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COG0500 |
SAM-dependent methyltransferases |
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43 hits to 13 species
200 letters
933 = VNG1280C (200) =
119 = PAB0269 (205) =
95 = BS_yrrT (213) =
94 = TVN0896 (245) =
93 = BS_ycgJ (228) =
91 = VNG7121 (391) =
85 = CC2141_2 (219) =
81 = PA3119 (187) =
80 = DR0026 (269) =
77 = mll1589_2 (234) =
77 = Rv1377c (212) =
76 = VNG0821C (217) =
75 = BH2887 (261) =
73 = Rv0560c (241) =
70 = Z0233 (256) =
70 = DR0431 (239) =
69 = VNG0845C (269) =
68 = yafE (207) =
67 = VNG0294G (174) =
67 = aq_2139 (217) =
66 = DRA0130 (198) =
65 _ SPy1606 (451) COG2265
65 = mll3908 (242) =
65 _ PH1731 (198) COG2890
65 _ PH1137 (407) COG2265
64 = PM1310 (270) =
64 = mlr5368 (259) =
64 = VNG0503C (262) =
64 = Rv3038c (327) =
64 = Rv0089 (197) =
64 = BS_yxbB (244) =
64 = TM0938 (254) =
64 = PH0226 (227) =
63 _ PM1686 (268) COG2226
63 = PM0985 (241) =
63 _ L0041 (512) COG3051
63 _ TP0114 (331) COG0330
63 _ Rv3290c (449) COG0160
63 = DRA0327 (236) =
61 = L28696 (244) =
61 _ VNG0425G (238) COG2519
61 _ BS_yefA (459) COG2265
61 = TM0318 (207) =
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= VNG1280C
(200 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
VNG1280C 363 e-101
PAB0269 50 1e-06
BS_yrrT 41 9e-04
TVN0896 41 0.001
BS_ycgJ 40 0.002
VNG7121 40 0.003
CC2141_2 37 0.013
PA3119 36 0.037
DR0026 35 0.048
mll1589_2 34 0.11
Rv1377c 34 0.11
VNG0821C 34 0.14
BH2887 33 0.18
Rv0560c 33 0.31
Z0233 32 0.70
DR0431 32 0.70
VNG0845C 31 0.91
yafE 31 1.2
VNG0294G 30 1.6
aq_2139 30 1.6
DRA0130 30 2.0
SPy1606 30 2.6
mll3908 30 2.6
PH1731 30 2.6
PH1137 30 2.6
PM1310 29 3.5
mlr5368 29 3.5
VNG0503C 29 3.5
Rv3038c 29 3.5
Rv0089 29 3.5
BS_yxbB 29 3.5
TM0938 29 3.5
PH0226 29 3.5
PM1686 29 4.5
PM0985 29 4.5
L0041 29 4.5
TP0114 29 4.5
Rv3290c 29 4.5
DRA0327 29 4.5
L28696 28 7.7
VNG0425G 28 7.7
BS_yefA 28 7.7
TM0318 28 7.7
# >VNG1280C
# Length = 200
#
# Score = 363 bits (933), Expect = e-101
# Identities = 183/200 (91%), Positives = 183/200 (91%)
#
# Query: 1 MKKTLEEHAARFDDVAAAYDDDQTPEYNECVALVLEHADVGGADTVLDXXXXXXXXXXXX 60
# MKKTLEEHAARFDDVAAAYDDDQTPEYNECVALVLEHADVGGADTVLD
# Sbjct: 1 MKKTLEEHAARFDDVAAAYDDDQTPEYNECVALVLEHADVGGADTVLDLGCGTGAIALGL 60
#
# Query: 61 XXXXXRVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHL 120
# RVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHL
# Sbjct: 61 AADAGRVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHL 120
#
# Query: 121 SDAEKRSAIDTIAGLNPHRIVLGDVMLFGGPNPDAPFYSPAVDDPATVGVLADAFTDAGY 180
# SDAEKRSAIDTIAGLNPHRIVLGDVMLFGGPNPDAPFYSPAVDDPATVGVLADAFTDAGY
# Sbjct: 121 SDAEKRSAIDTIAGLNPHRIVLGDVMLFGGPNPDAPFYSPAVDDPATVGVLADAFTDAGY 180
#
# Query: 181 AVTAVEMVHEQVGVLVAETR 200
# AVTAVEMVHEQVGVLVAETR
# Sbjct: 181 AVTAVEMVHEQVGVLVAETR 200
#
#
# >PAB0269
# Length = 205
#
# Score = 50.4 bits (119), Expect = 1e-06
# Identities = 50/144 (34%), Positives = 64/144 (43%), Gaps = 21/144 (14%)
#
# Query: 12 FDDVAAAYDDDQTPE------YNECVALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXX 65
# FD YD+D E Y E + LV E VGG TV+D
# Sbjct: 8 FDSWVRTYDEDVEREDWIHADYEEVLKLVAER--VGG--TVVDIGCGTGNILCFLKCE-- 61
#
# Query: 66 RVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFRE-PNYDGDADVVVSNFAMHHLSDAE 124
# R +G + S GM + +EK +D G F P DG AD V+S + HH+ D E
# Sbjct: 62 RYIGVEPSRGMRAKFKEKHGFEPLD------GHFLSIPLLDGTADAVISTYTFHHVPDEE 115
#
# Query: 125 KRSAI-DTIAGLNP-HRIVLGDVM 146
# K AI + + LNP RIV+ DVM
# Sbjct: 116 KEDAIKEMLRVLNPGGRIVIADVM 139
#
#
# >BS_yrrT
# Length = 213
#
# Score = 41.2 bits (95), Expect = 9e-04
# Identities = 54/196 (27%), Positives = 76/196 (38%), Gaps = 33/196 (16%)
#
# Query: 12 FDDVAAAYD------DDQTPEYNECVALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXX 65
# F+D AA YD D Q E +L+ VL+
# Sbjct: 9 FEDWAATYDQTVQGLDIQYKEAFRGYDHILDAIVRKSGTHVLEFGPGTGNLTAKLLDAGK 68
#
# Query: 66 RVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLSDAEK 125
# V G + S M A +K + R + V D F EP + AD +VS++A HHL+D EK
# Sbjct: 69 TVFGIEPSPAMRKLASDKLSGR-TEIVDGDFLTFPEPPFQ--ADTIVSSYAFHHLTDEEK 125
#
# Query: 126 RSAIDTIAG-LNPH-RIVLGDVMLFGGPNPDAPFYSPAVDDP-----------------A 166
# R+AI L+ H +IV D + +A Y A+D
# Sbjct: 126 RAAIKQYGKYLHLHDKIVFADTVF-----ENAQAYQQAIDKARSQGFYQLANDLETEHYP 180
#
# Query: 167 TVGVLADAFTDAGYAV 182
# T+ L + FT G+AV
# Sbjct: 181 TLDALKEMFTAEGFAV 196
#
#
# >TVN0896
# Length = 245
#
# Score = 40.8 bits (94), Expect = 0.001
# Identities = 43/193 (22%), Positives = 71/193 (36%), Gaps = 24/193 (12%)
#
# Query: 13 DDVAAAYDDDQTPEYNECVALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRVVGRDI 72
# +D A + ++ + E + L+ H D T LD V D
# Sbjct: 12 EDYAKSKSHEKGQDLTELLGLINTHRD-----TCLDVATGTGFTAASISQICAHVTALDE 66
#
# Query: 73 SDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLSDAE---KRSAI 129
# + M+ QA+ +R NV F F + + DG D++ A+HH D E K++
# Sbjct: 67 TRAMIEQAQSLIESRATKNVKFVLSTFEDFD-DGKFDLITCRRALHHFKDKEAFFKKAR- 124
#
# Query: 130 DTIAGLNPHRIV-LGDVMLFGGPNPDAPFYSPAVDDPATVGVL----------ADAFTDA 178
# LNP I+ + D++ D + DP +G L + F D
# Sbjct: 125 ---TMLNPGGILAIADMVSPANDRKDNFNVLERIRDPTHIGALKVEEMIKLFEENNFQDI 181
#
# Query: 179 GYAVTAVEMVHEQ 191
# Y + E+ E+
# Sbjct: 182 KYKIITEELTFEE 194
#
#
# >BS_ycgJ
# Length = 228
#
# Score = 40.4 bits (93), Expect = 0.002
# Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
#
# Query: 31 VALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQAREKATTRGVD 90
# + L+++ A+ VLD +G D + M+ A A +GV+
# Sbjct: 1 MGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE 60
#
# Query: 91 NVAFDTGRFRE-PNYDGDADVVVSNFAMHHLSDAEK 125
# NV F G P D D++ +A HH SD K
# Sbjct: 61 NVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRK 96
#
#
# >VNG7121
# Length = 391
#
# Score = 39.7 bits (91), Expect = 0.003
# Identities = 35/113 (30%), Positives = 54/113 (46%), Gaps = 10/113 (8%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFRE-PNYDGDADVVVSNFAMHHLSDAEK 125
# V+G D++ M+++ARE +NV F G P D +VV+SN + +L+ ++
# Sbjct: 231 VIGVDMTPEMISKARENVAKNDAENVEFRLGEIGHLPVADESVNVVISNCVV-NLAPEKQ 289
#
# Query: 126 RSAIDTIAGLNP-HRIVLGDVMLFGGPNPDAPFYSPAVDDP-ATVGVLADAFT 176
# R DT L P R+ + DV+ APF DP + G +A A T
# Sbjct: 290 RVFDDTYRVLRPGGRVAISDVV------QTAPFPDDVQMDPDSLTGCVAGAST 336
#
#
# >CC2141_2
# Length = 219
#
# Score = 37.4 bits (85), Expect = 0.013
# Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
#
# Query: 8 HAARFDDVAAAYDDDQTPEYNECVALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRV 67
# +AAR++++ + Y D+ E A +L G D ++D
# Sbjct: 17 NAARWNEIRSLYVDEAEVE-----AAILRATGEGPFDEMVDLGAGAGRMLTLLGKRAANA 71
#
# Query: 68 VGRDISDGMLTQAREKATTRGVDNVAFDTGR-FREPNYDGDADVVVSNFAMHHLSD 122
# +G D+S ML AR++ + G+ G FR G AD+V + +H+L+D
# Sbjct: 72 LGLDLSQQMLNIARDEVSKAGLTACELRHGDIFRTGLPGGCADLVTVHQVLHYLTD 127
#
#
# >PA3119
# Length = 187
#
# Score = 35.8 bits (81), Expect = 0.037
# Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFRE-PNYDGDADVVVSNFAMHHLSD 122
# +V D+S ML + A RG+ N+ + G+ P DG+ D V S ++ HH D
# Sbjct: 1 MVAYDLSAEMLAVVAQSAAERGMANIRTEQGKAESLPFADGEFDFVFSRYSTHHWRD 57
#
#
# >DR0026
# Length = 269
#
# Score = 35.4 bits (80), Expect = 0.048
# Identities = 55/201 (27%), Positives = 74/201 (36%), Gaps = 34/201 (16%)
#
# Query: 8 HAARFDDVAAAYDDDQTPEYNECVALVLEHA-DVGGADTVLDXXXXXXXXXXXXXXXXXR 66
# +A +FD +AA YD + AL L A DV VLD
# Sbjct: 11 NARQFDRIAADYD---ALGFLTQAALALAAALDVPPTGRVLDVATGTGTVALTLAPKVAE 67
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNY-DGDADVVVSNFAMHHLSDAEK 125
# V+G DI+ M+ QAR++A G NV F + D DVVV + +
# Sbjct: 68 VMGTDIAPAMIEQARQRAA--GRSNVQFVLAEATALTFADQSFDVVVCGAGLFFVP---- 121
#
# Query: 126 RSAIDTIAGLNPHRIVL---GDVML--FG----GPNP----------DAPFYSPAVDDPA 166
# D +A L R VL G+V+ FG GP P +P +
# Sbjct: 122 ----DMVAALREWRRVLRPGGEVVFSAFGRGLLGPLPGLWRERLAGEGVKPGAPPLGRIG 177
#
# Query: 167 TVGVLADAFTDAGYAVTAVEM 187
# TV D AG+A E+
# Sbjct: 178 TVEAAKDLLIQAGFAEVTAEL 198
#
#
# >mll1589_2
# Length = 234
#
# Score = 34.3 bits (77), Expect = 0.11
# Identities = 31/116 (26%), Positives = 47/116 (39%), Gaps = 6/116 (5%)
#
# Query: 8 HAARFDDVAAAYDDDQTPEYNECVALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRV 67
# +AA +D + + + D+ E A +L+ ++LD R
# Sbjct: 17 NAASWDHIRSLHVPDRAVE-----AAMLKLVGKRPFQSMLDLGTGTGRLLEIFSPLYRRG 71
#
# Query: 68 VGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDA-DVVVSNFAMHHLSD 122
# VG D+S MLT AR GV N G P + DA D+V + +H+L D
# Sbjct: 72 VGIDMSREMLTVARANLDKAGVSNAQVRQGDIFSPPVERDAFDLVTIHQVLHYLDD 127
#
#
# >Rv1377c
# Length = 212
#
# Score = 34.3 bits (77), Expect = 0.11
# Identities = 25/63 (39%), Positives = 31/63 (48%), Gaps = 2/63 (3%)
#
# Query: 66 RVVGRDISDGMLTQAREKATTRGVDNVAFDTG-RFREPNYDGDADVVVSNFAMHHLSDAE 124
# +V G DIS LT A+ +A+ GVD V F G + Y G D V+ H L D
# Sbjct: 69 QVTGLDISPTALTTAKRRASDAGVD-VKFAVGDATKLTGYTGAFDTVIDCGMFHCLDDDG 127
#
# Query: 125 KRS 127
# KRS
# Sbjct: 128 KRS 130
#
#
# >VNG0821C
# Length = 217
#
# Score = 33.9 bits (76), Expect = 0.14
# Identities = 20/62 (32%), Positives = 28/62 (44%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLSDAEKR 126
# VV D S G+L++AR++A D P G D+ V +HHL D + R
# Sbjct: 69 VVCVDASTGLLSEARDRAAANDFDATLVAGDAACVPVASGTVDIAVYVATLHHLRDRDAR 128
#
# Query: 127 SA 128
# A
# Sbjct: 129 VA 130
#
#
# >BH2887
# Length = 261
#
# Score = 33.5 bits (75), Expect = 0.18
# Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
#
# Query: 66 RVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLSDAEK 125
# RV+G D+S+ M+ QA+ K ++ F + ++ D + SN +H + DAE+
# Sbjct: 64 RVIGVDVSESMIEQAKGK-----FPHLDFQVAEATDLSFSEKFDAIFSNAVLHWIKDAEE 118
#
#
# >Rv0560c
# Length = 241
#
# Score = 32.7 bits (73), Expect = 0.31
# Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
#
# Query: 68 VGRDISDGMLTQAREKATTRGVDNVAFDTGRFRE-PNYDGDADVVVSNFAMHHLSDAEKR 126
# VG D+S + AR +A RG+ N +F+ YDG D +V + H + +
# Sbjct: 88 VGLDLSPAAVELARHEAAKRGLANASFEVADASSFTGYDGRFDTIVDSTLFHSMPVESRE 147
#
# Query: 127 SAIDTI 132
# + +I
# Sbjct: 148 GYLQSI 153
#
#
# >Z0233
# Length = 256
#
# Score = 31.6 bits (70), Expect = 0.70
# Identities = 30/112 (26%), Positives = 44/112 (38%), Gaps = 3/112 (2%)
#
# Query: 45 TVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFRE-PN 103
# +VLD VV D+S ML + A R + N+ G P
# Sbjct: 47 SVLDMGCGAGHASFVAAQNVSTVVAYDLSAQMLDVVAQAAEVRQLKNITTRQGYAESLPF 106
#
# Query: 104 YDGDADVVVSNFAMHHLSDAEKRSAIDTIAGLNP-HRIVLGDVMLFGGPNPD 154
# D D+V+S ++ HH D + + L P R+++ DVM G P D
# Sbjct: 107 ADNAFDIVISRYSAHHWHDV-GAALREVNRILKPGGRLIVMDVMSPGHPVRD 157
#
#
# >DR0431
# Length = 239
#
# Score = 31.6 bits (70), Expect = 0.70
# Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLSDAEKR 126
# V G D+S + QARE+ T G D + R+P G DVV + HHL +
# Sbjct: 90 VTGLDLSPYAVGQARER--TPGPDIRYLEGDVLRDPIPGGPFDVVYDSGCFHHLPPHRRL 147
#
# Query: 127 SAIDTI 132
# S + T+
# Sbjct: 148 SYLHTL 153
#
#
# >VNG0845C
# Length = 269
#
# Score = 31.2 bits (69), Expect = 0.91
# Identities = 35/154 (22%), Positives = 55/154 (34%), Gaps = 18/154 (11%)
#
# Query: 25 PEYNECVALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQAREKA 84
# P +A ++ V +TVLD V G D++ ML AR+
# Sbjct: 26 PNLLPAIARLVSACGVDPGNTVLDVGCGTGNAALTARRAGATVTGLDVTRSMLELARDTT 85
#
# Query: 85 TTRGVDNVAFDTGRFREPNYDGDA-DVVVSNFAMHHLSDAEKRSAIDTIAGLNPHRIVLG 143
# +++++ G + DA DVV+S+F H S A + + + P G
# Sbjct: 86 QLTDYNDISWVAGDASTLPFPDDAFDVVLSSFG-HVFSPAAAEAGREMLRVAQP-----G 139
#
# Query: 144 DVMLFGGPNPDAPFYSPAVDDPATVGVLADAFTD 177
# + F +PD VG L D D
# Sbjct: 140 GRVAFTAWSPD-----------GLVGALTDVLDD 162
#
#
# >yafE
# Length = 207
#
# Score = 30.8 bits (68), Expect = 1.2
# Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFRE-PNYDGDADVVVSNFAMHHLSDAEK 125
# VV D+S ML + A R + N+ G P D D+V+S ++ HH D
# Sbjct: 20 VVAYDLSAHMLDVVAQAAEARQLKNITTRQGYAESLPFADNAFDIVISRYSAHHWHDV-G 78
#
# Query: 126 RSAIDTIAGLNP-HRIVLGDVMLFGGPNPD 154
# + + L P R+++ DVM G P D
# Sbjct: 79 AALREVNRILKPGGRLIVMDVMSPGHPVRD 108
#
#
# >VNG0294G
# Length = 174
#
# Score = 30.4 bits (67), Expect = 1.6
# Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGV-DNVAF---DTGRFREPNYDGDADVVVSNFAMH--HL 120
# + G DIS ML + R+KA GV D + F D GR P+ D S FAM HL
# Sbjct: 9 ITGLDISGPMLQEGRQKAAQAGVADTIEFMRGDAGRLPFPDNHFD-----SVFAMRFFHL 63
#
# Query: 121 SDA 123
# +D+
# Sbjct: 64 ADS 66
#
#
# >aq_2139
# Length = 217
#
# Score = 30.4 bits (67), Expect = 1.6
# Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 6/52 (11%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMH 118
# VVG DIS+GM REK + N P D D V+SNF++H
# Sbjct: 59 VVGLDISEGMAKAYREKFRKVVIGNAE------NLPFKDRSFDFVLSNFSLH 104
#
#
# >DRA0130
# Length = 198
#
# Score = 30.0 bits (66), Expect = 2.0
# Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLSDAEKR 126
# +V D++D L +AR++ G+ V F+ + G D+V+ + +++LS A
# Sbjct: 67 LVATDVNDKALARARQRCA--GLPQVHFERRGLPDDLPAGPFDLVLLSEVLYYLSPAHLE 124
#
# Query: 127 SAIDTI-AGLNP 137
# A+D + A L+P
# Sbjct: 125 RALDAVLARLSP 136
#
#
# >SPy1606
# Length = 451
#
# Score = 29.6 bits (65), Expect = 2.6
# Identities = 16/65 (24%), Positives = 26/65 (39%)
#
# Query: 34 VLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQAREKATTRGVDNVA 93
# V++ DVG D ++D V G DI + A++ A G DN
# Sbjct: 296 VVKALDVGSKDHIIDAYCGVGSIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAY 355
#
# Query: 94 FDTGR 98
# ++ G+
# Sbjct: 356 YEAGK 360
#
#
# >mll3908
# Length = 242
#
# Score = 29.6 bits (65), Expect = 2.6
# Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLSDAEK 125
# V+G D+S+ ML +AR G+ D + P D+ S+ A+H++ D +
# Sbjct: 68 VLGLDLSEKMLARARAAGPDTGITYERADLDKLHLP--QDSFDLAYSSLALHYVEDVAR 124
#
#
# >PH1731
# Length = 198
#
# Score = 29.6 bits (65), Expect = 2.6
# Identities = 22/76 (28%), Positives = 30/76 (38%), Gaps = 1/76 (1%)
#
# Query: 39 DVGGADTVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQAREKATTRGVDNVAFDTGR 98
# +V D VLD VVG DI++ + A + A G+ NV F
# Sbjct: 33 EVKSDDIVLDVGTGTGILALLAARRARFVVGLDINEKAINLAWKNAKINGIKNVVFILSD 92
#
# Query: 99 FREPNYDGDADVVVSN 114
# E N G D++V N
# Sbjct: 93 LFE-NIRGTFDLIVFN 107
#
#
# >PH1137
# Length = 407
#
# Score = 29.6 bits (65), Expect = 2.6
# Identities = 26/90 (28%), Positives = 39/90 (42%), Gaps = 2/90 (2%)
#
# Query: 23 QTPEYNECVALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQARE 82
# QT Y + V LV + +++ + VLD +VVG D ++ + AR+
# Sbjct: 253 QTNSY-QAVNLVKKVSELVEGERVLDMYSGVGTFGIYLAKRGFKVVGFDSNEFAIEMARK 311
#
# Query: 83 KATTRGVDNVAFDTGRFREPNYDGDADVVV 112
# A VD V FD RE +G V+V
# Sbjct: 312 NAKINKVDAV-FDVATDREVEVNGFDTVIV 340
#
#
# >PM1310
# Length = 270
#
# Score = 29.3 bits (64), Expect = 3.5
# Identities = 16/65 (24%), Positives = 29/65 (44%)
#
# Query: 28 NECVALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQAREKATTR 87
# N V + D+ +++LD +V G D S+GML+ +++AT
# Sbjct: 49 NHYVQAFVSRMDLNNVESLLDVGCGGGAICLAIAPQVKQVYGLDYSEGMLSVLQQRATKL 108
#
# Query: 88 GVDNV 92
# G ++V
# Sbjct: 109 GFEHV 113
#
#
# >mlr5368
# Length = 259
#
# Score = 29.3 bits (64), Expect = 3.5
# Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
#
# Query: 3 KTLEEHAARFDDVAAAYDDDQTPE-YNE---CVALVLEHADVGGADTVLDXXXXXXXXXX 58
# K EE AA +D + YD D + Y C+AL+ H G A +
# Sbjct: 66 KRPEEVAALYDRWSRTYDADMSAAGYRHPTICLALLTRHLPRGAAPLLDAGAGTGLIGEW 125
#
# Query: 59 XXXXXXXRVVGRDISDGMLTQAREK 83
# V DIS GML QA K
# Sbjct: 126 LDISGYPEVEALDISQGMLDQAARK 150
#
#
# >VNG0503C
# Length = 262
#
# Score = 29.3 bits (64), Expect = 3.5
# Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 8/68 (11%)
#
# Query: 74 DGMLTQAREKATTRGVDNVA-------FDTGRFREPNYDGDA-DVVVSNFAMHHLSDAEK 125
# D +T A + T +D +A FD R+ Y D D V ++ + HL DA++
# Sbjct: 76 DVTVTDAFQGVTADAMDALADAPHEFTFDVVDARDIPYPADTFDAVTAHHVLAHLGDADR 135
#
# Query: 126 RSAIDTIA 133
# R A+ IA
# Sbjct: 136 RQALAEIA 143
#
#
# >Rv3038c
# Length = 327
#
# Score = 29.3 bits (64), Expect = 3.5
# Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 8/58 (13%)
#
# Query: 71 DISDGMLTQAREKATTRGVDNVAFDTGRFREPN---YDGDA-DVVVSNFAMHHLSDAE 124
# D+S GM+ A G+D GR + YD DA D+VV + +HH+ D E
# Sbjct: 108 DLSPGMVKVATRNGQALGLDI----DGRVADAEGIPYDDDAFDLVVGHAVLHHIPDVE 161
#
#
# >Rv0089
# Length = 197
#
# Score = 29.3 bits (64), Expect = 3.5
# Identities = 26/94 (27%), Positives = 37/94 (38%), Gaps = 4/94 (4%)
#
# Query: 42 GADTVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFRE 101
# G VLD V DI +L +A+ + + + D
# Sbjct: 22 GTQCVLDVGCGDGLLAARLARRIPYVTAVDIDAPVLRRAQTRFANAPIRWLHADIMTAEL 81
#
# Query: 102 PNYDGDADVVVSNFAMHHLSDAEKRSAIDTIAGL 135
# PN DA VVSN A+HH+ D R+A+ + GL
# Sbjct: 82 PNAGFDA--VVSNAALHHIEDT--RTALSRLGGL 111
#
#
# >BS_yxbB
# Length = 244
#
# Score = 29.3 bits (64), Expect = 3.5
# Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
#
# Query: 71 DISDGMLTQAREKATTRGVDN-VAFDTGRFREPNY-DGDADVVVSNFAMHHLSDAEK 125
# DI+ M A+E+A GV + ++FD +Y D AD +VS +HH D K
# Sbjct: 66 DINPAMHEIAQEEAKKSGVSSLISFDLEDVHHLSYADQYADFIVSYSCLHHWEDVVK 122
#
#
# >TM0938
# Length = 254
#
# Score = 29.3 bits (64), Expect = 3.5
# Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
