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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs12278682          
refSNP ID: rs12278682
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss18694240 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs12278682 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss18694240SC_SNP|SC-CHR9-12_NA17119-200402.chr11.NT_033903.6_1553336fwd/TA/Gaaaaggctttgtgcctgccttcagcagaacgatcctgaagatcgctgcaaaaatgaaaag02/20/0403/04/04120Genomicunknown
ss75238336ILLUMINA|ILMN_Human_1M_rs12278682fwd/TA/Gaaaaggctttgtgcctgccttcagcagaacgatcctgaagatcgctgcaaaaatgaaaag08/28/0708/29/07129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs12278682|allelePos=201|totalLen=401|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=129
 TGTGTTCCGT AGGCTATAGA TCAATGGGTT CAGCATTGGG CTCAAAAAAG TATAAAAGAC
 TGCAGTTATT TTGGACTCCT CTACAGACTT CTCTGATGGA GGCCTTACGT ACATGCAGAA
 GAGGGTTCCA TAAAACAAAG TGACTATTGT CAGGTGGGAA GCACACGTAG AAAAGGCTTT
 GTGCCTGCCT TCAGCAGAAC
 R
 GATCCTGAAG ATCGCTGCAA AAATGAAAAG ATAGGACAGA AGAATGATGA AGAGAGAGCT
 TGAGAGATTA AAGCCTGCAA CTACAAACAT TGCCATCTTT TTGACACGGG TGTCAGAGCA
 GGCCAGCATG ATAAGAGGAG GATCAGCGCA GTAGAAATGA TTGATTTCAA GGGAGCCACA
 GAAGGATAAG TGAAAGGTTA

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  See all two hits of rs12278682 on the  NCBI human genome map
!WARNING: Several map positions found! The map position is found by blasting with the contig sequences.
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
11NW_001838023.1206561252681753plusGalt_assembly_8HuRefHuRefview200
11NW_001838023.1210154752717688plusGalt_assembly_8HuRefHuRefview200
11NW_925106.1204026253692186plusGalt_assembly_1CeleraCeleraview200
11NW_925106.1207604653727970plusGalt_assembly_1CeleraCeleraview200
11NT_033903.7165030856101089plusGref_assemblyreferencereferenceview200
11NT_033903.7168608956136870plusGref_assemblyreferencereferenceview200

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_033903
dbSNP Blast Analysis
NCBI RefSeq NM (mRNA):GenBank HTGS Finished:
NM_001004740.1 NM_001004741.1 AP002517.3
UniGene Cluster ID
553751

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .