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Actinobacillus actinomycetemcomitans Search Results

Record: 1 of 1  
MiniMap IGR0740 IGR0733 IGR0738 IGR0737 IGR0741 IGR0739 IGR0742 IGR0745 IGR0744 IGR0736 IGR0743 IGR0734 IGR0732 IGR0735 AA01135 AA01134 AA01143 AA01133 AA01136 AA01146 AA01147 ynfI, - AA01141 dmsB, - AA01138 AA01148 dmsC, - AA01140 glyQ, - AA01145 glyS, - AA01149 dmsA, - AA01137 AA01135 AA01134 AA01143 AA01133 AA01136 AA01146 AA01147 ynfI, - AA01141 dmsB, - AA01138 AA01148 dmsC, - AA01140 glyQ, - AA01145 glyS, - AA01149 dmsA, - AA01137 AA01135 AA01143 AA01133 AA01134 AA01136 AA01147 ynfI, - AA01141 dmsB, - AA01138 dmsC, - AA01140 glyQ, - AA01145 glyS, - AA01149 dmsA, - AA01137 AA01146 AA01148


Gene ID:AA01138

DNA Molecule Name:
1  

GenBank ID:


Gene Name:
dmsB  

Definition:
anaerobic dimethyl sulfoxide reductase, chain B

Cellular Location:
Periplasm, Inner membrane [Evidence]

Gene Start:
781131

Gene Stop:
781745

Gene Length:
615

Molecular Weight*:
22744

pI*:


Net Charge*:


EC:
1.8.-.-  

Functional Class:
Energy metabolism; Anaerobic respiration  

Gene Ontology:
Biological process
  GO:0006118    electron transport

Molecular function
  GO:0009055    electron carrier activity
  GO:0051536    iron-sulfur cluster binding


Pathway: pathway table

Secondary Evidence:
Loosmore,S.M., Shortreed,J.M., Coleman,D.C., England,D.M. and
Klein,M.H.
Sequences of the genes encoding the A, B and C subunits of the
Haemophilus influenzae dimethylsulfoxide reductase complex
Gene 169 (1), 137-138 (1996)
PubMed: 8635740

Trieber,C.A., Rothery,R.A. and Weiner,J.H.
Multiple pathways of electron transfer in dimethyl sulfoxide reductase of Escherichia coli
J. Biol. Chem. 269 (10), 7103-7109 (1994)
PubMed: 8125918

Bilous,P.T., Cole,S.T., Anderson,W.F. and Weiner,J.H.
Nucleotide sequence of the dmsABC operon encoding the anaerobic
dimethylsulphoxide reductase of Escherichia coli
Mol. Microbiol. 2 (6), 785-795 (1988)
PubMed: 3062312

Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|145640720|ref|ZP_01796303.1|  anaerobic dimethyl sulfoxid...   378   e-103
 gi|68249608|ref|YP_248720.1|  anaerobic dimethyl sulfoxide r...   377   e-103
 gi|42630137|ref|ZP_00155681.1|  COG0437: Fe-S-cluster-contai...   377   e-103
 gi|16272978|ref|NP_439205.1|  anaerobic dimethyl sulfoxide r...   375   e-103
 gi|1353257|gb|AAB06234.1|  dimethyl sulphoxide reductase sub...   374   e-102
 gi|152979186|ref|YP_001344815.1|  Dimethylsulfoxide reductas...   350   4e-95
 gi|53728930|ref|ZP_00134519.2|  COG0437: Fe-S-cluster-contai...   347   2e-94
 gi|15603620|ref|NP_246694.1|  DmsB [Pasteurella multocida su...   330   3e-89
 gi|77975925|ref|ZP_00831458.1|  COG0437: Fe-S-cluster-contai...   315   1e-84
 gi|77958698|ref|ZP_00822727.1|  COG0437: Fe-S-cluster-contai...   312   8e-84


