NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs12720390          
refSNP ID: rs12720390
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:121/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_000797.2:c.285+343G>A
NT_035113.6:g.577932G>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss20399290 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs12720390 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss20399290RMOYZIS|DRD4-142426fwd/TA/Ggtcccctccgtagctggatttcacctccaggcagccagctggacagacaggcagatgcag02/24/0403/04/04121Genomic100 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs12720390|allelePos=51|totalLen=101|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=121
 AGGCGACTTT GTCAAGCCCA GTCCCCTCCG TAGCTGGATT TCACCTCCAG
 R
 GCAGCCAGCT GGACAGACAG GCAGATGCAG GCTCAGCCCC CTGGCTGCCG

  GeneView back to top
GeneView via analysis of contig annotation: DRD4 dopamine receptor D4
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label
Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_035113->NM_000797
svfunction
"
Group
label
Contig-->mRNA-->ProteinContig
position
mRNA
orientation
mRNA
pos
FunctiondbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
referenceNT_035113->NM_000797->NP_000788577932forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs12720390 maps exactly once on NCBI human chromosome 11
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
11NW_001838016.1278994453140plusGalt_assembly_8HuRefHuRefview50
11NT_035113.6577932627932plusGref_assemblyreferencereferenceview50
11NW_924962.1282805703049plusGalt_assembly_1CeleraCeleraview50

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
DRD4-142426
dbSNP Blast Analysis
GenBank HTGS Finished:
AP006284.2

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION:
FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .