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J Bacteriol. 1995 August; 177(15): 4540–4543.
PMCID: PMC177211
Molecular cloning of the pyrE gene from the extreme thermophile Thermus flavus.
V Vonstein, S P Johnson, H Yu, M J Casadaban, N C Pagratis, J M Weber, and D C Demirjian
ThermoGen, Inc., Chicago, Illinois 60612, USA.
Abstract
Mutants of the extreme thermophile Thermus flavus in the pyrimidine biosynthetic pathway (Pyr-) were isolated by resistance to 5-fluoroorotic acid. The pyrE gene, which codes for the orotate phosphoribosyltransferase, was cloned by recombination with one of the isolated Pyr- T. flavus mutant strains. It was subcloned by complementation of an Escherichia coli pyrE mutant strain and was sequenced. The deduced polypeptide sequence extends over 183 amino acids. Several independent Pyr- mutations were mapped within the pyrE locus by recombination with fragments of the cloned gene.
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Selected References
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  • Bergès, T; Barreau, C. Isolation of uridine auxotrophs from Trichoderma reesei and efficient transformation with the cloned ura3 and ura5 genes. Curr Genet. 1991 May;19(5):359–365. [PubMed]
  • Casadaban, MJ; Martinez-Arias, A; Shapira, SK; Chou, J. Beta-galactosidase gene fusions for analyzing gene expression in escherichia coli and yeast. Methods Enzymol. 1983;100:293–308. [PubMed]
  • Cottarel, G; Beach, D; Deuschle, U. Two new multi-purpose multicopy Schizosaccharomyces pombe shuttle vectors, pSP1 and pSP2. Curr Genet. 1993 23(5-6):547–548.May–Jun; [PubMed]
  • Dekker, K; Yamagata, H; Sakaguchi, K; Udaka, S. Xylose (glucose) isomerase gene from the thermophile Thermus thermophilus: cloning, sequencing, and comparison with other thermostable xylose isomerases. J Bacteriol. 1991 May;173(10):3078–3083. [PubMed]
  • Gibson, TJ; Rosenthal, A; Waterston, RH. Lorist6, a cosmid vector with BamHI, NotI, ScaI and HindIII cloning sites and altered neomycin phosphotransferase gene expression. Gene. 1987;53(2-3):283–286. [PubMed]
  • Hershey, HV; Taylor, MW. Nucleotide sequence and deduced amino acid sequence of Escherichia coli adenine phosphoribosyltransferase and comparison with other analogous enzymes. Gene. 1986;43(3):287–293. [PubMed]
  • Ishida, M; Oshima, T. Overexpression of genes of an extreme thermophile Thermus thermophilus, in Escherichia coli cells. J Bacteriol. 1994 May;176(9):2767–2770. [PubMed]
  • Koyama, Y; Arikawa, Y; Furukawa, K. A plasmid vector for an extreme thermophile, Thermus thermophilus. FEMS Microbiol Lett. 1990 Oct;60(1-2):97–101. [PubMed]
  • Koyama, Y; Furukawa, K. Cloning and sequence analysis of tryptophan synthetase genes of an extreme thermophile, Thermus thermophilus HB27: plasmid transfer from replica-plated Escherichia coli recombinant colonies to competent T. thermophilus cells. J Bacteriol. 1990 Jun;172(6):3490–3495. [PubMed]
  • Koyama, Y; Hoshino, T; Tomizuka, N; Furukawa, K. Genetic transformation of the extreme thermophile Thermus thermophilus and of other Thermus spp. J Bacteriol. 1986 Apr;166(1):338–340. [PubMed]
  • Koyama, Y; Okamoto, S; Furukawa, K. Cloning of alpha- and beta-galactosidase genes from an extreme thermophile, Thermus strain T2, and their expression in Thermus thermophilus HB27. Appl Environ Microbiol. 1990 Jul;56(7):2251–2254. [PubMed]
  • Kwon-Chung, KJ; Varma, A; Edman, JC; Bennett, JE. Selection of ura5 and ura3 mutants from the two varieties of Cryptococcus neoformans on 5-fluoroorotic acid medium. J Med Vet Mycol. 1992;30(1):61–69. [PubMed]
  • Lasa, I; Castón, JR; Fernández-Herrero, LA; de Pedro, MA; Berenguer, J. Insertional mutagenesis in the extreme thermophilic eubacteria Thermus thermophilus HB8. Mol Microbiol. 1992 Jun;6(11):1555–1564. [PubMed]
  • Lasa, I; de Grado, M; de Pedro, MA; Berenguer, J. Development of Thermus-Escherichia shuttle vectors and their use for expression of the Clostridium thermocellum celA gene in Thermus thermophilus. J Bacteriol. 1992 Oct;174(20):6424–6431. [PubMed]
  • Lauer, G; Rudd, EA; McKay, DL; Ally, A; Ally, D; Backman, KC. Cloning, nucleotide sequence, and engineered expression of Thermus thermophilus DNA ligase, a homolog of Escherichia coli DNA ligase. J Bacteriol. 1991 Aug;173(16):5047–5053. [PubMed]
  • Liao, H; McKenzie, T; Hageman, R. Isolation of a thermostable enzyme variant by cloning and selection in a thermophile. Proc Natl Acad Sci U S A. 1986 Feb;83(3):576–580. [PubMed]
  • Mather, MW; Fee, JA. Development of plasmid cloning vectors for Thermus thermophilus HB8: expression of a heterologous, plasmid-borne kanamycin nucleotidyltransferase gene. Appl Environ Microbiol. 1992 Jan;58(1):421–425. [PubMed]
  • Matsumura, M; Aiba, S. Screening for thermostable mutant of kanamycin nucleotidyltransferase by the use of a transformation system for a thermophile, Bacillus stearothermophilus. J Biol Chem. 1985 Dec 5;260(28):15298–15303. [PubMed]
  • Nicholls, DJ; Sundaram, TK; Atkinson, T; Minton, NP. Cloning and nucleotide sequences of the mdh and sucD genes from Thermus aquaticus B. FEMS Microbiol Lett. 1990 Jun 15;58(1):7–14. [PubMed]
  • Nishiyama, M; Horinouchi, S; Beppu, T. Characterization of an operon encoding succinyl-CoA synthetase and malate dehydrogenase from Thermus flavus AT-62 and its expression in Escherichia coli. Mol Gen Genet. 1991 Apr;226(1-2):1–9. [PubMed]
  • Nureki, O; Muramatsu, T; Suzuki, K; Kohda, D; Matsuzawa, H; Ohta, T; Miyazawa, T; Yokoyama, S. Methionyl-tRNA synthetase gene from an extreme thermophile, Thermus thermophilus HB8. Molecular cloning, primary-structure analysis, expression in Escherichia coli, and site-directed mutagenesis. J Biol Chem. 1991 Feb 15;266(5):3268–3277. [PubMed]
  • Park, HJ; Kreutzer, R; Reiser, CO; Sprinzl, M. Molecular cloning and nucleotide sequence of the gene encoding a H2O2-forming NADH oxidase from the extreme thermophilic Thermus thermophilus HB8 and its expression in Escherichia coli. Eur J Biochem. 1992 May 1;205(3):875–879. [PubMed]
  • Sanger, F; Nicklen, S; Coulson, AR. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463–5467. [PubMed]
  • Silar, P; Thiele, DJ. New shuttle vectors for direct cloning in Saccharomyces cerevisiae. Gene. 1991 Jul 31;104(1):99–102. [PubMed]
  • Weber, JM; Johnson, SP; Vonstein, V; Casadaban, MJ; Demirjian, DC. A chromosome integration system for stable gene transfer into Thermus flavus. Biotechnology (N Y). 1995 Mar;13(3):271–275. [PubMed]
  • Yeh, MF; Trela, JM. Purification and characterization of a repressible alkaline phosphatase from Thermus aquaticus. J Biol Chem. 1976 May 25;251(10):3134–3139. [PubMed]
  • Zhou, P; Szczypka, MS; Young, R; Thiele, DJ. A system for gene cloning and manipulation in the yeast Candida glabrata. Gene. 1994 May 3;142(1):135–140. [PubMed]