Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 5 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 1 |
| Leu | 6 |
| Lys | 3 |
| Met | 2 |
| Phe | 1 |
| Pro | 1 |
| Pseudo | 4 |
| Ser | 4 |
| Thr | 4 |
| Trp | 0 |
| Tyr | 0 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig239 | 6 | 458962 ..459033 | 0..0 | 70.18 | 47.69 |
| Ala | GGC | Contig239 | 11 | 1080017..1080088 | 0..0 | 70.95 | 47.20 |
| Ala | TGC | Contig239 | 29 | 1822584..1822512 | 0..0 | 78.18 | 57.41 |
| Arg | CCG | Contig239 | 39 | 1120975..1120904 | 0..0 | 47.40 | 17.62 |
| Arg | CCT | Contig239 | 31 | 1695747..1695673 | 0..0 | 62.62 | 36.79 |
| Arg | GCG | Contig239 | 14 | 1460063..1460134 | 0..0 | 49.13 | 18.38 |
| Arg | TCG | Contig239 | 42 | 538909 ..538838 | 0..0 | 51.13 | 20.13 |
| Arg | TCT | Contig239 | 21 | 2001006..2001080 | 0..0 | 66.20 | 48.38 |
| Asn | GTT | Contig239 | 24 | 2080626..2080698 | 0..0 | 82.14 | 55.63 |
| Asp | GTC | Contig239 | 33 | 1674181..1674106 | 0..0 | 56.37 | 24.70 |
| Cys | GCA | Contig239 | 30 | 1819352..1819281 | 0..0 | 50.27 | 19.54 |
| Gln | CTG | Contig239 | 43 | 528505 ..528433 | 0..0 | 48.42 | 18.16 |
| Gln | TTG | Contig239 | 7 | 740745 ..740820 | 0..0 | 54.96 | 32.82 |
| Glu | CTC | Contig239 | 16 | 1698223..1698297 | 0..0 | 49.99 | 17.88 |
| Glu | TTC | Contig239 | 17 | 1737261..1737333 | 0..0 | 56.96 | 30.04 |
| Gly | CCC | Contig239 | 4 | 416281 ..416351 | 0..0 | 58.05 | 27.27 |
| Gly | GCC | Contig239 | 40 | 959094 ..959020 | 0..0 | 63.83 | 30.37 |
| Gly | TCC | Contig239 | 25 | 2242351..2242421 | 0..0 | 63.59 | 31.23 |
| His | GTG | Contig239 | 45 | 448293 ..448221 | 0..0 | 46.78 | 14.94 |
| Ile | GAT | Contig239 | 8 | 791211 ..791283 | 0..0 | 76.98 | 45.88 |
| Leu | CAA | Contig239 | 28 | 2113035..2112953 | 0..0 | 54.56 | 17.76 |
| Leu | CAG | Contig239 | 13 | 1232468..1232552 | 0..0 | 53.82 | 22.37 |
| Leu | GAG | Contig239 | 15 | 1528671..1528755 | 0..0 | 50.61 | 16.00 |
| Leu | GAG | Contig239 | 35 | 1647663..1647579 | 0..0 | 50.61 | 16.00 |
| Leu | TAA | Contig239 | 9 | 840590 ..840674 | 0..0 | 57.77 | 27.59 |
| Leu | TAG | Contig239 | 38 | 1153938..1153854 | 0..0 | 55.02 | 26.16 |
| Lys | CTT | Contig239 | 46 | 378766 ..378694 | 0..0 | 81.87 | 62.76 |
| Lys | TTT | Contig239 | 2 | 273652 ..273725 | 0..0 | 81.29 | 67.98 |
| Lys | TTT | Contig239 | 3 | 289372 ..289445 | 0..0 | 81.29 | 67.98 |
| Met | CAT | Contig239 | 1 | 207524 ..207598 | 0..0 | 57.60 | 24.69 |
| Met | CAT | Contig239 | 27 | 2415125..2415199 | 0..0 | 80.73 | 66.43 |
| Phe | GAA | Contig239 | 22 | 2005461..2005534 | 0..0 | 75.34 | 54.73 |
| Pro | TGG | Contig239 | 10 | 1019514..1019591 | 0..0 | 49.87 | 16.24 |
| Pseudo | ??? | Contig239 | 34 | 1650317..1650208 | 0..0 | 25.18 | -1.18 |
| Pseudo | CGG | Contig239 | 19 | 1796583..1796656 | 0..0 | 34.45 | 5.94 |
| Pseudo | GGG | Contig239 | 47 | 270542 ..270466 | 0..0 | 37.59 | -2.40 |
| Pseudo | GTA | Contig239 | 32 | 1674306..1674200 | 0..0 | 26.90 | -7.17 |
| Ser | CGA | Contig239 | 48 | 248553 ..248469 | 0..0 | 55.38 | 29.58 |
| Ser | GCT | Contig239 | 18 | 1792799..1792883 | 0..0 | 60.54 | 30.62 |
| Ser | GGA | Contig239 | 44 | 520620 ..520534 | 0..0 | 60.46 | 27.38 |
| Ser | TGA | Contig239 | 37 | 1436443..1436359 | 0..0 | 58.29 | 30.85 |
| Thr | CGT | Contig239 | 5 | 424431 ..424502 | 0..0 | 79.58 | 57.46 |
| Thr | GGT | Contig239 | 12 | 1125032..1125104 | 0..0 | 79.93 | 51.61 |
| Thr | GGT | Contig239 | 23 | 2005657..2005729 | 0..0 | 58.36 | 41.94 |
| Thr | TGT | Contig239 | 36 | 1643939..1643867 | 0..0 | 78.72 | 52.54 |
| Val | CAC | Contig239 | 26 | 2242424..2242497 | 0..0 | 67.43 | 35.81 |
| Val | GAC | Contig239 | 20 | 1847904..1847980 | 0..0 | 68.67 | 37.76 |
| Val | TAC | Contig239 | 41 | 638194 ..638121 | 0..0 | 68.55 | 40.19 |
tRNA Models
Contig239.trna1 (207524-207598) Length: 75 bp
Type: Met Anticodon: CAT at 36-38 (207559-207561) Score: 57.60
HMM Sc=24.69 Sec struct Sc=32.91
* | * | * | * | * | * | * |
Seq: AGCGAGGTGGGGTAGTCaGGAtATCCCGGCGGGCTCATAACCCGTAGAtCGATGGTTCAAATCCATCCCTCGCTA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna2 (273652-273725) Length: 74 bp
Type: Lys Anticodon: TTT at 35-37 (273686-273688) Score: 81.29
HMM Sc=67.98 Sec struct Sc=13.31
* | * | * | * | * | * | * |
Seq: GGGTCTATAGCTCAGTTaGGTAGAGCGCCTGGCTTTTAACCAGGTGGtCGGGGGTTCAAATCCCCTTGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna3 (289372-289445) Length: 74 bp
Type: Lys Anticodon: TTT at 35-37 (289406-289408) Score: 81.29
HMM Sc=67.98 Sec struct Sc=13.31
* | * | * | * | * | * | * |
Seq: GGGTCTATAGCTCAGTTaGGTAGAGCGCCTGGCTTTTAACCAGGTGGtCGGGGGTTCAAATCCCCTTGGGCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna4 (416281-416351) Length: 71 bp
Type: Gly Anticodon: CCC at 33-35 (416313-416315) Score: 58.05
HMM Sc=27.27 Sec struct Sc=30.78
* | * | * | * | * | * | * |
Seq: GCGATAGTAGTCTAATGGTAGGACAGGGGCTTCCCAAGCCTCTAGTCCGGGTTCGATCCCCGGCTATCGCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna5 (424431-424502) Length: 72 bp
Type: Thr Anticodon: CGT at 33-35 (424463-424465) Score: 79.58
HMM Sc=57.46 Sec struct Sc=22.12
* | * | * | * | * | * | * |
Seq: GCCGCTGTGGCTTAGCGGTATAGCGGCTGATTCGTAATCAGCAGGtCGGGGGTTCGATTCCCCCCAGCGGCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna6 (458962-459033) Length: 72 bp
Type: Ala Anticodon: CGC at 33-35 (458994-458996) Score: 70.18
HMM Sc=47.69 Sec struct Sc=22.49
* | * | * | * | * | * | * |
Seq: GGGCTCGTAGATCAGGGGTAGATCGCTACGTTCGCAACGTAGAGGcCGCGGGTTCAAATCCCGCCGGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna7 (740745-740820) Length: 76 bp
Type: Gln Anticodon: TTG at 35-37 (740779-740781) Score: 54.96
HMM Sc=32.82 Sec struct Sc=22.14
* | * | * | * | * | * | * | *
Seq: ACCCCCGTAGTGTAGTGGTcaATCATGCAGGACTTTGGATCCGGCGACGGCGGTTCGAATCCGCCCGGGGGTACTA
Str: >>>>>>>..>>>...........<<<.>.>>>.......<<<.<....>>>>>.......<<<<<<<<<<<<....
Contig239.trna8 (791211-791283) Length: 73 bp
Type: Ile Anticodon: GAT at 34-36 (791244-791246) Score: 76.98
HMM Sc=45.88 Sec struct Sc=31.10
* | * | * | * | * | * | * |
Seq: GGGCCCGTAGCATAGCTGGTGGTGCACCCGGCTGATAACCGGGAGGtCATGCGTTCGAATCGCATCGGGCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna9 (840590-840674) Length: 85 bp
Type: Leu Anticodon: TAA at 37-39 (840626-840628) Score: 57.77
HMM Sc=27.59 Sec struct Sc=30.18
* | * | * | * | * | * | * | * |
Seq: GCGAGGGTAGCCAAGCCcGGCcaACGGCGCCGGACTTAAGATCCGGTCCCGAAGGGGTcCGTGGGTTCGAATCCCACCCCTCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig239.trna10 (1019514-1019591) Length: 78 bp
Type: Pro Anticodon: TGG at 37-39 (1019550-1019552) Score: 49.87
HMM Sc=16.24 Sec struct Sc=33.63
* | * | * | * | * | * | * | *
Seq: GGGGCAGTAGGGTAGCCtGGTccATCCTAGAGCGTTTGGGACGCTTTGACGGCAGTTCGAATCTGCCCTGCCCCATCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig239.trna11 (1080017-1080088) Length: 72 bp
Type: Ala Anticodon: GGC at 33-35 (1080049-1080051) Score: 70.95
HMM Sc=47.20 Sec struct Sc=23.75
* | * | * | * | * | * | * |
Seq: GGGCCGATAGATCAGGGGTAGATCGCTACCTTGGCATGGTAGAGGcCGCGGGTTCAATTCCCGCTCGGTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna12 (1125032-1125104) Length: 73 bp
Type: Thr Anticodon: GGT at 34-36 (1125065-1125067) Score: 79.93
HMM Sc=51.61 Sec struct Sc=28.32
* | * | * | * | * | * | * |
Seq: GCCTCAGTGGCTCAGCCGGTAGAGCGTGTCCTTGGTAAGGACAAGGtCGCGAGTTCGAATCTCGCCTGAGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna13 (1232468-1232552) Length: 85 bp
Type: Leu Anticodon: CAG at 37-39 (1232504-1232506) Score: 53.82
HMM Sc=22.37 Sec struct Sc=31.45
* | * | * | * | * | * | * | * |
Seq: GCGAGAGTTGCCAAGCCaGGTcaAAGGCGCCAGGTTCAGGGCCTGGTCTCGTAGGAGTtCGCCGGTTCGAATCCGGCCTCTCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig239.trna14 (1460063-1460134) Length: 72 bp
Type: Arg Anticodon: GCG at 34-36 (1460096-1460098) Score: 49.13
HMM Sc=18.38 Sec struct Sc=30.75
* | * | * | * | * | * | * |
Seq: GTCCCGGTAGGGTAGTGGAtATCCTAGAAGCCTGCGGAGCTTTTGACCCGGGTTCAAGTCCCGGCCGGGGCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna15 (1528671-1528755) Length: 85 bp
Type: Leu Anticodon: GAG at 37-39 (1528707-1528709) Score: 50.61
HMM Sc=16.00 Sec struct Sc=34.61
* | * | * | * | * | * | * | * |
Seq: GCGAGGGTTGCCAAGCCaGGTcaAAGGCGCCAGGTTGAGGGCCTGGTCTCGTAGGAGTtCGTGAGTTCGAATCTCACCCCTCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig239.trna16 (1698223-1698297) Length: 75 bp
Type: Glu Anticodon: CTC at 37-39 (1698259-1698261) Score: 49.99
HMM Sc=17.88 Sec struct Sc=32.11
* | * | * | * | * | * | * |
Seq: GCTGCTATAGTGTAGACcGGCcaATCATGCAGGACTCTCACTCCTGCGACTGGGGTTCGAATCCCCATAGCAGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna17 (1737261-1737333) Length: 73 bp
Type: Glu Anticodon: TTC at 35-37 (1737295-1737297) Score: 56.96
HMM Sc=30.04 Sec struct Sc=26.92
* | * | * | * | * | * | * |
Seq: GCTGCTATAGTGTAGGGGCcaATCATGTCGGCCTTTCACGCCGACGACAGGGGTTCGAATCCCCTTAGCAGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna18 (1792799-1792883) Length: 85 bp
Type: Ser Anticodon: GCT at 35-37 (1792833-1792835) Score: 60.54
HMM Sc=30.62 Sec struct Sc=29.92
* | * | * | * | * | * | * | * |
Seq: GTTGAGGTAGCCAAGCCtGGTATGGCGCAGGTTTGCTAAACCTGTGTCCCCCTGGGACtCGAGGGTTCAAATCCCTCCCTCAGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>...<<<<...>>>>>.......<<<<<<<<<<<<.
Contig239.trna19 (1796583-1796656) Length: 74 bp
Type: Pro Anticodon: CGG at 36-38 (1796618-1796620) Score: 34.45
Possible pseudogene: HMM Sc=5.94 Sec struct Sc=28.51
* | * | * | * | * | * | * |
Seq: GGGGTCGTGGGGTAGCCtGGCcATCCTATGGCGTTCGGGATGCTGTGACCTGAGTTCAAATCTCAGCGACCCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna20 (1847904-1847980) Length: 77 bp
Type: Val Anticodon: GAC at 35-37 (1847938-1847940) Score: 68.67
HMM Sc=37.76 Sec struct Sc=30.91
* | * | * | * | * | * | * | *
Seq: GGGCTCGTGGTCTAGCTGGTtATGACGTCGCCTTGACATGGCGGAGGtCCTGAGTTCGAATCTCAGCGAGCCCATCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig239.trna21 (2001006-2001080) Length: 75 bp
Type: Arg Anticodon: TCT at 36-38 (2001041-2001043) Score: 66.20
HMM Sc=48.38 Sec struct Sc=17.82
* | * | * | * | * | * | * |
Seq: GGGTCTGTGGCTTAGCCaGGAcATAGCGCCGGGCTTCTAACCCGGACGtCGGGGGTTCGAATCCCCCCAGGCCCG
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna22 (2005461-2005534) Length: 74 bp
Type: Phe Anticodon: GAA at 35-37 (2005495-2005497) Score: 75.34
HMM Sc=54.73 Sec struct Sc=20.61
* | * | * | * | * | * | * |
Seq: GCCCCTGTAGCTCAGACtGGGAGAGCGCCAGACTGAAGATCTGGTTGtCCCCGGTTCAAATCCGGGCGGGGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna23 (2005657-2005729) Length: 73 bp
Type: Thr Anticodon: GGT at 34-36 (2005690-2005692) Score: 58.36
HMM Sc=41.94 Sec struct Sc=16.42
* | * | * | * | * | * | * |
Seq: ACCTTCGTGGATCAGCCGGTAGAGCATGTCCTTGGTAAGGACAAGGtCGCAGGTTCAATTCCCGCCGAAGGCT
Str: .>>>>>>..>.>>........<<.<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<..