InterPro Summary:  InterProScan

InterPro
IPR001450
Domain
4Fe-4S ferredoxin, iron-sulfur binding
PR00353 [92-103]T 0.28 PR00353 4FE4SFRDOXIN[140-151]T 0.28 PR00353 4FE4SFRDOXIN 4FE4SFRDOXIN
PF00037 [6-29]T 0.012 PF00037 Fer4[92-115]T 8.7e-07 PF00037 Fer4 Fer4
PS00198 [99-110]T 8e-5 PS00198 4FE4S_FERREDOXIN 4FE4S_FERREDOXIN
InterPro
IPR014297
Family
Dimethylsulfoxide reductase, chain B
TIGR02951 [3-163]T 3.5e-113 TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, cha DMSO_dmsB: dimethylsulfoxide reductase, cha
noIPR
unintegrated
unintegrated
G3DSA:3.30.70.20 [56-128]T 5e-24 G3DSA:3.30.70.20 no description no description
PTHR11938 [7-161]T 4.5e-37 PTHR11938 FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE
PTHR11938:SF10 [7-161]T 4.5e-37 PTHR11938:SF10 MOLYBDOPTERIN OXIDOREDUCTASE MOLYBDOPTERIN OXIDOREDUCTASE


COGS Summary:  COGS Search
No hits to the COGs database.
Blocks Summary:  Blocks Search

Significant hit ( 3.2e-07) to 2/2 blocks of the PR00353 family, which is described as "4Fe-4S ferredoxin signature". Prints database entry for PR00353.
    PR00353A    6-17    0.069
    PR00353B    74-85    0.0021
    PR00353B    104-115    1

 ProDom Summary:  Protein Domain Search

Residues 4 to 36 match (2e-08) PD:PD007945 which is described as COMPLETE PROTEOME IRON-SULFUR REDUCTASE SUBUNIT B CHAIN SULFOXIDE OXIDOREDUCTASE MOLYBDOPTERIN

Paralogs:  Local Blast Search

AA01138 is paralogously related to AA02677 (formate dehydrogenase, beta subunit) (8e-25), AA00044 (formate dependent nitrite reductase, Fe-S protein/ anaerobic DMSO reductase B) (2e-22) and AA02683 (hydrogenase 4 Fe-S subunit) (1e-12).


Pfam Summary:  Pfam Search

Residues 92 to 115 (E-value = 7.7e-07) place AA01138 in the Fer4 family which is described as 4Fe-4S binding domain (PF00037)


 Top PDB Hits:


Gene Protein Sequence:
MEQYGFYFDSDRCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGNWSQQP
DGCWLQNVFAYYMSISCNHCADPACTKVCPTGAMQKNADGFVIVNEEICI
GCRYCHMACPYDAPQFDAEKGHMTKCDGCYSRIKAGQKPICVDACPLRAL
DFAPIKELRARYGEQVSIAPLPPAEVTHPNLVVKPNKNARLSGDTNGFLG
NPGEV

Gene Nucleotide Sequence:  Sequence Viewer
ATGGAACAATATGGTTTTTATTTTGATTCGGATCGCTGTACAGGCTGTAA
AACTTGCGAATTAGCCTGTAAAGATTACAAAGATTTAGGCACGGAGGTAA
ATTTCCGTCGTATTTATGAATACACCGGTGGCAACTGGAGCCAACAGCCG
GACGGTTGTTGGCTCCAAAACGTGTTTGCTTATTATATGTCCATTTCATG
CAATCATTGCGCCGATCCGGCTTGTACCAAGGTTTGCCCGACAGGCGCCA
TGCAAAAAAATGCAGACGGTTTTGTGATTGTGAATGAAGAAATCTGCATT
GGCTGTCGCTATTGCCACATGGCGTGTCCGTATGACGCGCCGCAATTCGA
CGCGGAAAAAGGTCACATGACCAAATGTGACGGTTGCTATTCGCGTATTA
AAGCAGGGCAAAAACCGATTTGCGTGGATGCCTGTCCATTGCGCGCTCTT
GATTTTGCACCCATTAAAGAATTGCGCGCTAGGTATGGTGAACAGGTCTC
TATTGCACCCTTGCCTCCGGCAGAAGTGACCCATCCGAATTTGGTCGTGA
AACCAAACAAAAACGCCCGTCTAAGCGGCGATACCAACGGGTTCTTAGGT
AACCCGGGAGAGGTG

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