13 hits
112 letters
ath 
69 At5g50410 (259)
hsa 
65 Hs7661814 (154)
sce 
64 _ YCR002c (322) KOG1547
cel 
63 CE23848 (308)
dme 
63 _ 7295779 (486) KOG0490
spo 
61 _ SPAC821.06 (331) KOG1547
dme 60 _ 7300634 (419) KOG3859
dme 60 _ 7293264 (427) KOG2655
hsa 59 Hs10337615 (711)
hsa 58 _ Hs5729718 (420) KOG0619
hsa 57 Hs7662336 (977)
hsa 57 _ Hs4758942 (478) KOG2655
hsa 57 _ Hs17986247 (459) KOG2655
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= YPO0998_2
(112 letters)
Database: kyva
112,920 sequences; 47,500,486 total letters
Score E
Sequences producing significant alignments: (bits) Value
At5g50410 31 0.37
Hs7661814 30 1.1
YCR002c 29 1.4
CE23848 29 1.8
7295779 29 1.8
SPAC821.06 28 3.1
7300634 28 4.1
7293264 28 4.1
Hs10337615 27 5.3
Hs5729718 27 7.0
Hs7662336 27 9.1
Hs4758942 27 9.1
Hs17986247 27 9.1
# >At5g50410
# Length = 259
#
# Score = 31.2 bits (69), Expect = 0.37
# Identities = 14/35 (40%), Positives = 19/35 (54%)
#
# Query: 15 WETDAELQVTYLSPRFLIISGWSVDHWLGLNLDSL 49
# WET A V+ ++S V+ W+G NLDSL
# Sbjct: 38 WETMARAWVSAFPDAKAVVSAGEVETWIGTNLDSL 72
#
#
# >Hs7661814
# Length = 154
#
# Score = 29.6 bits (65), Expect = 1.1
# Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
#
# Query: 33 ISGWSVDHWLGLNLDSLLNCDITSLRTWLQHTHLTDSRNELQCTY------FSAKGSKRV 86
# +S W+ +HWL SL C + SL Q + L D+R+ CT+ S S V
# Sbjct: 22 MSSWNQNHWL-----SLAACFLLSLHMRSQPSILLDARS--NCTHGKSELPLSLSLSLVV 74
#
# Query: 87 CRIHAKPII 95
# RIH P +
# Sbjct: 75 IRIHQNPCL 83
#
#
# >YCR002c
# Length = 322
#
# Score = 29.3 bits (64), Expect = 1.4
# Identities = 11/28 (39%), Positives = 16/28 (56%)
#
# Query: 41 WLGLNLDSLLNCDITSLRTWLQHTHLTD 68
# W +N++ + CD LR +L THL D
# Sbjct: 255 WSAINVEDINQCDFVYLREFLIRTHLQD 282
#
#
# >CE23848
# Length = 308
#
# Score = 28.9 bits (63), Expect = 1.8
# Identities = 12/28 (42%), Positives = 18/28 (63%)
#
# Query: 44 LNLDSLLNCDITSLRTWLQHTHLTDSRN 71
# L+LDSL++CDITSL ++ + N
# Sbjct: 162 LDLDSLMSCDITSLDAYIHDDSIASPSN 189
#
#
# >7295779
# Length = 486
#
# Score = 28.9 bits (63), Expect = 1.8
# Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 1/36 (2%)
#
# Query: 9 SASDWLWETDAELQVTYLSPRFLIISGWSVDHWLGL 44
# +ASD W L V+ +S +IISGWS W G+
# Sbjct: 419 NASDRYWAPSG-LHVSAISMMTVIISGWSATKWGGI 453
#
#
# >SPAC821.06
# Length = 331
#
# Score = 28.1 bits (61), Expect = 3.1
# Identities = 14/46 (30%), Positives = 24/46 (51%), Gaps = 4/46 (8%)
#
# Query: 27 SPRFLIISGWSV----DHWLGLNLDSLLNCDITSLRTWLQHTHLTD 68
# S + +I+ G + + W +N+D +C+ LR +L THL D
# Sbjct: 236 SEKAIIVDGRPIRGRQNRWGVVNVDDENHCEFVFLRNFLMRTHLQD 281
#
#
# >7300634
# Length = 419
#
# Score = 27.7 bits (60), Expect = 4.1
# Identities = 13/66 (19%), Positives = 30/66 (44%)