Contig239.trna24 (2080626-2080698) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (2080659-2080661) Score: 82.14
HMM Sc=55.63 Sec struct Sc=26.51
* | * | * | * | * | * | * |
Seq: GCCGCCATAACTCAGTTGGTAGAGTGGCTGGCTGTTAACCAGCATGtCACAGGTTCGAGTCCTGTTGGCGGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna25 (2242351-2242421) Length: 71 bp
Type: Gly Anticodon: TCC at 33-35 (2242383-2242385) Score: 63.59
HMM Sc=31.23 Sec struct Sc=32.36
* | * | * | * | * | * | * |
Seq: GCATCGATGGTCTAGTGGTATGACTTTGGCCTTCCAAGCCAATAGCCCGGGTTCAATTCCCGGTCGATGCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna26 (2242424-2242497) Length: 74 bp
Type: Val Anticodon: CAC at 35-37 (2242458-2242460) Score: 67.43
HMM Sc=35.81 Sec struct Sc=31.62
* | * | * | * | * | * | * |
Seq: GGGCTCGTGGTCTAGCTGGTtATGACGTCGCCTTCACACGGCGGAGGtCTCGAGTTCGAATCTCGACGAGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna27 (2415125-2415199) Length: 75 bp
Type: Met Anticodon: CAT at 36-38 (2415160-2415162) Score: 80.73
HMM Sc=66.43 Sec struct Sc=14.30
* | * | * | * | * | * | * |
Seq: GGGCCCGTAGCTTAGTCcGGTcAGAGCGCCCGGCTCATAACCGGGCGGtCGTGGGTTCGAATCCCTCCGGGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
Contig239.trna28 (2113035-2112953) Length: 83 bp
Type: Leu Anticodon: CAA at 35-37 (2113001-2112999) Score: 54.56
HMM Sc=17.76 Sec struct Sc=36.80
* | * | * | * | * | * | * | * |
Seq: GCGAGTGTTACCGAGCGGCcaAAGGTGATCGACTCAAGATCGATTCTCGAAGGAGTtCGCAGGTTCGAATCCTGCCACTCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig239.trna29 (1822584-1822512) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (1822551-1822549) Score: 78.18
HMM Sc=57.41 Sec struct Sc=20.77
* | * | * | * | * | * | * |
Seq: GGGCTCATAGCTCAGTTGGAAGAGCGCCGCCTTTGCGAGGCGGAGGcCGGGGGTTCAAATCCCCCTGAGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna30 (1819352-1819281) Length: 72 bp
Type: Cys Anticodon: GCA at 33-35 (1819320-1819318) Score: 50.27
HMM Sc=19.54 Sec struct Sc=30.73
* | * | * | * | * | * | * |
Seq: GCCAAGGTGGCGGAGCGGCCACGCGGTTGACTGCAGATCAACTACaCCCCGGTTCAAGTCCGGGCCTTGGCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna31 (1695747-1695673) Length: 75 bp
Type: Arg Anticodon: CCT at 36-38 (1695712-1695710) Score: 62.62
HMM Sc=36.79 Sec struct Sc=25.83
* | * | * | * | * | * | * |
Seq: GGGCTTGTGGCCTAGCCcGGAcATGGCGTCAGCCTCCTAAGCTGAATGcCGGGGGTTCAAATCCCCCCAAGCCCG
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna32 (1674306-1674200) Length: 107 bp
Type: Tyr Anticodon: GTA at 35-37 (1674272-1674270) Score: 26.90
Possible pseudogene: HMM Sc=-7.17 Sec struct Sc=34.07
* | * | * | * | * | * | * | * | * | * | *
Seq: CCCGCCTTAACTCAGACtGGTAGAGTGCGCGGCTGTAGTatagtCTTCGCTCTCGGGCGAACtgcgcggctaCCGCGATGtCCCCGGTTCGAATCCGGGAGGCGGGA
Str: >>>>>>>..>>>>.........<<<<.>>.>>............<<.<<...>>>.>................<.<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna33 (1674181-1674106) Length: 76 bp
Type: Asp Anticodon: GTC at 35-37 (1674147-1674145) Score: 56.37
HMM Sc=24.70 Sec struct Sc=31.67
* | * | * | * | * | * | * | *
Seq: GCCCAGGTAGTGTAGTGGCctATCATGACGGCCTGTCACGCCGTCGACACGGATTCGAATTCCGTCCTGGGCGTCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig239.trna34 (1650317-1650208) Length: 110 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 25.18
Possible pseudogene: HMM Sc=-1.18 Sec struct Sc=26.36
* | * | * | * | * | * | * | * | * | * | *
Seq: GCTGCGGTGGCCTAGTCGGTtAGGGCGCCAGACTCATAgggtttttgagaagacggtgcgtccaagcctgggacaTCTGGAAAtCGTGGGTTCGGATCCCACCCGCAGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>...........................................<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna35 (1647663-1647579) Length: 85 bp
Type: Leu Anticodon: GAG at 37-39 (1647627-1647625) Score: 50.61
HMM Sc=16.00 Sec struct Sc=34.61
* | * | * | * | * | * | * | * |
Seq: GCGAGGGTTGCCAAGCCaGGTcaAAGGCGCCAGGTTGAGGGCCTGGTCTCGTAGGAGTtCGTGAGTTCGAATCTCACCCCTCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig239.trna36 (1643939-1643867) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (1643906-1643904) Score: 78.72
HMM Sc=52.54 Sec struct Sc=26.18
* | * | * | * | * | * | * |
Seq: GCCCCAGTGGCTTAGCTGGCAGAGCGGCTGACTTGTAATCAGCAGGtCCCGAGTTCAAATCTCGGCTGGGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna37 (1436443-1436359) Length: 85 bp
Type: Ser Anticodon: TGA at 35-37 (1436409-1436407) Score: 58.29
HMM Sc=30.85 Sec struct Sc=27.44
* | * | * | * | * | * | * | * |
Seq: GCCGGGATAGTCTAGTCcGGGAAGGCGGTGGCCTTGAAAGCCACTGGTGCCTGGCACCtCGGGAGTTCAAATCTCCCTCCCGGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>.><<<<<...>>>>>.......<<<<<<<<<<<<.