#
# Query: 32 ALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQAREKATTRGVDN 91
# A +LE+ + G VLD +VVG D+S ML AR++A + +
# Sbjct: 29 AKILENFHIRGKK-VLDVACGEGTFAVEIAKQGFKVVGVDLSSEMLKFARKRAKEESI-S 86
#
# Query: 92 VAFDTGRFREPNYDGDADVVVSNF-AMHHLSD 122
# V F RE ++ + D+V F ++++L D
# Sbjct: 87 VVFLKKDMRELDFHEEFDIVTCWFDSLNYLLD 118
#
#
# >PH0226
# Length = 227
#
# Score = 29.3 bits (64), Expect = 3.5
# Identities = 22/59 (37%), Positives = 32/59 (53%), Gaps = 2/59 (3%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNY-DGDADVVVSNFAMHHLSDAE 124
# VVG DIS+ M+ +ARE A +R NV F G R+ ++ D D V+ ++ H E
# Sbjct: 63 VVGVDISEDMIRKAREYAKSR-ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLE 120
#
#
# >PM1686
# Length = 268
#
# Score = 28.9 bits (63), Expect = 4.5
# Identities = 20/61 (32%), Positives = 30/61 (48%), Gaps = 2/61 (3%)
#
# Query: 67 VVGRDISDGMLTQAREKATTRG-VDNVAFDTGRFRE-PNYDGDADVVVSNFAMHHLSDAE 124
# V+ DI+D ML REK G V NV + P D D V+ +F + +++D +
# Sbjct: 108 VILADINDSMLRVGREKLRNLGVVGNVNYVQANAEALPFPDNTFDCVIISFGLRNVTDKD 167
#
# Query: 125 K 125
# K
# Sbjct: 168 K 168
#
#
# >PM0985
# Length = 241
#
# Score = 28.9 bits (63), Expect = 4.5
# Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
#
# Query: 66 RVVGRDISDGMLTQAREKAT----TRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLS 121
# +++G D S M+ + R+ + T VD + D N A +V+ NF + L
# Sbjct: 83 KIIGVDNSQPMVDRCRQHVSAYQSTIPVDIICDDIRHIEIEN----ASMVILNFTLQFLP 138
#
# Query: 122 DAEKRSAIDTI-AGLNPHRI-VLGDVMLFGGPNPDA 155
# ++RS + I GL P+ I VL + F N +A
# Sbjct: 139 PEDRRSLLSKIYQGLQPNGILVLSEKFHFEDQNMNA 174
#
#
# >L0041
# Length = 512
#
# Score = 28.9 bits (63), Expect = 4.5
# Identities = 18/49 (36%), Positives = 21/49 (42%)
#
# Query: 144 DVMLFGGPNPDAPFYSPAVDDPATVGVLADAFTDAGYAVTAVEMVHEQV 192
# DV G PN D + +D A G L A DA YA T V + V
# Sbjct: 163 DVAFLGTPNADEMGNANGMDGKAPFGSLGYALMDAQYADTVVAITDSLV 211
#
#
# >TP0114
# Length = 331
#
# Score = 28.9 bits (63), Expect = 4.5
# Identities = 16/45 (35%), Positives = 22/45 (48%)
#
# Query: 72 ISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFA 116
# ISD + + R+ T G+D+V T E N+ DV VS A
# Sbjct: 126 ISDIIDSSVRDIITVNGLDDVVRSTNAINESNHSEQFDVPVSQLA 170
#
#
# >Rv3290c
# Length = 449
#
# Score = 28.9 bits (63), Expect = 4.5
# Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
#
# Query: 148 FGGPNPDAPFYSPAVDDPATVGVLADAFTDAGYAVTAVEMVHEQVGVLVAE 198
# F P DAP+ P +D+PA + A+A A A E + VAE
# Sbjct: 191 FDWPRIDAPYMRPGLDEPAMAALEAEALRQAR---AAFETRPHDIACFVAE 238
#
#
# >DRA0327
# Length = 236
#
# Score = 28.9 bits (63), Expect = 4.5
# Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 16/141 (11%)
#
# Query: 3 KTLEEHAARFDDVAA-------AYDDDQTPEYNECVALVLEHADVGGADTVLDXXXXXXX 55
# + LE A+F+ V A Y + P A+ L GG D
# Sbjct: 27 RQLERTYAQFEQVNALVSGWEVVYRRELRPRLRRDRAMTLLDIGCGGGDLARQLLRWAAR 86
#
# Query: 56 XXXXXXXXXXRVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDA-DVVVSN 114
# RV+G D + + A+ + G+ A +G G+ D +VSN
# Sbjct: 87 DGFSL-----RVLGIDADERAIHYAQAQPPRSGLSFRAALSGELLR---GGERFDFIVSN 138
#
# Query: 115 FAMHHLSDAEKRSAIDTIAGL 135
# +HHL+DAE + GL
# Sbjct: 139 HVLHHLTDAEVPELLRDCEGL 159
#
#
# >L28696
# Length = 244
#
# Score = 28.1 bits (61), Expect = 7.7
# Identities = 19/46 (41%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
#
# Query: 66 RVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVV 111
# +V G DIS+ MLT A +KA G + F G RE + G D V
# Sbjct: 58 KVTGLDISEEMLTLASKKARQAGY-QLDFTAGDMRELSGLGKFDAV 102
#
#
# >VNG0425G
# Length = 238
#
# Score = 28.1 bits (61), Expect = 7.7
# Identities = 39/183 (21%), Positives = 64/183 (34%), Gaps = 22/183 (12%)
#
# Query: 11 RFDDVAAAYDDDQTPEYNECVALVLEHADVGGADTVLDXXXXXXXXXXXXXXXXXRVVGR 70
# R D+ ++ P + + LV+ H V GAD VLD V
# Sbjct: 51 RGPDLFNHFERTGAPMMPKDIGLVMGHTGVSGADRVLDAGTGTGVLAAYLGRAGADVTTY 110
#
# Query: 71 DISDGMLTQAREKATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLSDAEKRSAID 130
# + ARE + GV D R + D D + + + + A D
# Sbjct: 111 EQDADFAAVARENMSLAGVS----DAVSVRAGDVTADLDAL----GTFDVLTLDTQDAPD 162
#
# Query: 131 TIAGLNPHRIVLGDVMLFGGPNPDAPFYSPAVDDPATVGVLADAFTDAGYA-VTAVEMVH 189
# +A + D+++ GG YSP V++ A DAG + A+E +
# Sbjct: 163 VVAHAD-------DLLVSGG---QVAVYSPFVENARAT---TQAARDAGLVDIDAMETIQ 209
#
# Query: 190 EQV 192
# ++
# Sbjct: 210 RRM 212
#
#
# >BS_yefA
# Length = 459
#
# Score = 28.1 bits (61), Expect = 7.7
# Identities = 16/63 (25%), Positives = 25/63 (39%)
#
# Query: 35 LEHADVGGADTVLDXXXXXXXXXXXXXXXXXRVVGRDISDGMLTQAREKATTRGVDNVAF 94
# LE+A++ G +TV+D +V G +I + A+ A G N F
# Sbjct: 304 LEYAELQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEF 363
#
# Query: 95 DTG 97
# G
# Sbjct: 364 AVG 366
#
#
# >TM0318
# Length = 207
#
# Score = 28.1 bits (61), Expect = 7.7
# Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
#
# Query: 67 VVGRDISDGMLTQARE---KATTRGVDNVAFDTGRFREPNYDGDADVVVSNFAMHHLSDA 123
# VVG DIS+GML +E K + V + D P DG+ D VVS F + D
# Sbjct: 62 VVGVDISEGMLRVCQERLKKFPEKKVKLLRADVQNL--PFSDGEYDCVVSTFVFCTVPDP 119
#
# Query: 124 EK 125
# K
# Sbjct: 120 VK 121
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.317 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,542,916
Number of Sequences: 108091
Number of extensions: 497068
Number of successful extensions: 1267
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 44
length of query: 200
length of database: 33,061,072
effective HSP length: 100
effective length of query: 100
effective length of database: 22,251,972
effective search space: 2225197200
effective search space used: 2225197200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)