HMM Sc=64.84 Sec struct Sc=22.01
* | * | * | * | * | * | * |
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGGGtCGCAGGTTCGAATCCTGTCTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna8 (4591-4519) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (4558-4556) Score: 84.64
HMM Sc=67.45 Sec struct Sc=17.19
* | * | * | * | * | * | * |
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna9 (4491-4418) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (4457-4455) Score: 77.61
HMM Sc=63.01 Sec struct Sc=14.60
* | * | * | * | * | * | * |
Seq: CGCGGTGTAGCTCAGCTGGCtAGAGCGTCCGGTTCATACCCGGGAGGtCGGGGGTTCGATCCCCTCCGCCGCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna10 (4404-4331) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (4370-4368) Score: 89.25
HMM Sc=63.59 Sec struct Sc=25.66
* | * | * | * | * | * | * |
Seq: GGACCTTTAGCTCAGTTGGTtAGAGCAGACGGCTCATAACCGTCCGGtCGTAGGTTCGAGTCCTACAAGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna11 (4307-4218) Length: 90 bp
Type: Ser Anticodon: TGA at 37-39 (4271-4269) Score: 62.15
HMM Sc=29.02 Sec struct Sc=33.13
* | * | * | * | * | * | * | * | *
Seq: GGAGGATTACCCAAGTCcGGCtgAAGGGAACGGTCTTGAAAACCGTCAGGCGGGTAAAACCGTGCAAGGGTTCGAATCCCTTATCCTCCT
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>......<<<<..>>>>>.......<<<<<<<<<<<<.
Contig548.trna12 (4205-4132) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (4171-4169) Score: 77.81
HMM Sc=52.62 Sec struct Sc=25.19
* | * | * | * | * | * | * |
Seq: CGCGGGATGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCTCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Contig548.trna13 (4113-4038) Length: 76 bp
Type: Asp Anticodon: GTC at 34-36 (4080-4078) Score: 75.67
HMM Sc=53.58 Sec struct Sc=22.09
* | * | * | * | * | * | * | *
Seq: GGTTCCGTGGTGTAGGGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCGGGTTCGATTCCCGTCGGAACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig548.trna14 (4036-3966) Length: 71 bp
Type: Gly Anticodon: TCC at 33-35 (4004-4002) Score: 71.75
HMM Sc=46.46 Sec struct Sc=25.29
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTTAGTGGTAAAACCACAGCCTTCCAAGCTGTTGtCGCGAGTTCGATTCTCGTCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig548.trna15 (3952-3879) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (3918-3916) Score: 92.91
HMM Sc=71.41 Sec struct Sc=21.50
* | * | * | * | * | * | * |
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCGAGTCCATTTAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna16 (3854-3767) Length: 88 bp
Type: Ser Anticodon: GCT at 35-37 (3820-3818) Score: 62.72
HMM Sc=29.81 Sec struct Sc=32.91
* | * | * | * | * | * | * | * | *
Seq: GGGGAAGTACTCAAGTGGCtgAAGAGGCGCCCCTGCTAAGGGTGTAGGTCGGGAAACCGGCGCGAGGGTTCAAATCCCTCCTTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig548.trna17 (3745-3674) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (3712-3710) Score: 70.15
HMM Sc=45.10 Sec struct Sc=25.05
* | * | * | * | * | * | * |
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig548.trna18 (3651-3562) Length: 90 bp
Type: Ser Anticodon: TGA at 37-39 (3615-3613) Score: 62.15
HMM Sc=29.02 Sec struct Sc=33.13
* | * | * | * | * | * | * | * | *
Seq: GGAGGATTACCCAAGTCcGGCtgAAGGGAACGGTCTTGAAAACCGTCAGGCGGGTAAAACCGTGCAAGGGTTCGAATCCCTTATCCTCCT
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>......<<<<..>>>>>.......<<<<<<<<<<<<.