Contig239.trna38 (1153938-1153854) Length: 85 bp
Type: Leu Anticodon: TAG at 37-39 (1153902-1153900) Score: 55.02
HMM Sc=26.16 Sec struct Sc=28.86
* | * | * | * | * | * | * | * |
Seq: GCGGGGGTTGCCGAGCCaGGTcaAAGGCGCTGGATTTAGGGTCCAGTCTCGAAGGAGTtCAAGGGTTCGAATCCCTTCCCCCGCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig239.trna39 (1120975-1120904) Length: 72 bp
Type: Arg Anticodon: CCG at 34-36 (1120942-1120940) Score: 47.40
HMM Sc=17.62 Sec struct Sc=29.78
* | * | * | * | * | * | * |
Seq: GTCTCGGTAGGGTAGTGGAtATCCTGAAAGCCTCCGGAGCTTTCGACCCGGGTTCGAATCCCGGCCGGGGCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna40 (959094-959020) Length: 75 bp
Type: Gly Anticodon: GCC at 34-36 (959061-959059) Score: 63.83
HMM Sc=30.37 Sec struct Sc=33.46
* | * | * | * | * | * | * |
Seq: GCGCCGATAGTGTAGTGGTtATCACTAGGCGTTGCCAACGCCTAAACCCGGGTTCGAGTCCCGGTCGGCGCATCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig239.trna41 (638194-638121) Length: 74 bp
Type: Val Anticodon: TAC at 35-37 (638160-638158) Score: 68.55
HMM Sc=40.19 Sec struct Sc=28.36
* | * | * | * | * | * | * |
Seq: GGGCTTGTGGTCTAGCCGGTcATGACGTCGCCCTTACACGGCGAAGAtCCCCGGTTCGAATCCGGGCAGGCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna42 (538909-538838) Length: 72 bp
Type: Arg Anticodon: TCG at 34-36 (538876-538874) Score: 51.13
HMM Sc=20.13 Sec struct Sc=31.00
* | * | * | * | * | * | * |
Seq: GGACCCATGGGGTAGTGGAcATCCTTTTGGGCTTCGAACCCAAGGACGCGGGTTCAATTCCCGCTGGGTCCG
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna43 (528505-528433) Length: 73 bp
Type: Gln Anticodon: CTG at 35-37 (528471-528469) Score: 48.42
HMM Sc=18.16 Sec struct Sc=30.26
* | * | * | * | * | * | * |
Seq: AGCCCGGTAGTGTAGCGGTcaATCATGTGAGACTCTGGATCTCGCGACAGCAGTTCGAATCTGCTCCGGGCTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna44 (520620-520534) Length: 87 bp
Type: Ser Anticodon: GGA at 35-37 (520586-520584) Score: 60.46
HMM Sc=27.38 Sec struct Sc=33.08
* | * | * | * | * | * | * | * | *
Seq: GCTGAGGTAGTCTAGACcGGTAGGGCGCGGGCCTGGAAAGCCCGTGGGGCGTTGaGCCCCtCGGGAGTTCAAATCTCCCCCTCAGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>.....<<<<...>>>>>.......<<<<<<<<<<<<.
Contig239.trna45 (448293-448221) Length: 73 bp
Type: His Anticodon: GTG at 35-37 (448259-448257) Score: 46.78
HMM Sc=14.94 Sec struct Sc=31.84
* | * | * | * | * | * | * |
Seq: GCCAGGGTGGGGTAGTCGGTtATCCTAAGGGACTGTGGATCCCTCGACCCGGGTTCGAATCTCGGCCCTGGCC
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig239.trna46 (378766-378694) Length: 73 bp
Type: Lys Anticodon: CTT at 34-36 (378733-378731) Score: 81.87
HMM Sc=62.76 Sec struct Sc=19.11
* | * | * | * | * | * | * |
Seq: GGGCCTGTAGCTTAGTTGGCAGAGCGACGGACTCTTAATCCGTAGGcCAAGGGTTCAAATCCCTTCAGGCCCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig239.trna47 (270542-270466) Length: 77 bp
Type: Pro Anticodon: GGG at 36-38 (270507-270505) Score: 37.59
Possible pseudogene: HMM Sc=-2.40 Sec struct Sc=39.99
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGGGTAGCCtGGCcATCCTAGGAGACTGGGGGTCTTCTGACCTGCGTTCAAATCGCAGTGGCCCCATCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig239.trna48 (248553-248469) Length: 85 bp
Type: Ser Anticodon: CGA at 35-37 (248519-248517) Score: 55.38
HMM Sc=29.58 Sec struct Sc=25.80
* | * | * | * | * | * | * | * |
Seq: GCCGAGGTAGTCTAGTCcGGGAAGGCGGTGGCCTCGAAAGCCACTGGTGTTCGgCACCtCGGGAGTTCAAATCTCCCCCTCGGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<<<<.
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