Reference SNP(refSNP) Cluster Report: rs2015834

Reference SNP(refSNP) Cluster Report: rs2015834

refSNP ID: rs2015834
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	92/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_080744.1:c.1411+616G>A
NT_007933.14:g.1254941C>T

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss2893846 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2015834 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss2893846	TSC-CSHL\|TSC0080596	fwd/T	A/G	acctccacctcccaggttcaagcgattctc	tgcctcagcctccccagtaagtgggattat	01/03/01	10/10/03	92	Genomic	unknown
ss5942493	SC_JCM\|NT_007933.10_1254941	rev/B	C/T	ataatcccacttactggggaggctgaggca	gagaatcgcttgaacctgggaggtggaggt	01/10/03	10/10/03	111	Genomic	unknown
ss93708594	BCMHGSC_JDW\|JWB-2329157	rev/B	C/T	ataatcccacttactggggaggctgaggca	gagaatcgcttgaacctgggaggtggaggt	02/26/08	03/05/08	129	Genomic	unknown

Fasta sequence (Legend)

 TGTCCTGAGC AGAGCAATGA AAAAATTCAG AATATAGTTC TGGGAGCCCA GGGGGGTGCA
 GGAGACCGTG ATGACCTTCA GGGGACACAA TAGGATGTAA CAGAGTCTCC AAACAGCCGG
 CCTGGGGCTG GGGTACTGGG ATTATGAACA GAGGACTAGA GAGAGAGCAG ACATGAAGCA
 CCCAGTACAC GTCGCGGATC ACTCAAAAAC GTTTGCACGC TTTCTCCCAG TCCTGAGACT
 ATGGGTCTGG ACTGATGCTC ATCTTAttta tttatttgtt attttatttt tttgagatag
 agtcttgctc tgtcacccag gctggagtgc agtggcgcaa cctccacctc ccaggttcaa
 gcgattctc
 R
 tgcctcagcc tccccagtaa gtgggattat agacatgtgc caccacaccc agctaatttt
 gtgcgtttgt atttttagta gagacagggt ttcaccatgt tggccaggct ggtctcgaac
 tcctgacctc aagtgatcca ccagccttgg cttcccaaag tggtgtgatt ataggcatga
 gccactgcgc ctggccCCAT CTTATATATG TTTTGGACAG AGTCTTGCTC TGTCATCCAA
 GCTGGAC

GeneView

GeneView via analysis of contig annotation: SRCRB4D scavenger receptor cysteine rich domain containing, group B (4 domains)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_007933->NM_080744

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_007933->NM_080744->NP_542782	1254941	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs2015834 maps exactly once on NCBI human chromosome 7

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
7	NW_923484.1	885937	70889183	minus	C	alt_assembly_1	Celera	Celera	view	369
7	NW_001839047.1	919295	71107155	minus	C	alt_assembly_8	HuRef	HuRef	view	369
7	NT_079595.2	1254941	75353729	minus	C	alt_assembly_2	CRA_TCAGchr7v2	CRA_TCAGchr7v2	view	369
7	NT_007933.14	1254941	75858601	minus	C	ref_assembly	reference	reference	view	369

NCBI Resource Links

Submitter-Referenced
GenBank
NT_007933.10

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP, NCBI

UNKNOWN

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Revised: May 25, 2006 1:38 PM .