Contig548.trna19 (3549-3476) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (3515-3513) Score: 77.81
HMM Sc=52.62 Sec struct Sc=25.19
* | * | * | * | * | * | * |
Seq: CGCGGGATGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCTCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Contig548.trna20 (3457-3385) Length: 73 bp
Type: Asp Anticodon: GTC at 34-36 (3424-3422) Score: 67.38
HMM Sc=45.31 Sec struct Sc=22.07
* | * | * | * | * | * | * |
Seq: GGTTCCGTGGTGTAGGGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCGGGTTCGATTCCCGTCGGAACCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna21 (3381-3309) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (3348-3346) Score: 75.85
HMM Sc=58.16 Sec struct Sc=17.69
* | * | * | * | * | * | * |
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAATGGATTGAAGCTCCATGTGtCGGCAGTTCGATTCTGTCCCGCGCCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<.
Contig548.trna22 (3304-3234) Length: 71 bp
Type: Gly Anticodon: TCC at 33-35 (3272-3270) Score: 71.75
HMM Sc=46.46 Sec struct Sc=25.29
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTTAGTGGTAAAACCACAGCCTTCCAAGCTGTTGtCGCGAGTTCGATTCTCGTCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig548.trna23 (3221-3148) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (3187-3185) Score: 92.91
HMM Sc=71.41 Sec struct Sc=21.50
* | * | * | * | * | * | * |
Seq: GGGCCTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCGAGTCCATTTAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig548.trna24 (3136-3065) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (3103-3101) Score: 70.15
HMM Sc=45.10 Sec struct Sc=25.05
* | * | * | * | * | * | * |
Seq: GGCCCGTTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig579.trna1 (654-573) Length: 82 bp
Type: Tyr Anticodon: GTA at 36-38 (619-617) Score: 64.72
HMM Sc=34.26 Sec struct Sc=30.46
* | * | * | * | * | * | * | * |
Seq: GGAGGAGTAGCGAgAGTGGCtAaACGCGACGGACTGTAAATCCGTTCCTTAGGGTtCAGTGGTTCGAATCCACTCTCCTCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>><<<<...>>>>>.......<<<<<<<<<<<<.
Contig579.trna2 (566-495) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (534-532) Score: 64.56
HMM Sc=36.74 Sec struct Sc=27.82
* | * | * | * | * | * | * |
Seq: TGGGGTATAGCCAAGCGGTAAGGCAAGGGACTTTGACTCCCTCATgCGTTGGTTCGAATCCAGCTACCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig591.trna1 (1881-1798) Length: 84 bp
Type: Leu Anticodon: CAG at 35-37 (1847-1845) Score: 62.83
HMM Sc=28.74 Sec struct Sc=34.09
* | * | * | * | * | * | * | * |
Seq: GCGGCTATGGCGGAATTGGCaGACGCGCTAGCTTCAGGCGCTAGTGAGGGTGACCTCGTGGAAGTTCGAGTCTTCTTAGCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<.
Contig597.trna1 (14543-14471) Length: 73 bp
Type: Val Anticodon: TAC at 34-36 (14510-14508) Score: 86.53
HMM Sc=66.81 Sec struct Sc=19.72
* | * | * | * | * | * | * |
Seq: GGAGGTTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCAGCGGTTCGATCCCGTTAACCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig597.trna2 (14467-14395) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (14434-14432) Score: 88.58
HMM Sc=64.59 Sec struct Sc=23.99
* | * | * | * | * | * | * |
Seq: GAGCCGTTAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGtCACAGGTTCGAGCCCTGTACGGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig597.trna3 (14387-14306) Length: 82 bp
Type: Leu Anticodon: TAG at 35-37 (14353-14351) Score: 71.25
HMM Sc=46.60 Sec struct Sc=24.65
* | * | * | * | * | * | * | * |
Seq: GCGGGTGTGGCGGAATTGGCaGACGCACTAGATTTAGGATCTAGCGCCTTACGGCGTGGGGGTTCAAGTCCCTTCACCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.
Contig597.trna4 (14288-14216) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (14255-14253) Score: 90.00
HMM Sc=72.56 Sec struct Sc=17.44
* | * | * | * | * | * | * |
Seq: GCCGGCTTAGCTCAGTTGGTAGAGCATCTGATTTGTAATCAGAGGGtCGAGGGTTCAAGTCCTTTAGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig597.trna5 (14204-14133) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (14172-14170) Score: 85.49
HMM Sc=65.03 Sec struct Sc=20.46
* | * | * | * | * | * | * |
Seq: GCGGAAATAGCTCAGTGGTAGAGCACCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAACCCCGTTTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig597.trna6 (14116-14031) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (14082-14080) Score: 68.14
HMM Sc=41.32 Sec struct Sc=26.82
* | * | * | * | * | * | * | * | *
Seq: GCCGGGGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig597.trna7 (14020-13947) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (13986-13984) Score: 67.16
HMM Sc=47.63 Sec struct Sc=19.53
* | * | * | * | * | * | * |
Seq: GCGCCCATAGCTCAACTGGAtAGAGTGTTTGACTACGGATCAAAAGGtTAGGGGTTCGACTCCTCTTGGGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig597.trna8 (13925-13852) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (13891-13889) Score: 86.85
HMM Sc=64.84 Sec struct Sc=22.01
* | * | * | * | * | * | * |
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGCACTTGGTTTGGGACCAAGGGGtCGCAGGTTCGAATCCTGTCTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig597.trna9 (13794-13721) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (13760-13758) Score: 67.16
HMM Sc=47.63 Sec struct Sc=19.53
* | * | * | * | * | * | * |
Seq: GCGCCCATAGCTCAACTGGAtAGAGTGTTTGACTACGGATCAAAAGGtTAGGGGTTCGACTCCTCTTGGGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig604.trna1 (8020-7948) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (7987-7985) Score: 84.64
HMM Sc=67.45 Sec struct Sc=17.19
* | * | * | * | * | * | * |
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig605.trna1 (5-89) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (39-41) Score: 66.51
HMM Sc=41.20 Sec struct Sc=25.31
* | * | * | * | * | * | * | * |
Seq: GCCGGCGTGGCGGAATTGGCaGACGCGCTGGACTCAAAATCCAGTGCCCGTTGaGGGCGTGCCGGTTCGACCCCGGCCGCCGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig605.trna2 (151-223) Length: 73 bp
Type: His Anticodon: GTG at 34-36 (184-186) Score: 70.96
HMM Sc=47.66 Sec struct Sc=23.30
* | * | * | * | * | * | * |
Seq: GCGAATGTGGCGAAGTGGTtAACGCACCGGATTGTGGCTCCGGCATtCGTGGGTTCGATTCCCATCATTCGCC
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig605.trna3 (233-304) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (265-267) Score: 64.56
HMM Sc=36.74 Sec struct Sc=27.82
* | * | * | * | * | * | * |
Seq: TGGGGTATAGCCAAGCGGTAAGGCAAGGGACTTTGACTCCCTCATgCGTTGGTTCGAATCCAGCTACCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig605.trna4 (322-406) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (356-358) Score: 66.68
HMM Sc=41.45 Sec struct Sc=25.23
* | * | * | * | * | * | * | * |
Seq: GCCGGCGTGGCGGAATTGGCaGACGCGCTGGACTCAAAATCCAGTGTCCGTTGaGGACGTGCCGGTTCGACCCCGGCCGCCGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig613.trna1 (3253-3181) Length: 73 bp
Type: Lys Anticodon: CTT at 34-36 (3220-3218) Score: 86.12
HMM Sc=71.55 Sec struct Sc=14.57
* | * | * | * | * | * | * |
Seq: GGGCCGTTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGtCGCGGGTTCGAGCCCCTCACGGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
Contig617.trna1 (24073-24145) Length: 73 bp
Type: Gln Anticodon: CTG at 34-36 (24106-24108) Score: 72.94
HMM Sc=49.33 Sec struct Sc=23.61
* | * | * | * | * | * | * |
Seq: TGGGATGTAGCCAAACTGGTAAGGCACTTGACTCTGAATCAAGCAAtTGTAGGTTCGAACCCTGCCATCCCAA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig628.trna1 (23351-23427) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (23385-23387) Score: 80.34
HMM Sc=57.06 Sec struct Sc=23.28
* | * | * | * | * | * | * | *
Seq: GTCATAGTAGCTCAGCTGGAtAGAGCATCCGCCTTCTAAGCGGACGGtCGGGGGTTCGAATCCCTCCTGTGACGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig629.trna1 (22246-22318) Length: 73 bp
Type: Thr Anticodon: GGT at 34-36 (22279-22281) Score: 78.28
HMM Sc=58.35 Sec struct Sc=19.93
* | * | * | * | * | * | * |
Seq: GCCGCTTTAGCTCAGCTGGTAGAGCGCTTCCATGGTAAGGAAGAGGtCGCCGGTTCAAGCCCGGCAAGTGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig629.trna2 (22032-21959) Length: 74 bp
Type: Asn Anticodon: GTT at 35-37 (21998-21996) Score: 76.32
HMM Sc=53.17 Sec struct Sc=23.15
* | * | * | * | * | * | * |
Seq: TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGATGtCGTAGGTTCGAGTCCTACTGCCGGAG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig639.trna1 (14007-13937) Length: 71 bp
Type: Cys Anticodon: GCA at 33-35 (13975-13973) Score: 71.31
HMM Sc=44.14 Sec struct Sc=27.17
* | * | * | * | * | * | * |
Seq: GGCGGTATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTCAtCACCGGTTCAAATCCGGTTACCGCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig639.trna2 (13909-13824) Length: 86 bp
Type: Leu Anticodon: CAA at 35-37 (13875-13873) Score: 57.56
HMM Sc=33.12 Sec struct Sc=24.44
* | * | * | * | * | * | * | * | *
Seq: GCCGGCGTGGCGGAATTGGCaGACGCGCTGGACTCAAAATCCAGTGCCCGTTGaGGGCGTGCCGGTTCGACCcCCGGCCGCCGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>........<<<<<<<<<<<<.
Contig653.trna1 (52225-52152) Length: 74 bp
Type: Arg Anticodon: CCT at 35-37 (52191-52189) Score: 77.60
HMM Sc=50.56 Sec struct Sc=27.04
* | * | * | * | * | * | * |
Seq: GTTCCTGTAGCTCAGTAGGAtAGAGCAATCGCCTCCTAAGCGATAGGtCGCTGGTTCAATTCCAGTCAGGAACG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig653.trna2 (16855-16782) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (16821-16819) Score: 82.48
HMM Sc=52.98 Sec struct Sc=29.50
* | * | * | * | * | * | * |
Seq: GTACCCTTAGCTCAGTTGGTcAGAGCAGACGGCTCATAACCGTCCGGtCGTAGGTTCGAGTCCTACAGGGTACA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig654.trna1 (47877-47949) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (47910-47912) Score: 84.64
HMM Sc=67.45 Sec struct Sc=17.19
* | * | * | * | * | * | * |
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig654.trna2 (51377-51450) Length: 74 bp
Type: Asn Anticodon: GTT at 35-37 (51411-51413) Score: 76.32
HMM Sc=53.17 Sec struct Sc=23.15
* | * | * | * | * | * | * |
Seq: TCCGGCATAGCTCAGTTGGTaGTAGCGCATGACTGTTAATCATGATGtCGTAGGTTCGAGTCCTACTGCCGGAG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig655.trna1 (59892-59965) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (59926-59928) Score: 85.29
HMM Sc=55.89 Sec struct Sc=29.40
* | * | * | * | * | * | * |
Seq: GTACCTTTAGCTCAGTTGGTtAGAGCAGACGGCTCATAACCGTCCGGtCGTAGGTTCGAGTCCTACAAGGTACA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig656.trna1 (71122-71209) Length: 88 bp
Type: Ser Anticodon: CGA at 33-35 (71154-71156) Score: 69.81
HMM Sc=40.60 Sec struct Sc=29.21
* | * | * | * | * | * | * | * | *
Seq: GGAAGGTTGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCGGCTAAtACCGGCGCGCAGGTTCAAATCCTGTACCTTCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>......<<<<...>>>>>.......<<<<<<<<<<<<.
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