- Genome Home
- Assembly
- Overlap View
Alignment last updated: 11/20/2008 17:02:23
AL670771.6 Mouse DNA sequence from clone RP23-256C8 on chromosome X Contains a novel gene (4932429P05Rik) and a pseudogene similar to part of splicing factor arginine/serine-rich 2 interacting protein (Sfrs2ip), complete sequence [htgs_phase3]
Length: 219,340 bp
AL672285.8 Mouse DNA sequence from clone RP23-45G5 on chromosome X Contains a novel gene (4930415L06Rik) and a novel pseudogene, complete sequence [htgs_phase3]
Length: 164,443 bp
Join evaluation: Alignment count: 1
|
Mismatches = 0, Gaps = 0, Length = 2000 Percent identity = 100% Score = 3965 bits (2000), Expect = 0 1 BAC and 2 Fosmid bridging clones. 1 BAC and 2 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AL670771.6 >217341 ttgtacctgataaaaaagaaagtgaggccttgaactgattgacacaggaaataactttct 217400 AL672285.8 >1 ............................................................ 60 AL670771.6 >217401 gagcaaaacggcattagcacagggactaagatcaataattttaaaatatgacctcatgaa 217460 AL672285.8 >61 ............................................................ 120 AL670771.6 >217461 gctgaaagtttctgtatgacaaagaacatcatcatttgggcaaagcaatgaattacagaa 217520 AL672285.8 >121 ............................................................ 180 AL670771.6 >217521 taggaaagattatttaaacagacaaaaagtattccattgcataaatataacatattttct 217580 AL672285.8 >181 ............................................................ 240 AL670771.6 >217581 ttatccatgaacacatttacagacatctggattagttccaattactggctattatggata 217640 AL672285.8 >241 ............................................................ 300 AL670771.6 >217641 gagcagcagtgaatatgtttgagcatatgattttgtggtaggataaagtattctctgagt 217700 AL672285.8 >301 ............................................................ 360 AL670771.6 >217701 atatgatcaagagtactatggttcaatattgaggtaagtccattcacatctttctaaaga 217760 AL672285.8 >361 ............................................................ 420 AL670771.6 >217761 atttccatattgatttccatagtagctataaatgacttcactcccaccagcagtggatga 217820 AL672285.8 >421 ............................................................ 480 AL670771.6 >217821 aagtctctcttcttccacatccttggcaatatgagctgtactttgtgttattgaagttgg 217880 AL672285.8 >481 ............................................................ 540 AL670771.6 >217881 atatttctgactagtataagatggaatagtaaagtactttttaaaatttccctgatgact 217940 AL672285.8 >541 ............................................................ 600 AL670771.6 >217941 aagatgttgaacatttctttgtttcctactcatttttattcctctattgagaatttgtgt 218000 AL672285.8 >601 ............................................................ 660 AL670771.6 >218001 gtatccatacctcatttttgttgcttttttccttgatgtccagttttattttttaagttc 218060 AL672285.8 >661 ............................................................ 720 AL670771.6 >218061 ctcatatattttagaaaattgccatctatcagaagtatagttgtggaggggaatggggga 218120 AL672285.8 >721 ............................................................ 780 AL670771.6 >218121 gtttaggattgggtgtggagaaggacaaaaaagagagctagatagtcatgaaaatgaata 218180 AL672285.8 >781 ............................................................ 840 AL670771.6 >218181 taaatctaaaaatgacagaagtgaggaagtaggtggcatctccaagatgagatagagacc 218240 AL672285.8 >841 ............................................................ 900 AL670771.6 >218241 tgagataagggtgacacccaaaaaacacttggggtgatcttatttgtgactcattgcatt 218300 AL672285.8 >901 ............................................................ 