R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 21 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|4580456|gb|AAD24380.1|AC006081_24 (AC006081) unknown protein [Arabidopsis
thaliana]
Length = 490
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 490
0 150 300 450
Plus Strand HSPs:
Score = 160 (56.3 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 59/147 (40%), Positives = 74/147 (50%), Frame = +1
Query: 4 VPMMFPGIQQYMPAM--GMGVGMG-MGMEMGMNRPV-----MPFPNMLPGSA-LPAATAA 156
+ MM G MP M GM M M M MGMN+P+ MPFPNML LP T
Sbjct: 337 IQMMSMGCGM-MPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHM 395
Query: 157 AAHLGPRFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQY 336
A GP++ P H A D SR+ NQ + TS P P +TDPYQQ+
Sbjct: 396 AGS-GPQY---PVH-----ASDPSRVFVPNQQYDP--TSGQPQYP-----AGYTDPYQQF 439
Query: 337 LGPHQMQFQLIQNQAMNQPNVSKPSNNGGPANPENH 444
G H Q QNQA + P+ S+ S++ + NH
Sbjct: 440 RGLHPTQPPQFQNQATSYPSSSRVSSSKESEDHGNH 475
Score = 138 (48.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 53/146 (36%), Positives = 68/146 (46%), Frame = +1
Query: 4 VPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPV-----MPFPNMLPGSA-LPAATAAAAH 165
+PMM+PG+QQYMP M MG MGMN+P+ MPFPNML LP T A
Sbjct: 347 MPMMYPGMQQYMPHMAMG--------MGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGS 398
Query: 166 LGPRFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGP 345
GP++ P H A D SR+ NQ + TS P P P P
Sbjct: 399 -GPQY---PVH-----ASDPSRVFVPNQQYDP--TSGQPQYPAGYTDPYQQFRGLHPTQP 447
Query: 346 HQMQFQLIQNQAMNQPNVSKPSNNGGPANPEN 441
Q Q Q + ++ + SK S + G E+
Sbjct: 448 PQFQNQATSYPSSSRVSSSKESEDHGNHTTES 479
>gi|7485539|pir||T04519 hypothetical protein F16A16.90 - Arabidopsis thaliana
>gi|4218118|emb|CAA22972.1| (AL035353) putative protein
[Arabidopsis thaliana] >gi|7269735|emb|CAB81468.1| (AL161573)
putative protein [Arabidopsis thaliana]
Length = 478
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 478
0 150 300 450
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 41/118 (34%), Positives = 56/118 (47%), Frame = +1
Query: 4 VPMMFPGIQQYMPAMGMGVGMGM--GMEMGMNRPVMPF-PNMLPGSALPAATAAAAHLGP 174
V MM G P M G M M MNRP PF P PG++ P A A +GP
Sbjct: 345 VEMMSTGQGMMSPMMNAGNTQQFMPHMAMDMNRPP-PFIP--FPGTSFPMP-AQMAGVGP 400
Query: 175 RFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQM 354
+ P + P++ D SR++ + N P NQ + P + +PY Q+ GPHQ+
Sbjct: 401 SYPAPRYPFPNIQTFDPSRVRLPSPQPN--------PVSNQPQFPAYMNPYSQFAGPHQL 452
Query: 355 Q 357
Q
Sbjct: 453 Q 453
>gi|7485538|pir||T04518 hypothetical protein F16A16.80 - Arabidopsis thaliana
(fragment) >gi|4218117|emb|CAA22971.1| (AL035353) putative protein
(fragment) [Arabidopsis thaliana] >gi|7269736|emb|CAB81469.1|
(AL161573) putative protein (fragment) [Arabidopsis thaliana]
Length = 864
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 864
0 150 300 450 600 750
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 37/98 (37%), Positives = 47/98 (47%), Frame = +1
Query: 64 MGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPRFSMPPFHMPHVPAPDSSRMQAA 243
M MGM+ GMNRP PF PG P A +GP + + P A D SR+
Sbjct: 456 MAMGMK-GMNRPP-PFVPF-PGKTFPRPGHMAG-VGPSYPALRYPFPDTQASDLSRVHVP 511
Query: 244 NQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQ 357
+ N P PNQ R P + +PY Q++G HQMQ
Sbjct: 512 SLHSN--------PVPNQPRFPAYINPYSQFVGLHQMQ 541
Score = 90 (31.7 bits), Expect = 2.3, P = 0.90
Identities = 30/84 (35%), Positives = 37/84 (44%), Frame = +1
Query: 7 PMMFPG-IQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPRFS 183
PMM G QQ+MP M MG+ GMNRP PF PG P A +GP +
Sbjct: 442 PMMHEGNTQQFMPHMAMGM-------KGMNRPP-PFVPF-PGKTFPRPGHMAG-VGPSYP 491
Query: 184 MPPFHMPHVPAPDSSRMQAANQSDN 258
+ P A D SR+ + N
Sbjct: 492 ALRYPFPDTQASDLSRVHVPSLHSN 516
>gi|1562534|gb|AAC60373.1| (U68380) csdp [Gallus gallus]
Length = 286
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | | 286
0 50 100 150 200 250
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.012, P = 0.012
Identities = 49/146 (33%), Positives = 68/146 (46%), Frame = +1
Query: 13 MFPGIQQY---M--PAMGMGVGM-GMGMEMGMNRPVMPFPNMLPGSALP-AATAAAAHLG 171
M PG Q Y M P +G GM G+ M G RP +PN +++P ++++ ++G
Sbjct: 110 MGPGPQNYGSGMRPPPNSLGPGMPGINMGPGAGRP---WPNPSSANSIPYSSSSPGTYVG 166
Query: 172 PRFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNF-----TDPYQQY 336
P P P +P+P S N SDN + T P P SR NF +D
Sbjct: 167 PPGGGGPPGTPIMPSPADS----TNSSDN-IYTMINPVPPAGSR-SNFPMGPGSDGPMGG 220
Query: 337 LG---PHQMQFQLIQNQAMNQPNVSKPSNNGGPANP 435
+G PH M L P S P+N G +NP
Sbjct: 221 MGGMEPHHMNGSLGSGDIDGLPKNS-PNNISGISNP 255
>gi|7715449|gb|AAF68040.1|AF252658_1 (AF252658) defective chorion 1 [Drosophila
simulans] >gi|7715455|gb|AAF68043.1|AF252661_1 (AF252661) defective
chorion 1 [Drosophila simulans]
Length = 475
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 475
0 150 300 450
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.035, P = 0.035
Identities = 38/136 (27%), Positives = 57/136 (41%), Frame = +1
Query: 10 MMFPGIQQ--YMPAMGMGVGMGMGMEMGMNRPVMP-FPNMLPGSA-LPAATAAAAHLGPR 177
M +P + Q +P+M +G +G + P MP P +L +A +PA A A P
Sbjct: 131 MNWPALPQDFQLPSMDLGPQVGSFLSQLPAMPAMPAMPGLLGAAAPVPAPAPAPAAAPPX 190
Query: 178 FSMPPFHMPHVPAPDSSRMQAANQSD-NNMVTSAGPPDPNQSR-----IPNFTDPYQQYL 339
P P PAPD+++ Q+ N T P + + S +P F P ++
Sbjct: 191 APAPAADSPAPPAPDAAQPAILGQAALQNAFTFLNPSNFDASSLLGQSVPTFAPPNLDFV 250
Query: 340 GPHQMQFQLIQNQAMNQP 393
QMQ Q QP
Sbjct: 251 A--QMQRQFFPGMTPAQP 266
>gi|7715451|gb|AAF68041.1|AF252659_1 (AF252659) defective chorion 1 [Drosophila
simulans]
Length = 475
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 475
0 150 300 450
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.035, P = 0.035
Identities = 38/136 (27%), Positives = 57/136 (41%), Frame = +1
Query: 10 MMFPGIQQ--YMPAMGMGVGMGMGMEMGMNRPVMP-FPNMLPGSA-LPAATAAAAHLGPR 177
M +P + Q +P+M +G +G + P MP P +L +A +PA A A P
Sbjct: 131 MNWPALPQDFQLPSMDLGPQVGSFLSQLPAMPAMPAMPGLLGAAAPVPAPAPAPAAAPPX 190
Query: 178 FSMPPFHMPHVPAPDSSRMQAANQSD-NNMVTSAGPPDPNQSR-----IPNFTDPYQQYL 339
P P PAPD+++ Q+ N T P + + S +P F P ++
Sbjct: 191 APAPAADSPAPPAPDAAQPAILGQAALQNAFTFLNPSNFDASSLLGQSVPTFAPPNLDFV 250
Query: 340 GPHQMQFQLIQNQAMNQP 393
QMQ Q QP
Sbjct: 251 A--QMQRQFFPGMTPAQP 266
>gi|11416674 ref|XP_003771.1| single-stranded-DNA-binding protein [Homo
sapiens]
Length = 202
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.041, P = 0.040
Identities = 48/154 (31%), Positives = 71/154 (46%), Frame = +1
Query: 7 PMMFPG-IQQYMPAMGMGVGM-GMGMEMGMNRPVMPFPNMLPGSALPAATAAAA-HLGPR 177
P + G ++ + A+G G GM GM M G RP +PN +++P ++A+ ++GP
Sbjct: 30 PQNYGGAMRPPLNALG-GPGMPGMNMGPGGGRP---WPNPTNANSIPYSSASPGNYVGPP 85
Query: 178 FSMPPFHMPHVPAPDSSRMQAANQSDNNMVT--SAGPPDPNQSRIPNF--TDPYQQYLG- 342
P P +P+P S N DN M T +A PP PN+ P +D LG
Sbjct: 86 GGGGPPGTPIMPSPADS----TNSGDN-MYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG 140
Query: 343 --PHQMQFQL----IQNQAMNQPNVSKPSNNGGPANPENH*SG 453
H M L + + + N PN SN G + G
Sbjct: 141 MESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGG 183
>gi|7715459|gb|AAF68045.1|AF252663_1 (AF252663) defective chorion 1 [Drosophila
simulans] >gi|7715461|gb|AAF68046.1|AF252664_1 (AF252664) defective
chorion 1 [Drosophila simulans]
Length = 475
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 475
0 150 300 450
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.048, P = 0.047
Identities = 38/136 (27%), Positives = 57/136 (41%), Frame = +1
Query: 10 MMFPGIQQ--YMPAMGMGVGMGMGMEMGMNRPVMP-FPNMLPGSA-LPAATAAAAHLGPR 177
M +P + Q +P+M +G +G + P MP P +L +A +PA A A P
Sbjct: 131 MNWPALPQDFQLPSMDLGPQVGSFLSQLPAMPAMPSMPGLLGAAAPVPAPAPAPAAAPPX 190
Query: 178 FSMPPFHMPHVPAPDSSRMQAANQSD-NNMVTSAGPPDPNQSR-----IPNFTDPYQQYL 339
P P PAPD+++ Q+ N T P + + S +P F P ++
Sbjct: 191 APAPAADPPAPPAPDAAQPAILGQAALQNAFTFLNPSNFDASSLLGQSVPTFAPPNLDFV 250
Query: 340 GPHQMQFQLIQNQAMNQP 393
QMQ Q QP
Sbjct: 251 A--QMQRQFFPGMTPAQP 266
>gi|8922374 ref|NP_060540.1| hypothetical protein FLJ10355 [Homo sapiens]
>gi|7022334|dbj|BAA91561.1| (AK001217) unnamed protein product
[Homo sapiens]
Length = 278
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | | | 278
0 50 100 150 200 250
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.048, P = 0.047
Identities = 48/146 (32%), Positives = 67/146 (45%), Frame = +1
Query: 13 MFPGIQQY---M--PAMGMGVGM-GMGMEMGMNRPVMPFPNMLPGSALP-AATAAAAHLG 171
M PG Q Y M P +G M G+ M G RP +PN +++P ++++ ++G
Sbjct: 102 MGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRP---WPNPNSANSIPYSSSSPGTYVG 158
Query: 172 PRFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNF-----TDPYQQY 336
P P P +P+P S N SDN + T P P SR NF +D
Sbjct: 159 PPGGGGPPGTPIMPSPADS----TNSSDN-IYTMINPVPPGGSR-SNFPMGPGSDGPMGG 212
Query: 337 LG---PHQMQFQLIQNQAMNQPNVSKPSNNGGPANP 435
+G PH M L P S P+N G +NP
Sbjct: 213 MGGMEPHHMNGSLGSGDIDGLPKNS-PNNISGISNP 247
>gi|11423404 ref|XP_001652.1| hypothetical protein FLJ10355 [Homo sapiens]
Length = 298
Frame 1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | | 298
0 50 100 150 200 250
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.055, P = 0.054
Identities = 48/146 (32%), Positives = 67/146 (45%), Frame = +1
Query: 13 MFPGIQQY---M--PAMGMGVGM-GMGMEMGMNRPVMPFPNMLPGSALP-AATAAAAHLG 171
M PG Q Y M P +G M G+ M G RP +PN +++P ++++ ++G
Sbjct: 122 MGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRP---WPNPNSANSIPYSSSSPGTYVG 178
Query: 172 PRFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNF-----TDPYQQY 336
P P P +P+P S N SDN + T P P SR NF +D
Sbjct: 179 PPGGGGPPGTPIMPSPADS----TNSSDN-IYTMINPVPPGGSR-SNFPMGPGSDGPMGG 232
Query: 337 LG---PHQMQFQLIQNQAMNQPNVSKPSNNGGPANP 435
+G PH M L P S P+N G +NP
Sbjct: 233 MGGMEPHHMNGSLGSGDIDGLPKNS-PNNISGISNP 267
>gi|7301613|gb|AAF56732.1| (AE003761) CG12881 gene product [Drosophila
melanogaster]
Length = 104
Frame 1 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | | 104
0 20 40 60 80 100
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.10, P = 0.095
Identities = 26/78 (33%), Positives = 33/78 (42%), Frame = +1
Query: 181 SMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQF 360
++PP PH P P Q A + +A PP P P QQ PHQ+Q
Sbjct: 13 AVPPLGDPHPPLPHQQLQQEAAAA---AAANAAPPAP----------PQQQQPPPHQLQQ 59
Query: 361 QLIQNQAMNQPNVSKPSN 414
Q Q Q + Q KP+N
Sbjct: 60 QQPQQQQLQQ----KPAN 73
>gi|6841454|gb|AAF29080.1|AF161465_1 (AF161465) HSPC116 [Homo sapiens]
Length = 314
Frame 1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | | | 314
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.11, P = 0.10
Identities = 48/154 (31%), Positives = 71/154 (46%), Frame = +1
Query: 7 PMMFPG-IQQYMPAMGMGVGM-GMGMEMGMNRPVMPFPNMLPGSALPAATAAAA-HLGPR 177
P + G ++ + A+G G GM GM M G RP +PN +++P ++A+ ++GP
Sbjct: 142 PQNYGGAMRPPLNALG-GPGMPGMNMGPGGGRP---WPNPTNANSIPYSSASPGNYVGPP 197
Query: 178 FSMPPFHMPHVPAPDSSRMQAANQSDNNMVT--SAGPPDPNQSRIPNF--TDPYQQYLG- 342
P P +P+P S N DN M T +A PP PN+ P +D LG
Sbjct: 198 GGGGPPGTPIMPSPADS----TNSGDN-MYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG 252
Query: 343 --PHQMQFQL----IQNQAMNQPNVSKPSNNGGPANPENH*SG 453
H M L + + + N PN SN G + G
Sbjct: 253 MESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGG 295
>gi|7291971|gb|AAF47387.1| (AE003468) CG13885 gene product [Drosophila
melanogaster]
Length = 71
Frame -2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.13, P = 0.12
Identities = 14/40 (35%), Positives = 22/40 (55%), Frame = -2
Query: 162 SSSCSCRWQSRTR*H-IGKRHYRSVHSHFHTHTHSNPHSH 46
+++ + Q+ + H I H+ HSH H H HS+PH H
Sbjct: 9 AAAAAAHVQNHSMHHPIHSHHHHHSHSHPHPHPHSHPHHH 48
Score = 67 (23.6 bits), Expect = 1.4, P = 0.75
Identities = 10/18 (55%), Positives = 12/18 (66%), Frame = -2
Query: 90 HSHFHTHTHSNPHSHCWH 37
H H H+H H +PHSH H
Sbjct: 30 HHHSHSHPHPHPHSHPHH 47
>gi|7106423 ref|NP_036578.1| single-stranded-DNA-binding protein; hypothetical
protein [Homo sapiens] >gi|7512717|pir||T12470 hypothetical protein
DKFZp564C0362.1 - human >gi|5262487|emb|CAB45699.1| (AL080076)
hypothetical protein [Homo sapiens]
Length = 361
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 361
0 150 300
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.13, P = 0.12
Identities = 48/154 (31%), Positives = 71/154 (46%), Frame = +1
Query: 7 PMMFPG-IQQYMPAMGMGVGM-GMGMEMGMNRPVMPFPNMLPGSALPAATAAAA-HLGPR 177
P + G ++ + A+G G GM GM M G RP +PN +++P ++A+ ++GP
Sbjct: 189 PQNYGGAMRPPLNALG-GPGMPGMNMGPGGGRP---WPNPTNANSIPYSSASPGNYVGPP 244
Query: 178 FSMPPFHMPHVPAPDSSRMQAANQSDNNMVT--SAGPPDPNQSRIPNF--TDPYQQYLG- 342
P P +P+P S N DN M T +A PP PN+ P +D LG
Sbjct: 245 GGGGPPGTPIMPSPADS----TNSGDN-MYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG 299
Query: 343 --PHQMQFQL----IQNQAMNQPNVSKPSNNGGPANPENH*SG 453
H M L + + + N PN SN G + G
Sbjct: 300 MESHHMNGSLGSGDMDSISKNSPNNMSLSNQPGTPRDDGEMGG 342
>gi|4689144|gb|AAD27781.1|AF077048_1 (AF077048) single strand DNA-binding
protein [Homo sapiens]
Length = 370
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 370
0 150 300
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.19, P = 0.17
Identities = 46/141 (32%), Positives = 65/141 (46%), Frame = +1
Query: 43 AMGMGVGM-GMGMEMGMNRPVMPFPNMLPGSALPAATAAAA-HLGPRFSMPPFHMPHVPA 216
A+G G GM GM M G RP +PN +++P ++A+ ++GP P P +P+
Sbjct: 211 ALG-GPGMPGMNMGPGGGRP---WPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPS 266
Query: 217 PDSSRMQAANQSDNNMVT--SAGPPDPNQSRIPNF--TDPYQQYLG---PHQMQFQL--- 366
P S N DN M T +A PP PN+ P +D LG H M L
Sbjct: 267 PADS----TNSGDN-MYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGMESHHMNGSLGSG 321
Query: 367 -IQNQAMNQPNVSKPSNNGGPANPENH*SG 453
+ + + N PN SN G + G
Sbjct: 322 DMDSISKNSPNNMSLSNQPGTPRDDGEMGG 351
>gi|5032069 ref|NP_005841.1| splicing factor 3b, subunit 4, 49kD;
spliceosome-associated protein (U2 snRNP) [Homo sapiens]
>gi|11426070 ref|XP_001943.1| splicing factor 3b, subunit 4, 49kD
[Homo sapiens] >gi|2500587|sp|Q15427|SP49_HUMAN SPLICEOSOME
ASSOCIATED PROTEIN 49 (SAP 49) (SF3B53) >gi|1082799|pir||A54964
spliceosome-associated protein SAP-49 - human
>gi|556217|gb|AAA60300.1| (L35013) spliceosomal protein [Homo
sapiens]
Length = 424
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 424
0 150 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.30, P = 0.26
Identities = 38/113 (33%), Positives = 47/113 (41%), Frame = +1
Query: 97 PVMPFPNMLPGSA---LPAA-TAAAAHLGPRFSMP-PFHMPHVPAPDSSRMQAANQSDNN 261
P MP P M PG+A P+A T A H G S P PF +P P S+MQ A+ +
Sbjct: 259 PAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHG 318
Query: 262 MV-TSAGPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQNQAMNQPNVSKPSNNGGPANP 435
+ AGPP P P + GP M P P + GP P
Sbjct: 319 LGHPHAGPPGSGGQPPPR-PPPGMPHPGPPPM------GMPPRGPPFGSPMGHPGPMPP 370
>gi|7504577|pir||T22888 hypothetical protein F58A3.1b - Caenorhabditis elegans
>gi|3877837|emb|CAB02672.1| (Z81017) contains similarity to Pfam
domain: PF01803 (LIM-domain binding protein), Score=1133.5,
E-value=0, N=1~cDNA EST yk89b5.3 comes from this gene~cDNA EST
yk89b5.5 comes from this gene~cDNA EST yk449f3.3 comes from this
gene~cDNA EST yk449f3.5 com>
Length = 578
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 578
0 150 300 450
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.35, P = 0.29
Identities = 44/136 (32%), Positives = 65/136 (47%), Frame = +1
Query: 19 PGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPG-SALPAATAAAAHLGPRFSMPPF 195
PG QQ+MP MG M M M+ P P + G +P + A+ P ++PP
Sbjct: 431 PG-QQHMPPHSMGSQMPTSMHNPMHMP----PGSMQGHGGMPPMPSTMANQMPPPNLPPH 485
Query: 196 HMPH-VPAPDSSRMQA--------ANQSDNNMVTSAGPPDPNQSRIP-NFTDPYQQYLGP 345
M + +P MQ S+ NM+ S PP S++P + ++P P
Sbjct: 486 TMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNMMGSGMPPMSMSSQMPGSMSNPM-----P 540
Query: 346 HQMQFQLIQNQAMNQPNVSKPSNNGGP 426
+QM + NQ M PN S+ + GGP
Sbjct: 541 NQMPGGMQMNQ-MPPPNYSQYT--GGP 564
>gi|1711217|gb|AAB38367.1| (U80221) F58A3.1b [Caenorhabditis elegans]
Length = 579
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 579
0 150 300 450
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.35, P = 0.29
Identities = 44/136 (32%), Positives = 65/136 (47%), Frame = +1
Query: 19 PGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPG-SALPAATAAAAHLGPRFSMPPF 195
PG QQ+MP MG M M M+ P P + G +P + A+ P ++PP
Sbjct: 432 PG-QQHMPPHSMGSQMPTSMHNPMHMP----PGSMQGHGGMPPMPSTMANQMPPPNLPPH 486
Query: 196 HMPH-VPAPDSSRMQA--------ANQSDNNMVTSAGPPDPNQSRIP-NFTDPYQQYLGP 345
M + +P MQ S+ NM+ S PP S++P + ++P P
Sbjct: 487 TMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNMMGSGMPPMSMSSQMPGSMSNPM-----P 541
Query: 346 HQMQFQLIQNQAMNQPNVSKPSNNGGP 426
+QM + NQ M PN S+ + GGP
Sbjct: 542 NQMPGGMQMNQ-MPPPNYSQYT--GGP 565
>gi|7504576|pir||T22885 hypothetical protein F58A3.1a - Caenorhabditis elegans
>gi|1711215|gb|AAB38366.1| (U80220) F58A3.1a [Caenorhabditis
elegans] >gi|3877834|emb|CAB02669.1| (Z81017) predicted using
Genefinder~contains similarity to Pfam domain: PF01803 (LIM-domain
binding protein), Score=1188.8, E-value=0, N=1~cDNA EST CEESO06F
comes from this gene~cDNA EST yk61f12.3 comes from this gene~cDNA
EST yk61f12.5 comes from this>
Length = 592
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 592
0 150 300 450
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.36, P = 0.30
Identities = 44/136 (32%), Positives = 65/136 (47%), Frame = +1
Query: 19 PGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPG-SALPAATAAAAHLGPRFSMPPF 195
PG QQ+MP MG M M M+ P P + G +P + A+ P ++PP
Sbjct: 445 PG-QQHMPPHSMGSQMPTSMHNPMHMP----PGSMQGHGGMPPMPSTMANQMPPPNLPPH 499
Query: 196 HMPH-VPAPDSSRMQA--------ANQSDNNMVTSAGPPDPNQSRIP-NFTDPYQQYLGP 345
M + +P MQ S+ NM+ S PP S++P + ++P P
Sbjct: 500 TMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNMMGSGMPPMSMSSQMPGSMSNPM-----P 554
Query: 346 HQMQFQLIQNQAMNQPNVSKPSNNGGP 426
+QM + NQ M PN S+ + GGP
Sbjct: 555 NQMPGGMQMNQ-MPPPNYSQYT--GGP 578
>gi|7504578|pir||T22890 hypothetical protein F58A3.1c - Caenorhabditis elegans
>gi|5824513|emb|CAB54257.1| (Z81017) contains similarity to Pfam
domain: PF01803 (LIM-domain binding protein), Score=1133.5,
E-value=0, N=1 [Caenorhabditis elegans]
Length = 629
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 629
0 150 300 450 600
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.39, P = 0.32
Identities = 44/136 (32%), Positives = 65/136 (47%), Frame = +1
Query: 19 PGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPG-SALPAATAAAAHLGPRFSMPPF 195
PG QQ+MP MG M M M+ P P + G +P + A+ P ++PP
Sbjct: 482 PG-QQHMPPHSMGSQMPTSMHNPMHMP----PGSMQGHGGMPPMPSTMANQMPPPNLPPH 536
Query: 196 HMPH-VPAPDSSRMQA--------ANQSDNNMVTSAGPPDPNQSRIP-NFTDPYQQYLGP 345
M + +P MQ S+ NM+ S PP S++P + ++P P
Sbjct: 537 TMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNMMGSGMPPMSMSSQMPGSMSNPM-----P 591
Query: 346 HQMQFQLIQNQAMNQPNVSKPSNNGGP 426
+QM + NQ M PN S+ + GGP
Sbjct: 592 NQMPGGMQMNQ-MPPPNYSQYT--GGP 615
>gi|85126|pir||A28826 regulatory protein K10, oocyte-specific - fruit fly
(Drosophila melanogaster) >gi|295771|emb|CAA31321.1| (X12836) K10
protein [Drosophila melanogaster]
Length = 463
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 463
0 150 300 450
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.44, P = 0.36
Identities = 26/79 (32%), Positives = 37/79 (46%), Frame = +1
Query: 181 SMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQF 360
SM P+P+ + + NQ + P PNQ + PN QQ+L P+Q Q
Sbjct: 121 SMKGIKQQQHPSPNQQQPPSPNQQQHPSPNQQQHPSPNQQQHPNSNQ--QQHLSPNQQQG 178
Query: 361 QLIQNQAMNQPNVSK-PSNN 417
++ NQ N N S+ P NN
Sbjct: 179 KM-NNQNNNHMNQSQQPFNN 197
Score = 82 (28.9 bits), Expect = 9.2, P = 1.0
Identities = 26/88 (29%), Positives = 34/88 (38%), Frame = +1
Query: 178 FSMPPFHMPH--VPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQ 351
FS PP H V +P M+ Q + PP PNQ + P+ QQ+ P+Q
Sbjct: 102 FSSPPPGFKHNQVGSPKKKSMKGIKQQQHPSPNQQQPPSPNQQQHPSPNQ--QQHPSPNQ 159
Query: 352 MQFQLIQNQAMNQPNVSKPSNNGGPANPEN 441
Q Q PN + N N N
Sbjct: 160 QQHPNSNQQQHLSPNQQQGKMNNQNNNHMN 189
>gi|3183532|sp|P13468|K10_DROME DNA-BINDING PROTEIN K10 (FEMALE STERILE PROTEIN
K10) >gi|7512021|pir||T13425 regulatory protein K10,
oocyte-specific - fruit fly (Drosophila melanogaster)
>gi|2661570|emb|CAA15702.1| (AL009195) EG:30B8.5 [Drosophila
melanogaster] >gi|7290297|gb|AAF45758.1| (AE003423) fs(1)K10 gene
product [Drosophila melanogaster]
Length = 463
Frame 1 hits (HSPs): ____________
Annotated Domains: __________________________ __ _________________
__________________________________________________
Database sequence: | | | | | 463
0 150 300 450
__________________
Annotated Domains:
Entrez Domain: 7 X APPROXIMATE TANDEM REPEATS. 87..142
Entrez Repetitive region: 1. 87..94
Entrez Repetitive region: 2. 95..102
Entrez Repetitive region: 3. 103..110
Entrez Repetitive region: 4. 111..118
Entrez Repetitive region: 5. 119..126
Entrez Repetitive region: 6. 127..134
Entrez Repetitive region: 7. 135..142
Entrez Domain: POLY-PRO. 284..290
Entrez dna-binding site: H-T-H MOTIF (POTENTIAL 397..416
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 5..198
PRODOM PD082878: K10_DROME 200..234
PRODOM PD091760: K10_DROME 311..462
__________________
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.44, P = 0.36
Identities = 26/79 (32%), Positives = 37/79 (46%), Frame = +1
Query: 181 SMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQF 360
SM P+P+ + + NQ + P PNQ + PN QQ+L P+Q Q
Sbjct: 121 SMKGIKQQQHPSPNQQQPPSPNQQQHPSPNQQQHPSPNQQQHPNSNQ--QQHLSPNQQQG 178
Query: 361 QLIQNQAMNQPNVSK-PSNN 417
++ NQ N N S+ P NN
Sbjct: 179 KM-NNQNNNHMNQSQQPFNN 197
Score = 82 (28.9 bits), Expect = 9.2, P = 1.0
Identities = 26/88 (29%), Positives = 34/88 (38%), Frame = +1
Query: 178 FSMPPFHMPH--VPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQ 351
FS PP H V +P M+ Q + PP PNQ + P+ QQ+ P+Q
Sbjct: 102 FSSPPPGFKHNQVGSPKKKSMKGIKQQQHPSPNQQQPPSPNQQQHPSPNQ--QQHPSPNQ 159
Query: 352 MQFQLIQNQAMNQPNVSKPSNNGGPANPEN 441
Q Q PN + N N N
Sbjct: 160 QQHPNSNQQQHLSPNQQQGKMNNQNNNHMN 189
>gi|2655903|emb|CAA15653.1| (AL009171) 62D9.p [Drosophila melanogaster]
Length = 464
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 464
0 150 300 450
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.44, P = 0.36
Identities = 26/79 (32%), Positives = 37/79 (46%), Frame = +1
Query: 181 SMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQF 360
SM P+P+ + + NQ + P PNQ + PN QQ+L P+Q Q
Sbjct: 122 SMKGIKQQQHPSPNQQQPPSPNQQQHPSPNQQQHPSPNQQQHPNSNQ--QQHLSPNQQQG 179
Query: 361 QLIQNQAMNQPNVSK-PSNN 417
++ NQ N N S+ P NN
Sbjct: 180 KM-NNQNNNHMNQSQQPFNN 198
Score = 82 (28.9 bits), Expect = 9.2, P = 1.0
Identities = 26/88 (29%), Positives = 34/88 (38%), Frame = +1
Query: 178 FSMPPFHMPH--VPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQ 351
FS PP H V +P M+ Q + PP PNQ + P+ QQ+ P+Q
Sbjct: 103 FSSPPPGFKHNQVGSPKKKSMKGIKQQQHPSPNQQQPPSPNQQQHPSPNQ--QQHPSPNQ 160
Query: 352 MQFQLIQNQAMNQPNVSKPSNNGGPANPEN 441
Q Q PN + N N N
Sbjct: 161 QQHPNSNQQQHLSPNQQQGKMNNQNNNHMN 190
>gi|7300407|gb|AAF55565.1| (AE003722) fru gene product [Drosophila
melanogaster]
Length = 94
Frame -2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 94
0 20 40 60 80
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.48, P = 0.38
Identities = 14/37 (37%), Positives = 21/37 (56%), Frame = -2
Query: 117 IGKRH-YRSVHSHFHTHTHSNPHSHCWHVLLDSRKHHR 7
+G H + +HSH H H H + HSH + LD + H+
Sbjct: 32 VGHPHGHGHLHSHAHAHGHGHAHSH--YAALDLQTPHK 67
>gi|7715457|gb|AAF68044.1|AF252662_1 (AF252662) defective chorion 1 [Drosophila
simulans]
Length = 475
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 475
0 150 300 450
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.81, P = 0.55
Identities = 37/136 (27%), Positives = 56/136 (41%), Frame = +1
Query: 10 MMFPGIQQ--YMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPG-----SALPAATAAAAHL 168
M +P + Q +P+M +G +G + P MP +PG + +PA A A
Sbjct: 131 MNWPALPQDFQLPSMDLGPQVGSFLSQ---LPAMPAXXXMPGLLGAAAPVPAPAPAPAAA 187
Query: 169 GPRFSMPPFHMPHVPAPDSSRMQAANQSD-NNMVTSAGPPDPNQSR-----IPNFTDPYQ 330
P P P PAPD+++ Q+ N T P + + S +P F P
Sbjct: 188 PPXAPAPAADPPAAPAPDAAQPAILGQAALQNAFTFLNPSNFDASSLLGQSVPTFAPPNL 247
Query: 331 QYLGPHQMQFQLIQNQAMNQP 393
++ QMQ Q QP
Sbjct: 248 DFVA--QMQRQFFPGMTPAQP 266
>gi|82664|pir||A27863 Ac hypothetical protein ORFb - maize (fragment)
>gi|225635|prf||1308133B transposon Ac ORF b [Zea mays]
Length = 48
Frame -2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 48
0 20 40
Minus Strand HSPs:
Score = 69 (24.3 bits), Expect = 0.82, P = 0.56
Identities = 12/27 (44%), Positives = 16/27 (59%), Frame = -2
Query: 87 SHFHTHTHSNPHSHCWHVLLDSRKHHR 7
+H H H H+ H+H H L +KHHR
Sbjct: 19 NHNHNHNHNQNHNHS-HNLNPKKKHHR 44
>gi|82548|pir||S18236 omega secalin precursor (clone pSec2B) - rye
>gi|21204|emb|CAA42837.1| (X60295) Sec1 precursor [Secale cereale]
Length = 357
Frame 1 hits (HSPs): __________________
Annotated Domains: ___ __________________________________________
__________________________________________________
Database sequence: | | | | 357
0 150 300
__________________
Annotated Domains:
DOMO DM01413: GLIADIN 1..16
DOMO DM00406: GLIADIN 45..94
DOMO DM00406: GLIADIN 95..140
DOMO DM00406: GLIADIN 141..188
DOMO DM00406: GLIADIN 189..235
DOMO DM00406: GLIADIN 236..286
DOMO DM00406: GLIADIN 287..338
Entrez domain: signal sequence 1..19
__________________
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.94, P = 0.61
Identities = 32/118 (27%), Positives = 41/118 (34%), Frame = +1
Query: 91 NRPVMPFPNMLPGSALPAATAAAAHLGPR--FSMPPFHMPHVPAPDSSRMQAANQSDNNM 264
++P PFP PG +P + L P+ FS P P P P + Q
Sbjct: 186 SQPQQPFPQQ-PGQIIPQQPQQPSPLQPQQPFSQQP-QRPQQPFPQQPQQIIPQQPQQPF 243
Query: 265 VTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQNQAMNQPNVSKPSNNGG--PANPE 438
P P Q + P P Q Q F L Q +QP P G P P+
Sbjct: 244 PLQPQQPVPQQPQRPFGQQPEQIISQRPQQPFPLQPQQPFSQPQQPLPQQPGQIIPQQPQ 303
>gi|7298879|gb|AAF54085.1| (AE003674) bcd gene product [Drosophila
melanogaster]
Length = 67
Frame -2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 67
0 20 40 60
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.1, P = 0.65
Identities = 10/20 (50%), Positives = 13/20 (65%), Frame = -2
Query: 105 HYRSVHSHFHTHTHSNPHSH 46
H+ H+H H H HS+PH H
Sbjct: 12 HHPLPHTHTHPHPHSHPHPH 31
Score = 68 (23.9 bits), Expect = 1.1, P = 0.65
Identities = 13/34 (38%), Positives = 18/34 (52%), Frame = -2
Query: 105 HYRSVHSHFHTHTHSNPHSHCWHVLLDSRKHHRY 4
H+ H+H H H HS+PH H H HH++
Sbjct: 12 HHPLPHTHTHPHPHSHPHPHS-H----PHPHHQH 40
Score = 64 (22.5 bits), Expect = 3.0, P = 0.95
Identities = 9/15 (60%), Positives = 12/15 (80%), Frame = -2
Query: 90 HSHFHTHTHSNPHSH 46
H+H H H+H +PHSH
Sbjct: 19 HTHPHPHSHPHPHSH 33
>gi|156990|gb|AAA28385.1| (M14549) segmentation protein PRD 4 [Drosophila
melanogaster]
Length = 36
Frame -2 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.1, P = 0.65
Identities = 10/20 (50%), Positives = 13/20 (65%), Frame = -2
Query: 105 HYRSVHSHFHTHTHSNPHSH 46
H+ H+H H H HS+PH H
Sbjct: 1 HHPLPHTHTHPHPHSHPHPH 20
Score = 65 (22.9 bits), Expect = 2.3, P = 0.90
Identities = 10/18 (55%), Positives = 11/18 (61%), Frame = -2
Query: 90 HSHFHTHTHSNPHSHCWH 37
H H H H HS+PH H H
Sbjct: 12 HPHSHPHPHSHPHPHHQH 29
Score = 64 (22.5 bits), Expect = 3.0, P = 0.95
Identities = 9/15 (60%), Positives = 12/15 (80%), Frame = -2
Query: 90 HSHFHTHTHSNPHSH 46
H+H H H+H +PHSH
Sbjct: 8 HTHPHPHSHPHPHSH 22
>gi|349704|gb|AAA36373.1| (L23210) consitutive endothelial nitric oxide sythase
[Homo sapiens]
Length = 53
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | 53
0 20 40
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.1, P = 0.65
Identities = 16/41 (39%), Positives = 23/41 (56%), Frame = +1
Query: 28 QQYMPAMGMGVGMGMGMEMGMNRPVMPFP--NMLPGSALPAA 147
Q+ P G+G+G+G+G+ G P P P + P S LP A
Sbjct: 9 QEPGPPCGLGLGLGLGL-CGKQGPATPAPEPSRAPASLLPPA 49
>gi|82547|pir||S18235 omega secalin precursor (clone pSec1B) - rye
>gi|21202|emb|CAA42836.1| (X60294) Sec1 precursor [Secale cereale]
Length = 357
Frame 1 hits (HSPs): __________________
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | 357
0 150 300
__________________
Annotated Domains:
Entrez domain: signal sequence 1..19
__________________
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 1.2, P = 0.71
Identities = 32/118 (27%), Positives = 41/118 (34%), Frame = +1
Query: 91 NRPVMPFPNMLPGSALPAATAAAAHLGPR--FSMPPFHMPHVPAPDSSRMQAANQSDNNM 264
++P PFP PG +P + L P+ FS P P P P + Q
Sbjct: 186 SQPQQPFPQQ-PGQIIPQQPQQPSPLQPQQPFSQQP-QRPQQPFPQQPQQIIPQQPQQPF 243
Query: 265 VTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQNQAMNQPNVSKPSNNGG--PANPE 438
P P Q + P P Q Q F L Q +QP P G P P+
Sbjct: 244 PLQPQQPVPQQPQRPFGQQPEQIISQRPQQPFPLQPQQPFSQPQQPFPQQPGQIIPQQPQ 303
>gi|7293526|gb|AAF48900.1| (AE003510) CG7307 gene product [Drosophila
melanogaster]
Length = 1846
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 1846
0 500 1000 1500
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 1.4, Sum P(2) = 0.74
Identities = 34/117 (29%), Positives = 44/117 (37%), Frame = +1
Query: 55 GVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPRFSMPPFHMPHVPAPDSSRM 234
GVG G G+ + + PV+ P A+ A LG PP+ M
Sbjct: 1597 GVGPGPGLPVAVQPPVVGSVQNPQAQFQPVGVASLAPLGLA-QYPPYSFCQGLYAHHHNM 1655
Query: 235 QAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQNQAMNQPNVSK 405
M SAGPP P Q+ P QQ P Q Q Q++Q Q Q V +
Sbjct: 1656 SYP-PGQMQMFISAGPPPPPQAYGGYQQPPPQQPPNPQQQQ-QVVQQQVQQQQVVQQ 1710
Score = 49 (17.2 bits), Expect = 1.4, Sum P(2) = 0.74
Identities = 13/27 (48%), Positives = 14/27 (51%), Frame = +3
Query: 6 TYDVSWNPAVHASNGNGGWNGYGYGNG 86
T S NP + S GG NG G GNG
Sbjct: 1267 TVSGSQNPNGNPSGSGGGGNGGG-GNG 1292
Score = 47 (16.5 bits), Expect = 2.1, Sum P(2) = 0.88
Identities = 11/22 (50%), Positives = 12/22 (54%), Frame = +3
Query: 24 NPAVHASNGNGGW-NGYGYGNG 86
NP+ GNGG NG G G G
Sbjct: 1277 NPSGSGGGGNGGGGNGGGGGGG 1298
>gi|10727642|gb|AAF58648.2| (AE003826) CG13200 gene product [Drosophila
melanogaster]
Length = 66
Frame -1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | 66
0 20 40 60
Minus Strand HSPs:
Score = 67 (23.6 bits), Expect = 1.4, P = 0.75
Identities = 16/41 (39%), Positives = 23/41 (56%), Frame = -1
Query: 169 PNEQQLQ-LPLAKP-NQVTYWETALQVCSFPFPYPYPFQPPFP 47
P Q L +P +P + V Y LQ P+P+PYP+ P+P
Sbjct: 16 PRHQPLYYVPHGEPQDHVVY---PLQHYPLPYPHPYPYPHPYP 55
Score = 61 (21.5 bits), Expect = 6.6, P = 1.0
Identities = 13/42 (30%), Positives = 18/42 (42%), Frame = -1
Query: 169 PNEQQLQ-LPLAKPNQVTYWETALQVCSFPFPYPYPFQPPFP 47
P Q L +P +P + +P PYPYP P+P
Sbjct: 16 PRHQPLYYVPHGEPQDHVVYPLQHYPLPYPHPYPYPHPYPYP 57
Score = 60 (21.1 bits), Expect = 8.6, P = 1.0
Identities = 8/14 (57%), Positives = 12/14 (85%), Frame = -1
Query: 85 PFPYPYPFQPPFPL 44
P+PYP+P+ P+PL
Sbjct: 47 PYPYPHPYPYPYPL 60
>gi|8388723|emb|CAB94078.1| (AL358692) putative integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 83
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 1.4, P = 0.75
Identities = 12/20 (60%), Positives = 13/20 (65%), Frame = +1
Query: 160 AHLGPRFSMPPFHMPHVPAP 219
A L P F+MPPFH H P P
Sbjct: 25 APLSPGFAMPPFHPDHPPRP 44
>gi|7303238|gb|AAF58300.1| (AE003816) mam gene product [alt 1] [Drosophila
melanogaster]
Length = 1366
Frame 1 hits (HSPs): _____ __
__________________________________________________
Database sequence: | | | | 1366
0 500 1000
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 2.1, Sum P(2) = 0.87
Identities = 39/122 (31%), Positives = 55/122 (45%), Frame = +1
Query: 19 PGIQQYMPAMGMGVGMGMGMEMGM-NRPVMPFPNMLPGSALPAATAAAAHLGPRFSMPPF 195
P +QQ P +G+GVG+G+G+ +G+ N V+ P GS P A GP MP
Sbjct: 856 PLMQQ--PQVGVGVGVGVGVGVGVGNGGVVGGP----GSGGPNNGAMNQMGGPMGGMPGM 909
Query: 196 HMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQN 375
M P AA + M+ +G P Q +P P Q GP+ Q + +Q
Sbjct: 910 QMGGPMNPMQMNPNAAGPTAQQMMMGSGAGGPGQ--VPG---PGQ---GPNPNQAKFLQQ 961
Query: 376 QAM 384
Q M
Sbjct: 962 QQM 964
Score = 37 (13.0 bits), Expect = 2.1, Sum P(2) = 0.87
Identities = 9/28 (32%), Positives = 11/28 (39%), Frame = +1
Query: 370 QNQAMNQPNVSKPSNNGGPANPENH*SG 453
Q Q M Q GGP + N+ G
Sbjct: 1268 QQQQMMQMGPGGGGGGGGPGSANNNNGG 1295
>gi|2854113|gb|AAC02553.1| (AF045940) nitric oxide synthase [Mus musculus]
>gi|4558464|gb|AAD22613.1|AF091262_1 (AF091262) endothelial nitric
oxide synthase [Mus musculus]
Length = 54
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | 54
0 20 40
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 2.3, P = 0.90
Identities = 15/44 (34%), Positives = 22/44 (50%), Frame = +1
Query: 28 QQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAA 159
Q+ P G+G+G+G+G+ G P P P A P+ T A
Sbjct: 9 QEPGPPCGLGLGLGLGL-CGKQGPASPAPEPSQAPAPPSPTRPA 51
>gi|10727422|gb|AAF51527.2| (AE003590) CG3660 gene product [Drosophila
melanogaster]
Length = 2703
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 2703
0 500 1000 1500 2000 2500
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 2.6, P = 0.93
Identities = 37/146 (25%), Positives = 54/146 (36%), Frame = +1
Query: 22 GIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPRFSMPPFHM 201
G + AMG+GVG+G+G MG P++ PG A A G + PP
Sbjct: 67 GAADHQAAMGLGVGVGVGAGMGDLSGWGAAPSV-PGQAAAYPGAGLGAYGHPQAAPPSQQ 125
Query: 202 PHVPAPDSSR--MQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGP----HQMQFQ 363
+ R M A Q D + S G + + QQ P Q Q Q
Sbjct: 126 QRQSNASAYRQHMPAYGQQDQQKLASYGAQQSMMAGYGSLAPQQQQQQQPPTPQQQQQAQ 185
Query: 364 LIQNQAMNQPNVSKPSNNGGPANPENH 444
+Q QA Q + + P+++
Sbjct: 186 QVQQQAQQQQQQQQQQSQQQARLPQHY 212
>gi|7303237|gb|AAF58299.1| (AE003816) mam gene product [alt 2] [Drosophila
melanogaster]
Length = 1594
Frame 1 hits (HSPs): _____ __
__________________________________________________
Database sequence: | | | | | 1594
0 500 1000 1500
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 39/122 (31%), Positives = 55/122 (45%), Frame = +1
Query: 19 PGIQQYMPAMGMGVGMGMGMEMGM-NRPVMPFPNMLPGSALPAATAAAAHLGPRFSMPPF 195
P +QQ P +G+GVG+G+G+ +G+ N V+ P GS P A GP MP
Sbjct: 1084 PLMQQ--PQVGVGVGVGVGVGVGVGNGGVVGGP----GSGGPNNGAMNQMGGPMGGMPGM 1137
Query: 196 HMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQN 375
M P AA + M+ +G P Q +P P Q GP+ Q + +Q
Sbjct: 1138 QMGGPMNPMQMNPNAAGPTAQQMMMGSGAGGPGQ--VPG---PGQ---GPNPNQAKFLQQ 1189
Query: 376 QAM 384
Q M
Sbjct: 1190 QQM 1192
Score = 37 (13.0 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 9/28 (32%), Positives = 11/28 (39%), Frame = +1
Query: 370 QNQAMNQPNVSKPSNNGGPANPENH*SG 453
Q Q M Q GGP + N+ G
Sbjct: 1496 QQQQMMQMGPGGGGGGGGPGSANNNNGG 1523
>gi|126721|sp|P21519|MAM_DROME NEUROGENIC PROTEIN MASTERMIND
>gi|103241|pir||A33106 neurogenic locus mam protein - fruit fly
(Drosophila melanogaster) >gi|8204|emb|CAA38152.1| (X54251) nuclear
protein [Drosophila melanogaster]
Length = 1596
Frame 1 hits (HSPs): _____ __
Annotated Domains: _______________________________________________ __
__________________________________________________
Database sequence: | | | | | 1596
0 500 1000 1500
__________________
Annotated Domains:
Entrez Domain: GLN-RICH. 20..84
Entrez Domain: ARG/LYS-RICH (BASIC). 127..190
Entrez Domain: GLN-RICH. 196..219
Entrez Domain: ASN-RICH. 259..304
Entrez Domain: GLY/ASN-RICH. 355..388
Entrez Domain: GLN-RICH. 392..406
Entrez Domain: GLY-RICH. 407..440
Entrez Domain: GLN-RICH. 651..671
Entrez Domain: GLN-RICH. 700..714
Entrez Domain: GLN-RICH. 759..816
Entrez Domain: 5 X 2 AA TANDEM REPEATS OF G-V. 987..996
Entrez Domain: ALA-RICH. 1060..1079
Entrez Domain: 8 X 2 AA TANDEM REPEATS OF V-G. 1092..1107
Entrez Domain: 7 X 2 AA TANDEM REPEATS OF G-V. 1237..1252
Entrez Domain: POLY-THR. 1492..1496
Entrez Domain: ASP/GLU-RICH (ACIDIC). 1559..1592
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 21..83
PRODOM PD028194: MAM(1) Q24754(1) 120..192
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 194..233
PRODOM PD026430: MAM_DROME 235..257
PRODOM PD026647: MAM(1) Q24754(1) 307..353
PRODOM PD032089: MAM(1) Q24754(1) 441..554
PRODOM PD080452: MAM_DROME 570..590
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 625..815
PRODOM PD051762: MAM_DROME 817..888
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 890..1061
PRODOM PD044896: MAM_DROME 1145..1166
PRODOM PD025980: MAM_DROME 1205..1231
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 1270..1501
PRODOM PD026618: MAM(1) Q24754(1) 1548..1591
__________________
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 39/122 (31%), Positives = 55/122 (45%), Frame = +1
Query: 19 PGIQQYMPAMGMGVGMGMGMEMGM-NRPVMPFPNMLPGSALPAATAAAAHLGPRFSMPPF 195
P +QQ P +G+GVG+G+G+ +G+ N V+ P GS P A GP MP
Sbjct: 1085 PLMQQ--PQVGVGVGVGVGVGVGVGNGGVVGGP----GSGGPNNGAMNQMGGPMGGMPGM 1138
Query: 196 HMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQN 375
M P AA + M+ +G P Q +P P Q GP+ Q + +Q
Sbjct: 1139 QMGGPMNPMQMNPNAAGPTAQQMMMGSGAGGPGQ--VPG---PGQ---GPNPNQAKFLQQ 1190
Query: 376 QAM 384
Q M
Sbjct: 1191 QQM 1193
Score = 37 (13.0 bits), Expect = 2.8, Sum P(2) = 0.94
Identities = 9/28 (32%), Positives = 11/28 (39%), Frame = +1
Query: 370 QNQAMNQPNVSKPSNNGGPANPENH*SG 453
Q Q M Q GGP + N+ G
Sbjct: 1498 QQQQMMQMGPGGGGGGGGPGSANNNNGG 1525
>gi|3914255|sp|Q49378|P32_MYCGA P32 ADHESIN (CYTADHESIN P32)
>gi|7481987|pir||T18345 MGC2 protein precursor - Mycoplasma
gallisepticum >gi|1022702|gb|AAB02986.1| (U34842) MGC2 precursor
[Mycoplasma gallisepticum]
Length = 304
Frame 1 hits (HSPs): _______________________
Annotated Domains: _________________ ________
__________________________________________________
Database sequence: | | | | | | || 304
0 50 100 150 200 250 300
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 11..31
Entrez Transmembrane region: POTENTIAL. 66..86
Entrez Domain: 2 X 22 AA REPEAT. 182..224
Entrez Repetitive region: 1. 182..203
Entrez Repetitive region: 2. 204..224
PRODOM PD020976: P32(2) P30(1) 4..100
PRODOM PD209144: P32_MYCGA 183..202
__________________
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 2.9, P = 0.95
Identities = 46/145 (31%), Positives = 60/145 (41%), Frame = +1
Query: 7 PMMFPGIQQYMPAMGMGVGMG---MGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPR 177
P P QQ + G G M MGM G N+ MP P M G P + P
Sbjct: 166 PQFGPNPQQRINPQGFGGPMPPNQMGMRPGFNQ--MP-PQM--GGMPPNQMG----MRPG 216
Query: 178 FS-MPPFHMPHVPAPD-SSRMQAANQSDNNMVTSAGPPDPNQSR-IPNFTDPYQQYLGPH 348
F+ MPP P P+ ++M NQ G P ++ + F P +GP+
Sbjct: 217 FNQMPPQMGGMPPRPNFPNQMPNMNQPRPGFRPQPGGGVPMGNKAVGGFNHPGAP-MGPN 275
Query: 349 QMQFQLIQNQAMNQPNVSKPSNNGGPANPEN 441
+M F NQ MNQP G P P+N
Sbjct: 276 RMNFP---NQGMNQPPYMAGPRAGFP--PQN 301
>gi|1944457|dbj|BAA19687.1| (D89901) high-glycine tyrosine keratin type II.3
[Mus musculus]
Length = 54
Frame 3 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 54
0 20 40
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 3.0, P = 0.95
Identities = 14/37 (37%), Positives = 18/37 (48%), Frame = +3
Query: 57 GWNGYGYGNGNEQTCNAVSQYVTWFGFASGNCS--CC 161
G+ G GYG G+ C Y + G+ G CS CC
Sbjct: 11 GYGGLGYGYGSGYGCGYGCGYGGYGGYGYGCCSPLCC 47
>gi|7107359|gb|AAF36387.1|AF220656_1 (AF220656) apoptosis-associated nuclear
protein PHLDA1 [Homo sapiens]
Length = 52
Frame -2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 52
0 20 40
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 3.0, P = 0.95
Identities = 10/19 (52%), Positives = 12/19 (63%), Frame = -2
Query: 102 YRSVHSHFHTHTHSNPHSH 46
Y H H H+H HS+PH H
Sbjct: 2 YPHPHPHPHSHPHSHPHPH 20
Score = 62 (21.8 bits), Expect = 5.1, P = 0.99
Identities = 9/15 (60%), Positives = 11/15 (73%), Frame = -2
Query: 90 HSHFHTHTHSNPHSH 46
HSH H+H H +PH H
Sbjct: 10 HSHPHSHPHPHPHPH 24
>gi|2736433|gb|AAB94212.1| (AF039046) R09B5.3 gene product [Caenorhabditis
elegans]
Length = 72
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 3.0, P = 0.95
Identities = 17/29 (58%), Positives = 19/29 (65%), Frame = +1
Query: 16 FPGIQQ-Y-MPAMGMGVGMGMGMEMGMNRP 99
+PG+ Y M GMG GMGMG MGM RP
Sbjct: 35 YPGMMGGYGMRPYGMGYGMGMG-GMGMYRP 63
>gi|7323803|gb|AAF59566.1| (AC024817) Hypothetical protein Y54G2A.f
[Caenorhabditis elegans]
Length = 56
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | 56
0 20 40
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 3.0, P = 0.95
Identities = 12/37 (32%), Positives = 20/37 (54%), Frame = +1
Query: 307 PNFTDPYQQYLGPHQMQFQLIQNQAMNQPNVSKPSNN 417
PNF PY + PH+ + + I N Q + S P+++
Sbjct: 19 PNFAQPYGMGMRPHEEETRQIMNLDSQQTHSSSPTSS 55
>gi|433546|emb|CAA53817.1| (X76232) fc proteins [Drosophila erecta]
Length = 389
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 389
0 150 300
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 4.3, P = 0.99
Identities = 32/123 (26%), Positives = 50/123 (40%), Frame = +1
Query: 10 MMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPA-ATAAAAHLGPRFSM 186
M +P + Q M +G +G + P+ P++L G+A P A A A P
Sbjct: 139 MNWPALPQDFQLPSMDLGPQVGSFLAQLPPMPAIPSIL-GAAAPVPAPAPAPAATPLAPA 197
Query: 187 PPFHMPHVPAPDSSRMQAANQSD-NNMVTSAGPPDPNQSRI-----PNFTDPYQQYLGPH 348
P P P PD+++ Q+ N T P + + S + P F P ++
Sbjct: 198 PAADPPAAPVPDAAQPAILGQAALQNAFTFLNPSNFDASGLLGQSAPTFAPPNFDFVAQM 257
Query: 349 QMQF 360
Q QF
Sbjct: 258 QRQF 261
>gi|7299821|gb|AAF54999.1| (AE003702) ems gene product [Drosophila
melanogaster]
Length = 494
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 494
0 150 300 450
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 4.4, P = 0.99
Identities = 37/115 (32%), Positives = 48/115 (41%), Frame = +1
Query: 10 MMFPGIQQYMPAMGMG-VGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPRFSM 186
MM PG M GM G+ MG P P P PG LP A ++ +
Sbjct: 247 MMHPGGAGPMMMPGMPPAGLVRPFPMGPGGP--PMPQGQPG--LPDIKALPPYINAPPEL 302
Query: 187 PPFHMPHVPAPDSSRMQAANQSDNNM------VTSAGPPDPNQSRIPN---FTDPYQQY 336
PP H PH+ A +M AA Q+ + + +AG P +PN D YQ Y
Sbjct: 303 PPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLY 361
>gi|399911|sp|P18488|HMES_DROME EMPTY SPIRACLES HOMEOTIC PROTEIN
>gi|283663|pir||S22708 homeotic protein ems - fruit fly (Drosophila
melanogaster) >gi|8820|emb|CAA46985.1| (X66270) ems W13 [Drosophila
melanogaster]
Length = 497
Frame 1 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 497
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00027: 'Homeobox' domain proteins. 406..448
DOMO DM00009: HOMEOBOX 385..450
Entrez Domain: PRO-RICH. 1..387
Entrez Domain: GLN-RICH. 99..362
Entrez Domain: POLY-ALA. 334..341
Entrez dna-binding site: HOMEOBOX. 391..450
Entrez Domain: ASP/GLU-RICH (ACIDIC). 471..497
PFAM homeobox: Homeobox domain 392..448
PRODOM PD105154: HMES_DROME 1..79
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 81..265
PRODOM PD073259: HMES_DROME 267..390
PRODOM PD000010: HMP1(10) PAX6(7) DLX3(6) 392..448
PRODOM PD050171: HMES_DROME 450..496
PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 424..447
__________________
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 4.5, P = 0.99
Identities = 37/115 (32%), Positives = 48/115 (41%), Frame = +1
Query: 10 MMFPGIQQYMPAMGMG-VGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPRFSM 186
MM PG M GM G+ MG P P P PG LP A ++ +
Sbjct: 250 MMHPGGAGPMMMPGMPPAGLVRPFPMGPGGP--PMPQGQPG--LPDIKALPPYINAPPEL 305
Query: 187 PPFHMPHVPAPDSSRMQAANQSDNNM------VTSAGPPDPNQSRIPN---FTDPYQQY 336
PP H PH+ A +M AA Q+ + + +AG P +PN D YQ Y
Sbjct: 306 PPQHNPHLIAAAQFQMAAALQAGHVLGPAAAAAAAAGLPPHAAQFMPNPGMARDSYQLY 364
>gi|7230509|gb|AAF43004.1|AF215703_1 (AF215703) KISMET-L long isoform
[Drosophila melanogaster]
Length = 5322
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 5322
0 1000 2000 3000 4000 5000
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 5.2, P = 0.99
Identities = 37/146 (25%), Positives = 54/146 (36%), Frame = +1
Query: 22 GIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPRFSMPPFHM 201
G + AMG+GVG+G+G MG P++ PG A A G + PP
Sbjct: 74 GAADHQAAMGLGVGVGVGAGMGDLSGWGAAPSV-PGQAAAYPGAGLGAYGHPQAAPPSQQ 132
Query: 202 PHVPAPDSSR--MQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGP----HQMQFQ 363
+ R M A Q D + S G + + QQ P Q Q Q
Sbjct: 133 QRQSNASAYRQHMPAYGQQDQQKLASYGAQQSMMAGYGSLAPQQQQQQQPPTPQQQQQAQ 192
Query: 364 LIQNQAMNQPNVSKPSNNGGPANPENH 444
+Q QA Q + + P+++
Sbjct: 193 QVQQQAQQQQQQQQQQSQQQARLPQHY 219
>gi|4508017 ref|NP_003448.1| zinc finger protein 207 [Homo sapiens]
>gi|11426532 ref|XP_008462.1| zinc finger protein 207 [Homo
sapiens] >gi|6137311|sp|O43670|Z207_HUMAN ZINC FINGER PROTEIN 207
>gi|2895870|gb|AAC78561.1| (AF046001) zinc finger transcription
factor [Homo sapiens]
Length = 478
Frame 1 hits (HSPs): ____________ _______
__________________________________________________
Database sequence: | | | | | 478
0 150 300 450
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 35/112 (31%), Positives = 45/112 (40%), Frame = +1
Query: 4 VPMMFPGIQQYMPAMGMGVGMGMG--MEMGMN-RPVMP-----FPNMLPGSALPAATAAA 159
VP + PG+ MP M G+ M MG M G P+MP P +P +P T A
Sbjct: 167 VPPLMPGMPPVMPGMPPGM-MPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQ 225
Query: 160 AHLGPRF-SMPPFHMPHVPAPDSSRMQAANQSDNNM---VTSAGPPDPNQSRI 306
A P + PP VPAP + S M VTS+ N +
Sbjct: 226 AVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESL 278
Score = 79 (27.8 bits), Expect = 7.0, Sum P(2) = 1.0
Identities = 29/80 (36%), Positives = 36/80 (45%), Frame = +1
Query: 4 VPMMFPGIQQYMPAMGMGVGMGMG--MEMGMN-RPVMP-----FPNMLPGSALPAATAAA 159
VP + PG+ MP M G+ M MG M G P+MP P +P +P T A
Sbjct: 167 VPPLMPGMPPVMPGMPPGM-MPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQAQ 225
Query: 160 AHLGPRF-SMPPFHMPHVPAP 219
A P + PP VPAP
Sbjct: 226 AVSAPGILNRPPAPTATVPAP 246
Score = 40 (14.1 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 18/54 (33%), Positives = 21/54 (38%), Frame = +1
Query: 280 PPDPNQSRIPNFTDPYQQYLGPHQ-MQFQL---IQNQAMNQPNVSKPSNNGGPANP 435
P P Q + P+ QY G HQ M L + P V P GGP P
Sbjct: 410 PGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMV--PPYQGGPPRP 463
>gi|4996367|dbj|BAA78426.1| (AB021266) polyprotein [Arabidopsis thaliana]
Length = 1475
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 1475
0 500 1000
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 5.4, P = 1.0
Identities = 29/112 (25%), Positives = 46/112 (41%), Frame = +1
Query: 97 PVMPFPNMLPGSALPAATAAAAHLGPRFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSA 276
P P LP + P A LGP P P +P+P + +++ ++ ++S
Sbjct: 768 PNWPSHTTLPTT--PLVLPAPPCLGPHLDTSP-RPPSLPSPLCTTQVSSSNLPSSSISS- 823
Query: 277 GPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQNQAMNQPNVSKPSNNGGPAN 432
P ++ P+ P Q PHQ Q + +N PN + PS N N
Sbjct: 824 --PSSSEPTAPSHNGP-QPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQN 872
WARNING: HSPs involving 21 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.339 0.145 0.538
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.347 0.150 0.554
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.343 0.150 0.509
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.335 0.150 0.504
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.352 0.151 0.606
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.346 0.161 0.632
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 169 168 10. 75 3 12 22 0.11 34
31 0.11 37
+2 0 170 169 10. 75 3 12 22 0.11 34
31 0.11 37
+1 0 170 169 10. 75 3 12 22 0.11 34
31 0.11 37
-1 0 170 169 10. 75 3 12 22 0.11 34
31 0.11 37
-2 0 170 169 10. 75 3 12 22 0.11 34
31 0.11 37
-3 0 169 169 10. 75 3 12 22 0.11 34
31 0.11 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 71
No. of states in DFA: 597 (59 KB)
Total size of DFA: 240 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 210.70u 1.15s 211.85t Elapsed: 00:00:36
Total cpu time: 210.77u 1.20s 211.97t Elapsed: 00:00:36
Start: Wed Feb 6 14:05:04 2002 End: Wed Feb 6 14:05:40 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000