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Alignment last updated: 11/20/2008 16:50:07
AL845523.6 Mouse DNA sequence from clone RP23-290B1 on chromosome 2 Contains the 5' end of the Chn1 gene for chimerin (chimaerin) 1, a S100 calcium binding protein A11 (calizzarin) (S100a11) pseudogene, the 3' end of the Atf2 gene for activating transcription factor 2 and a CpG island, complete sequence [htgs_phase3]
Length: 51,413 bp
AL844581.7 Mouse DNA sequence from clone RP23-146O7 on chromosome 2 Contains the 5' end of the Atf2 gene for activating transcription factor 2, the Atp5g3 gene for ATP synthase H+ transporting mitochondrial F0 complex subunit c (subunit 9) isoform 3, a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene and two CpG islands, complete sequence [htgs_phase3]
Length: 207,639 bp
Join evaluation: Alignment count: 1
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Mismatches = 0, Gaps = 0, Length = 2000 Percent identity = 100% Score = 3965 bits (2000), Expect = 0 2 BAC and 4 Fosmid bridging clones. 2 BAC and 4 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AL845523.6 >49414 gaattcaaccctctccctctctgatgcgtgagtacacattacaagacaagataccctgtt 49473 AL844581.7 >1 ............................................................ 60 AL845523.6 >49474 ttcagaaggtggaaggagaaaaccaaatgtaactaactactttccaaacaaaaatctctt 49533 AL844581.7 >61 ............................................................ 120 AL845523.6 >49534 tcttgcattttcataagagaagtttactaagaagttatgaatgtaggttttcaacctatt 49593 AL844581.7 >121 ............................................................ 180 AL845523.6 >49594 caacaacagatacattaacacttctgtatgcttaaaattatataaaacaatcattaatca 49653 AL844581.7 >181 ............................................................ 240 AL845523.6 >49654 ctggtttgcatataatatctacataataattaaaagttaggattatccaattagtaataa 49713 AL844581.7 >241 ............................................................ 300 AL845523.6 >49714 gattttaaaattgtagattattgtcaattagatacaatgtaagagttaatttttttctaa 49773 AL844581.7 >301 ............................................................ 360 AL845523.6 >49774 ttttaacaaaatcatcacatatttccttttaagccatcacaatccagtgcagctttcttg 49833 AL844581.7 >361 ............................................................ 420 AL845523.6 >49834 cataatgttgaactcagtagcatctacaggaaattaagctaagtcagatgggaaccatag 49893 AL844581.7 >421 ............................................................ 480 AL845523.6 >49894 tggactaatccctacagcaatcactgatatataaatcccaagcatatttctgtatggttc 49953 AL844581.7 >481 ............................................................ 540 AL845523.6 >49954 caatttattccacagtgtgtttcactgtcctgtcaaaatgactagatatcaaataacaga 50013 AL844581.7 >541 ............................................................ 600 AL845523.6 >50014 gacttatatactcaaaacagacaaaaataagtattctaaatagatatggcaattgagaat 50073 AL844581.7 >601 ............................................................ 660 AL845523.6 >50074 agctatgtctacagaattttttaaattaaaaaatattgctcattttgatgaaactgctta 50133 AL844581.7 >661 ............................................................ 720 AL845523.6 >50134 caatagactacaagtaaagatggtggccattaagttttattgtaagtacctgaggagctg 50193 AL844581.7 >721 ............................................................ 780 AL845523.6 >50194 tttgcatctaacacaaaatgtttccttcttttgaattactgacattggcaaattaaaatg 50253 AL844581.7 >781 ............................................................ 840 AL845523.6 >50254 aagtggttacatatggttgaaacaatcttcacatttacaaatatcctgaaatatcactaa 50313 AL844581.7 >841 ............................................................ 900 AL845523.6 >50314 atcataaaaaagaaaacaaggccgtgggttatgtattatgaatgtagcctaatgcatccc 50373 AL844581.7 >901 ............................................................ 960 AL845523.6 >50374 cagctcttttatttgttatgaatttgtgtgtgaccgacaaacttggccatttactcagga 50433 AL844581.7 >961 ............................................................ 1020 AL845523.6 >50434 gtaacagctggttcccaaactgtgcatcttgtcaagaaggacatcagagaatgaaaaagc 50493 AL844581.7 >1021 ............................................................ 1080 AL845523.6 >50494 acaactaacctctaccaagctcacagaagaacctcattttaggagaggaacacatttaca 50553 AL844581.7 >1081 ............................................................ 1140 AL845523.6 >50554 aaggaatttataagcaaatcatttcaatacagttctgctttagcatttttatggctgtga 50613 AL844581.7 >1141 ............................................................ 1200 AL845523.6 >50614 caataccacataaaagctcaaaaccacacaaatacagtccaatgctgacattatctaaaa 50673 AL844581.7 >1201 ............................................................ 1260 AL845523.6 >50674 aggatatgatactagaaatggaaagtatatggttggatgaagatattgattaaaaagttc 50733 AL844581.7 >1261 ............................................................ 1320 AL845523.6 >50734 tcctcagtactaaatggggccaggaagggaagagctggctctggtaatgcaagacaacat 50793 AL844581.7 >1321 ............................................................ 1380 AL845523.6 >50794 ggtaccctgtgagatgaatgaccactgacagtaaacagtgcacttaaaatacgtttagct 50853 AL844581.7 >1381 ............................................................ 1440 AL845523.6 >50854 accaacctgtgagccatactaatgcctagaaaaaaaaaaaaagctagaaataggaaaact 50913 AL844581.7 >1441 ............................................................ 1500 AL845523.6 >50914 tttcttcctatcccagactataataatcttgcataaattctgatatttaatcttatgtac 50973 AL844581.7 >1501 ............................................................ 1560 AL845523.6 >50974 tagaactgcagcttgcacatttttctttttactggtagctcagctcactctggcagtctg 51033 AL844581.7 >1561 ............................................................ 1620 AL845523.6 >51034 tcactgatgtagcctacagctgtaggtaatggaacattactcactatgatagccagactt 51093 AL844581.7 >1621 ............................................................ 1680 AL845523.6 >51094 cttctgcatggcagttacagggcaatctttatgagccagaagaagctgtttcagctgggc 51153 AL844581.7 >1681 ............................................................ 1740 AL845523.6 >51154 cacttcatttctcagcagggtgacttcgctctggagaagaaacaactcacatgctttagc 51213 AL844581.7 >1741 ............................................................ 1800 AL845523.6 >51214 agcattagatagacacatattttactatttaaagaaagcaaggcttacaggatgaaaact 51273 AL844581.7 >1801 ............................................................ 1860 AL845523.6 >51274 ggatctctttggcagaacaataagggacatatgctgtttaaataaatttaatcagtatac 51333 AL844581.7 >1861 ............................................................ 1920 AL845523.6 >51334 actggtttgcttaagcatctatgtaagtcttttagtttaaaaactaaaatcatatgaata 51393 AL844581.7 >1921 ............................................................ 1980 AL845523.6 >51394 ccataactgggtagccttgc 51413 AL844581.7 >1981 .................... 2000
Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time |
A | 51413 | 2001 | + | + | chenhc | Taxid 10090 chrom 2 Reference assembly | 2008-11-20 16:50:07.536 |
Id | Type | Date | Whodid | Comment |
2373 | ImportOldDb | 09/02/2005 10:54:00 | f_old_db | |
2374 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
166204 | CreateSwitchPt | 11/20/2008 16:50:07 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
C3H-185L6 | AL844581.7 | 100% | pos 115495 (F+) | |||
C3H-217O1 | AL844581.7 | 100% | pos 107465 (F-) | |||
C3H-239I4 | AL844581.7 | 99.04% | pos 24003 (F-) | |||
C3H-43D6 | AL845523.6 | 99.06% | pos 44930 (R+) | |||
C3H-51O9 | AL844581.7 | 100% | pos 190534 (F+) | |||
CH29-144N5 | AL844581.7 | 99.14% | pos 120755 (F+) | |||
