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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs8035648          
refSNP ID: rs8035648
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_152334.2:c.1321-5812C>T
NT_035325.6:g.3681928G>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss12331157 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs8035648 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss12331157WI_SSAHASNP|chr15.NT_035325.4_3673814fwd/TA/Ggaccatggtaagcactgtttaattctctgttatgtacctgagctctctcctttttttaga07/04/0310/10/03116Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs8035648|allelePos=1045|totalLen=1454|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=116
 TTTTTCACAT TAATATTTGT TACCAGATTA GTAGCAATTT AAACTTTCTC TCTAAGTATA
 TGATAACTGT TTCCTCACAT TTCCTTCAGC AATGAAAATT ATTTAATGGG TATCAATCtt
 tttttttgaa atggagtctc gctctgtcac acaggctgga gtgaagtggc gtgatctcag
 ctcactgcaa gcttcgtctc ctgggttcac accattctcc tgcctcagcc tcccgagtag
 ctgggactac aggcgcccac caccacgcct ggctaatttt tttgcatttt tagtagagat
 ggggtttcac cgtattagcc aggatggtct tgatctcctg acctcatgat ccacccgcct
 cagcctccca aagtgctggg attacaggca tgagccactg cgcccggccA ATGGGTATCA
 GTCTTAGAAC TATTACCTCA Gtatttatat atatatatat atatttttga aacagagtgt
 tgctctcttg cccaggctgg agtgcagtgg cacaatcttg gctcactgca gcctctacct
 cctgggttca agcaattctc ctgcctcagc ctcccaagta gctgagatca caaatgtgca
 ccactacgcc tggctaattt ttgtattttt agtagacaca gggtttcacc atgttggcca
 ggctggtctc gaactcctgg cttcaagcga tccacccctc tcagcctccc aaagtgctgg
 gattacaaga gtgagtcact atgcccagcc ttttaaattt tcttcaataa attttatttC
 ACATATTTGA GATTCACAAC ATGATGTTAT AGGACACAAA TAGTAAAAGa gttacctttt
 ttgtgtgtgt gacaagagca gttaaaatct aattacttaa caaaactccc tgataaatat
 aattttgtta actttagtcc tcatgttctg tattagatct ctggccttgt tgatcctaga
 tatctatttt gtatcctttg atctatatcc ccccatttct tccccccaac ccctgaccat
 ggtaagcact gtttaattct ctgt
 R
 tatgtacctg agctctctcc tttttttaga ttcatcagct cccctggttc tcaggcctct
 gcactcaggc gagaattaca tctccaactt tcttggaccc tcagatcatg ggatttcttg
 gcctccataa tcacacaagc caattcctca taataaatct cttcttttct atgtatcttg
 ttggttctgt ttctgtggag aatcctgacA TGCCAATATA CTTTCCATAT GGTTTCTGAT
 TGGGTCTGAC CAATGGGAAG TTCCAAAGGA TTCACAGGGT AGTGGAAGAG AGAGGTCTGG
 ATATTTCTTT CCCTGGTTCT CCCTGCTGTG GGTTTACTCA GGTTCTGGCT GTGTTCCACA
 GTTACAGCTT CTGTTGTGTG GCCTCTCCTC CACGGCTCCA AGCTCTCTG

  GeneView back to top
GeneView via analysis of contig annotation: TARSL2 threonyl-tRNA synthetase-like 2
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_035325->NM_152334
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_035325->NM_152334->NP_6895473681928reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs8035648 maps exactly once on NCBI human chromosome 15
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
15NW_001838224.216284578355862minusCalt_assembly_8HuRefHuRefview1044
15NW_925940.11713852278645702plusGalt_assembly_1CeleraCeleraview1044
15NT_035325.63681928100049600plusGref_assemblyreferencereferenceview1044

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_035325
dbSNP Blast Analysis

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceG/G
HWPG
ss12331157HapMap-CEUEuropean 120IG 1.000 1.000
HapMap-HCBAsian 90IG 1.000 1.000
HapMap-JPTAsian 90IG 1.000 1.000

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
18015000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
withHapMapFreqUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .