Reference SNP(refSNP) Cluster Report: rs2741885

Reference SNP(refSNP) Cluster Report: rs2741885

refSNP ID: rs2741885
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	100/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_002261.2:c.588-164G>C
NM_007333.2:c.588-164G>C
NT_009714.16:g.3327531C>G

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss3869904 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2741885 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss3869904	SC_JCM\|AJ001685.1_4644		fwd/B	C/G	tgaaacatatcccccgtggatgaaggggga	tactgtattgagtgttcagaataatgactt	09/25/01	10/10/03	100	Genomic			unknown

Fasta sequence (Legend)

 ACAATAGTAG TGCTGTTggt atattgctta caatttttta ttagtagtta ttgttgtcaa
 tctcttattg tgcctaattt ttaaattaaa ctttatcaca gttatgaatg tgtagagaaa
 acataatctc tctataggtt ctgtactatt tcagacattc agtggggtct tgaaacatat
 cccccgtgga tgaaggggga
 S
 tactgTATTG AGTGTTCAGA ATAATGACTT TTAGTAATAG CATATGAAAA ATTTAATTAC
 CCTTTTTCAT AAAATTATTT TCTTACAGTA CATGGAAAAT GCTTTTGTCT CATGGGTCAT
 TTGCATAAAA TGTAACAGAA TTATGGATTT TTCTCCATTA CAGGATAAAA GACTCAGATC
 ATGCTGAACG TAACTGTGCA

GeneView

GeneView via analysis of contig annotation: KLRC3 killer cell lectin-like receptor subfamily C, member 3

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_009714->NM_002261

function

reference

NT_009714->NM_007333

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_009714->NM_002261->NP_002252	3327531	reverse	intron

reference	NT_009714->NM_007333->NP_031359	3327531	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs2741885 maps exactly once on NCBI human chromosome 12

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
12	NW_001838052.1	950465	10310982	minus	C	alt_assembly_8	HuRef	HuRef	view	200
12	NT_009714.16	3327531	10459824	minus	C	ref_assembly	reference	reference	view	200
12	NW_925328.1	845105	15730421	minus	C	alt_assembly_1	Celera	Celera	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
AJ001685 AC068775

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP, NCBI

UNKNOWN

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Revised: May 25, 2006 1:38 PM .