CH29-15C8 | AL844581.7 | 99.75% | pos 179134 (R-) | |||
CH29-17B6 | AL844581.7 | 99.07% | pos 116506 (F+) | |||
CH29-36D1 | AL845523.6 | 100% | pos 6396 (R-) | |||
CH29-496L13 | AL845523.6 | 99.23% | pos 36010 (F-) | |||
CH29-508F8 | AL844581.7 | 99.51% | pos 95319 (F-) | |||
CH29-510C9 | AL844581.7 | 99.31% | pos 61018 (F-) | |||
CH29-511E4 | AL845523.6 | 100% | pos 35705 (F-) | |||
CH29-517E17 | AL844581.7 | 99.32% | pos 14176 (R+) | |||
CH29-558K5 | AL844581.7 | 99.15% | pos 151922 (F-) | |||
CH29-558M5 | AL845523.6 | 99.03% | pos 38628 (R+) | AL844581.7 | 99.05% | pos 151976 (F-) |
CH29-589J19 | AL844581.7 | 100% | pos 39577 (R-) | |||
CH29-608K5 | AL844581.7 | 99.44% | pos 154477 (F-) | |||
CH29-613K19 | AL845523.6 | 99.75% | pos 35998 (F-) | |||
CH29-72H16 | AL844581.7 | 99.86% | pos 50534 (F+) | |||
CH29-92F4 | AL845523.6 | 99.25% | pos 44500 (F-) | |||
RP23-146J19 | AL844581.7 | 99.03% | pos 187588 (R-) | |||
RP23-345O11 | AL844581.7 | 99.06% | pos 61107 (F+) | |||
RP23-92L8 | AL845523.6 | 99.09% | pos 38620 (F+) | |||
RP24-145J21 | AL844581.7 | 99.17% | pos 129222 (R-) | |||
RP24-168H18 | AL844581.7 | 99.66% | pos 25196 (R-) | |||
RP24-186F20 | AL844581.7 | 99.77% | pos 54615 (F+) | |||
RP24-298C19 | AL844581.7 | 99.58% | pos 58431 (R+) | |||
RP24-326D18 | AL844581.7 | 99.6% | pos 16372 (R+) | |||
RP24-332H1 | AL844581.7 | 99.33% | pos 142953 (F-) | |||
RP24-369A22 | AL845523.6 | 99.01% | pos 16499 (R+) | AL844581.7 | 99.18% | pos 151407 (F-) |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
WI1-1164F22 | AL845523.6 | 99.39% | pos 37089 (R+) | AL844581.7 | 100% | pos 27046 (F-) |
WI1-1227B3 | AL844581.7 | 100% | pos 71471 (R-) | |||
WI1-1248A16 | AL844581.7 | 99.82% | pos 171507 (F+) | |||
WI1-125F15 | AL844581.7 | 99.74% | pos 4077 (R-) | AL845523.6 | 100% | pos 18478 (F+) |
WI1-1266O14 | AL844581.7 | 100% | pos 171091 (R+) | AL844581.7 | 100% | pos 207394 (F-) |
WI1-1506I14 | AL844581.7 | 100% | pos 149413 (R+) | AL844581.7 | 99.71% | pos 191404 (F-) |
WI1-1662P21 | AL844581.7 | 100% | pos 190241 (F+) | |||
WI1-1775O11 | AL845523.6 | 100% | pos 34056 (R+) | AL844581.7 | 100% | pos 27119 (F-) |
WI1-1920K11 | AL844581.7 | 100% | pos 154552 (R+) | AL844581.7 | 99.73% | pos 197574 (F-) |
WI1-2090D12 | AL844581.7 | 99.39% | pos 79188 (R-) | AL844581.7 | 100% | pos 34973 (F+) |
WI1-2105A1 | AL844581.7 | 99.82% | pos 187812 (R-) | AL844581.7 | 100% | pos 147819 (F+) |
WI1-2135N23 | AL845523.6 | 100% | pos 46684 (F+) | |||
WI1-2147O1 | AL844581.7 | 100% | pos 97848 (R+) | AL844581.7 | 100% | pos 133509 (F-) |
WI1-2221I11 | AL845523.6 | 100% | pos 148 (R+) | AL845523.6 | 100% | pos 40790 (F-) |
WI1-2388M23 | AL844581.7 | 99.78% | pos 204258 (R-) | AL844581.7 | 100% | pos 164210 (F+) |
WI1-2599F20 | AL844581.7 | 99.55% | pos 135780 (R-) | AL844581.7 | 99.8% | pos 96592 (F+) |
WI1-2638I12 | AL844581.7 | 99.53% | pos 59326 (R+) | AL844581.7 | 99.36% | pos 96814 (F-) |
WI1-2658P23 | AL844581.7 | 99.54% | pos 196618 (F+) | |||
WI1-2691E21 | AL844581.7 | 99.77% | pos 147170 (R+) | AL844581.7 | 99.81% | pos 185367 (F-) |
WI1-2844L15 | AL844581.7 | 100% | pos 71415 (R+) | AL844581.7 | 99.84% | pos 111188 (F-) |
WI1-2854P13 | AL844581.7 | 99.84% | pos 184143 (R-) | AL844581.7 | 100% | pos 146311 (F+) |
WI1-2885P1 | AL844581.7 | 100% | pos 163088 (R+) | |||
WI1-397N10 | AL844581.7 | 99.33% | pos 9450 (R+) | AL844581.7 | 100% | pos 46738 (F-) |
WI1-532A20 | AL845523.6 | 100% | pos 17899 (R+) | AL844581.7 | 100% | pos 4634 (F-) |
WI1-795M23 | AL844581.7 | 100% | pos 178947 (R+) | |||
WI1-894D6 | AL844581.7 | 99.84% | pos 175676 (F+) | |||
WI1-908N16 | AL845523.6 | 99.79% | pos 26203 (F-) | |||
WI1-942O7 | AL844581.7 | 99.02% | pos 48417 (R+) |