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Report for CCDS ID CCDS36642.1

CCDS Status Species Chrom. Gene NCBI Builds Links
36642.1 Public Mus musculus 13 9530008L14Rik 37.1 - 37.1 CCDS HistoryEntrezGene:109254Re-query CCDS DB by GeneID:109254

Sequence IDs included in CCDS 36642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000072012 ENSMUSP00000071899 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072012Link to Ensembl Protein Viewer:ENSMUSP00000071899Re-query CCDS DB by Nucleotide ID:ENSMUST00000072012Re-query CCDS DB by Protein ID:ENSMUSP00000071899
Current member NCBI NM_175417.4 NP_780626.1 Accepted alive Link to Nucleotide Sequence:NM_175417.4Link to Protein Sequence:NP_780626.1Re-query CCDS DB by Nucleotide ID:NM_175417Re-query CCDS DB by Protein ID:NP_780626

Chromosomal Locations for CCDS 36642.1

On '-' strand of Chromosome 13 (NC_000079.5)
Genome Browser links: Link to NCBI Map Viewer on chromosome 13Link to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

Chromosome Start Stop Links
13 41860127 41860161 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41862705 41862856 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41872877 41872992 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41909584 41909685 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41911507 41911641 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41923512 41923754 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41942811 41942816 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGCAGCTTTCCAGCCTGAACAGAGGGCAGCTGGGACACCCAGGACTCAGAGTGAACGCAGAGCGGGTGC
CACTGTCGCTCCGATCCAGGGAAGCCATGACGAAAACAACCACTTGCGTGTACCACTTCCTTGTTCTGAA
CTGGTACATTTTCCTCAATTATCACATCCCACAGATTGGAAGGAATGAGGAGAAGCTAAGGGAATTCCAT
GACGGTGGGCGATCCAAGTACTTGACACTCCTTAATCTGCTCTTGCAGGCCATTTTCTTTGGGGTCGCCT
GCCTGGATGATGTGCTGAAAAGAGTCATCGGAAGGAAAGACATCAAGTTTGTCACATCCTTCAGAGATCT
GCTCTTTACCACAATGGCTTTTCCTATATCCACATTTGTGTTCTTGGTATTCTGGACTCTCTTTCACTAC
GACCGGAGCCTCGTTTACCCCAAGGGCTTGGATGACTTCTTCCCAGCATGGGTTAACCACGCAATGCATA
CCTCCATATTTCCCTTTTCACTGTTTGAAACCATCCTCAGACCACACAACTATCCATCGAAGAAGCTAGG
ACTCACCTTGCTGGGTGCTTTTAATTTTGCCTACATCATCAGGATCCTGTGGCGCTACGTTCAGACTGGA
AACTGGGTGTACCCCGTGTTTGACTCCCTCAGCCCACTGGGTATTATCATCTTCTTCTCAGCCGCTTACA
TCCTAGTCGCCGGCATCTACCTGTTTGGCGAGAAGATCAATCACTGGAAATGGGGTGCCATAGCAAAGCC
ACAGATGAAGAAGAATTGA

Translation (262 aa):
MQLSSLNRGQLGHPGLRVNAERVPLSLRSREAMTKTTTCVYHFLVLNWYIFLNYHIPQIGRNEEKLREFH
DGGRSKYLTLLNLLLQAIFFGVACLDDVLKRVIGRKDIKFVTSFRDLLFTTMAFPISTFVFLVFWTLFHY
DRSLVYPKGLDDFFPAWVNHAMHTSIFPFSLFETILRPHNYPSKKLGLTLLGAFNFAYIIRILWRYVQTG
NWVYPVFDSLSPLGIIIFFSAAYILVAGIYLFGEKINHWKWGAIAKPQMKKN


Links Key
 Links to:   History report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Map Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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