#
# Query: 41 WLGLNLDSLLNCDITSLRTWLQHTHLTDSRNELQCTYFSAKGSKRVCRIHAKPIIQQGEI 100
# W + +++ +CD LR L T++ D R + ++ KR+ ++ + +
# Sbjct: 259 WGTVQVENETHCDFVKLREMLIRTNMEDMREKTHTRHYELYRQKRLEQMGFSDVDSDNKP 318
#
# Query: 101 VGFRGT 106
# + F+ T
# Sbjct: 319 ISFQQT 324
#
#
# >7293264
# Length = 427
#
# Score = 27.7 bits (60), Expect = 4.1
# Identities = 13/60 (21%), Positives = 32/60 (52%)
#
# Query: 41 WLGLNLDSLLNCDITSLRTWLQHTHLTDSRNELQCTYFSAKGSKRVCRIHAKPIIQQGEI 100
# W +N++ + D LRT+L TH+ D ++ Q ++ ++ + +I + ++G++
# Sbjct: 308 WGVVNVEDPEHSDFIKLRTFLISTHMQDLKDTTQDVHYENFRAQCISQISQHALRERGKL 367
#
#
# >Hs10337615
# Length = 711
#
# Score = 27.3 bits (59), Expect = 5.3
# Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
#
# Query: 57 LRTWLQHTHLTDSRNELQCTYFSAKGSKRVCRIHAKPIIQQGEIVGFRGT 106
# L W QH+ T R +C F K R C I+ G VG+RGT
# Sbjct: 80 LLPWTQHSPHTRLRRSGRCDLFQKKDYVRTC------IMNNG--VGYRGT 121
#
#
# >Hs5729718
# Length = 420
#
# Score = 26.9 bits (58), Expect = 7.0
# Identities = 8/27 (29%), Positives = 15/27 (54%)
#
# Query: 51 NCDITSLRTWLQHTHLTDSRNELQCTY 77
# +C + + TWL+ T + ++ L C Y
# Sbjct: 299 DCHMADMVTWLKETEVVQGKDRLTCAY 325
#
#
# >Hs7662336
# Length = 977
#
# Score = 26.6 bits (57), Expect = 9.1
# Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
#
# Query: 52 CDITSLRTWLQHTHLTDSRNELQCT---YFSAKGSKRVCRIHAKPIIQQGEI 100
# C+I L++WL+ T ++ C +F K + + + P++ E+
# Sbjct: 238 CEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIRKTELCPLLSDSEV 289
#
#
# >Hs4758942
# Length = 478
#
# Score = 26.6 bits (57), Expect = 9.1
# Identities = 11/38 (28%), Positives = 22/38 (56%)
#
# Query: 41 WLGLNLDSLLNCDITSLRTWLQHTHLTDSRNELQCTYF 78
# W + +++ +CD LRT L TH+ D ++ + T++
# Sbjct: 367 WGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHY 404
#
#
# >Hs17986247
# Length = 459
#
# Score = 26.6 bits (57), Expect = 9.1
# Identities = 11/38 (28%), Positives = 22/38 (56%)
#
# Query: 41 WLGLNLDSLLNCDITSLRTWLQHTHLTDSRNELQCTYF 78
# W + +++ +CD LRT L TH+ D ++ + T++
# Sbjct: 348 WGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHY 385
#
#
Database: kyva
Posted date: Nov 11, 2002 5:09 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Lambda K H
0.322 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,695,094
Number of Sequences: 112920
Number of extensions: 382196
Number of successful extensions: 782
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 13
length of query: 112
length of database: 47,500,486
effective HSP length: 88
effective length of query: 24
effective length of database: 37,563,526
effective search space: 901524624
effective search space used: 901524624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)