960 AL670771.6 >218301 ggcaatatgtctcctgaagaggccacttcctatgaccaggcaggaatcacagtggactaa 218360 AL672285.8 >961 ............................................................ 1020 AL670771.6 >218361 tagggacaccaatccacccacaaaactttcaaccctaaatttatcctgtcaataagagat 218420 AL672285.8 >1021 ............................................................ 1080 AL670771.6 >218421 acaggcacatgtaatagagcaaagccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa 218480 AL672285.8 >1081 ............................................................ 1140 AL670771.6 >218481 aaaaaaaaaaaaaggaatggcaaacaaataaccagcccaactagagacctagttaatggg 218540 AL672285.8 >1141 ............................................................ 1200 AL670771.6 >218541 aaagcaccaatcccaaacactattaatggtactctgttatacttgcatacaggagcctag 218600 AL672285.8 >1201 ............................................................ 1260 AL670771.6 >218601 catggatattctctgagagggtctatctagcagctgacttagatacagatacgcaaagct 218660 AL672285.8 >1261 ............................................................ 1320 AL670771.6 >218661 aagcagcagatggagcttgaggactcttatggaagcataggaggaagaattacaggactg 218720 AL672285.8 >1321 ............................................................ 1380 AL670771.6 >218721 aaaggaactccacaggaagatcagcagagccatctaacctggataattttgactctcaga 218780 AL672285.8 >1381 ............................................................ 1440 AL670771.6 >218781 atatgaatcaatagccaaagaacacacacaggattgacctaggctttcccacacatatgg 218840 AL672285.8 >1441 ............................................................ 1500 AL670771.6 >218841 agaagatgggctgcttagtcttcatgtgggtcccaaacaactggcatggggactatccca 218900 AL672285.8 >1501 ............................................................ 1560 AL670771.6 >218901 aaagctgttgcctgtaggcaagatgttcacctagctgggctgccttgtctgaactcgatg 218960 AL672285.8 >1561 ............................................................ 1620 AL670771.6 >218961 tgaaatgaagtgcttagtctcatagagattgaagtgccaggttgtgggaatactctgggg 219020 AL672285.8 >1621 ............................................................ 1680 AL670771.6 >219021 gaaagtacatattcagaggagaaggacaggaggatgggagaaggactatgggagggggtg 219080 AL672285.8 >1681 ............................................................ 1740 AL670771.6 >219081 actgggaggggaaagtaagcagcacataaattgaataagtaaaattttaaattaaattaa 219140 AL672285.8 >1741 ............................................................ 1800 AL670771.6 >219141 attaagaagaaaacaaaaagaaatgtttaattttctccacagatgctacccaccaatgtc 219200 AL672285.8 >1801 ............................................................ 1860 AL670771.6 >219201 aaaaaatatctgataaacaacttaaataaacctttaatccctaagaaagcactctttaaa 219260 AL672285.8 >1861 ............................................................ 1920 AL670771.6 >219261 tgtatatcaacaaaaccaagtcaaacaaaaacaaacaaacaaacaaacaaaacaacagtt 219320 AL672285.8 >1921 ............................................................ 1980 AL670771.6 >219321 ccagatttagtgcagaattc 219340 AL672285.8 >1981 .................... 2000
Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time |
A | 219340 | 2001 | + | + | chenhc | Taxid 10090 chrom X Reference assembly | 2008-11-20 17:02:23.740 |
Id | Type | Date | Whodid | Comment |
1109 | ImportOldDb | 09/02/2005 08:42:00 | f_old_db | |
1110 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
179705 | CreateSwitchPt | 11/20/2008 17:02:23 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
C3H-157A15 | AL670771.6 | 99.03% | pos 109365 (R-) | |||
AL670771.6 | 99.74% | pos 109380 (R-) | ||||
C3H-175A11 | AL670771.6 | 99.7% | pos 75630 (R+) | AL670771.6 | 99.44% | pos 198247 (F-) |
C3H-70E15 | AL670771.6 | 99.76% | pos 48058 (F-) | |||
C3H-98G21 | AL672285.8 | 99.23% | pos 157759 (F+) | |||
CH29-147F15 | AL672285.8 | 99.75% | pos 145101 (F+) | |||
CH29-23O9 | AL670771.6 | 99.78% | pos 153201 (F+) | |||
CH29-25K9 | AL672285.8 | 99.74% | pos 73029 (F+) | |||
CH29-547F4 | AL670771.6 | 99.63% | pos 219311 (R-) | AL670771.6 | 99.71% | pos 42177 (F+) |
AL672285.8 | 99.63% | pos 1971 (R-) | ||||
CH29-561E9 | AL670771.6 | 100% | pos 94785 (R-) | |||
CH29-595B4 | AL672285.8 | 99.75% | pos 159753 (F-) | |||
CH29-94H6 | AL670771.6 | 99.21% | pos 108116 (F-) | |||
RP23-127G11 | AL670771.6 | 99.62% | pos 64802 (F-) | |||
RP23-300N20 | AL672285.8 | 99% | pos 54349 (R+) | |||
RP24-184K19 | AL670771.6 | 99.2% | pos 93476 (R+) | |||
RP24-389L1 | AL670771.6 | 99.69% | pos 88547 (R-) | |||
RP24-62J1 | AL672285.8 | 99.41% | pos 120290 (R+) |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
WI1-1523L13 | AL670771.6 | 99.66% | pos 175900 (R+) | AL670771.6 | 100% | pos 213922 (F-) |
WI1-1637P10 | AL672285.8 | 100% | pos 18606 (R-) | AL670771.6 | 100% | pos 195273 (F+) |
WI1-1639O8 | AL670771.6 | 99.78% | pos 98537 (R-) | AL670771.6 | 99.63% | pos 59229 (F+) |
WI1-1810M6 | AL672285.8 | 99.51% | pos 70188 (F+) | |||
WI1-1867N17 | AL672285.8 | 99.82% | pos 105309 (R-) | AL672285.8 | 99.71% | pos 66000 (F+) |
WI1-1969I24 | AL672285.8 | 99.76% | pos 64266 (R-) | |||
WI1-2063M17 | AL670771.6 | 100% | pos 82251 (R+) | AL670771.6 | 100% | pos 121775 (F-) |
WI1-2348H19 | AL670771.6 | 99.8% | pos 6845 (R-) | |||
WI1-2419L15 | AL670771.6 | 100% | pos 9190 (F-) | |||
WI1-2506B5 | AL670771.6 | 100% | pos 160995 (R-) | AL670771.6 | 99.83% | pos 128520 (F+) |
WI1-2649I13 | AL670771.6 | 99.77% | pos 56651 (R-) | AL670771.6 | 99.5% | pos 17944 (F+) |
WI1-2685L1 | AL672285.8 | 100% | pos 93027 (R-) | AL672285.8 | 100% | pos 53482 (F+) |
WI1-2794K10 | AL670771.6 | 99.82% | pos 138283 (R-) | AL670771.6 | 99.81% | pos 101966 (F+) |
WI1-2804G10 | AL670771.6 | 100% | pos 213629 (R-) | AL670771.6 | 100% | pos 175073 (F+) |
WI1-290G14 | AL670771.6 | 99.64% | pos 49246 (R-) | AL670771.6 | 100% | pos 9187 (F+) |
WI1-422G8 | AL672285.8 | 99.69% | pos 45996 (R-) | |||
WI1-448P10 | AL672285.8 | 100% | pos 45970 (R-) | |||
WI1-486G8 | AL670771.6 | 99.77% | pos 212755 (R+) | AL672285.8 | 100% | pos 37293 (F-) |
WI1-590M8 | AL670771.6 | 99.85% | pos 159437 (R+) | AL670771.6 | 99.86% | pos 198811 (F-) |
WI1-610O22 | AL672285.8 | 100% | pos 17087 (R-) | |||
WI1-61K22 | AL672285.8 | 99.84% | pos 69128 (R+) | AL672285.8 | 100% | pos 107682 (F-) |
WI1-630F2 | AL670771.6 | 100% | pos 117081 (R+) | AL670771.6 | 100% | pos 162352 (F-) |
WI1-855E23 | AL670771.6 | 99.83% | pos 101112 (R+) | AL670771.6 | 100% | pos 138944 (F-) |
AL670771.6 | 100% | pos 101115 (R+) | AL670771.6 | 100% | pos 138987 (F-) | |
WI1-90K8 | AL670771.6 | 100% | pos 134787 (R-) | AL670771.6 | 99.82% | pos 93640 (F+) |
WI1-971M21 | AL670771.6 | 99.66% | pos 33879 (F+) | |||
WI1-975C11 | AL672285.8 | 99.05% | pos 74416 (R-) | AL672285.8 | 99.48% | pos 35159 (F+) |