Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss767587	SC_JCM|AC023527.2_10035		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	07/27/00	10/10/03	83	Genomic			unknown
ss994056	KWOK|OVLP-000804-22002		fwd/B	G/T	agagttagccatgtgaagtgaaggaggaag	ttggtccaaagagaaggaacagcatgtaca	09/02/00	10/10/03	86	Genomic			97 %
ss1644280	KWOK|OVLP-000925-493525		fwd/B	G/T	agagttagccatgtgaagtgaaggaggaag	ttggtccaaagagaaggaacagcatgtaca	10/04/00	10/25/06	87	Genomic			97 %
ss2177394	TSC-CSHL|TSC0550596		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	10/19/00	04/07/04	88	Genomic			95 %
ss5544936	TSC-CSHL|TSC0612717		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	09/21/02	10/10/03	108	Genomic			unknown
ss5680274	SC_JCM|NT_004538.12_373495		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	01/10/03	10/10/03	111	Genomic			unknown
ss6405735	WI_SSAHASNP|NT_004538.13_574198		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	02/12/03	10/10/03	111	Genomic			unknown
ss13003703	SC_SNP|NT_004538.14_365671		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	10/22/03	10/31/03	119	Genomic			unknown
ss16385089	CSHL-HAPMAP|CSHL-HuAA-200402.chr1.NT_004538.15_362021		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	02/17/04	03/04/04	120	Genomic			unknown
ss20438279	SSAHASNP|WGSA-200403-chr1.chr1.NT_004538.15_362021		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	03/18/04	03/18/04	121	Genomic			unknown
ss24237359	PERLEGEN|afd4507636		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	08/10/04	09/13/04	123	Genomic			unknown
ss44047021	ABI|hCV2962139		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	07/18/05	07/18/05	126	Genomic			unknown
ss65920000	AFFY|SNP_A-1748629		rev/T	A/C	atgctgttccttctctttggaccaa	cttcctccttcacttcacatggcta	10/26/06	10/26/06	127	Genomic			unknown
ss78297937	HGSV|Cor12878_SNV_20070510.chr1_28993331		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	10/17/07	10/18/07	129	Genomic			unknown
ss82990987	HGSV|Cor18956_SNV_20070510.chr1_28993331		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	11/30/07	12/04/07	130	Genomic			unknown
ss87323529	BCMHGSC_JDW|JWB-0027909		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	02/26/08	02/26/08	129	Genomic			unknown
ss108083885	1000GENOMES|CEU.trio.12.15.2008_36456_chr1_29045302		rev/T	A/C	tgtacatgctgttccttctctttggaccaa	cttcctccttcacttcacatggctaactct	12/15/08	12/15/08	130	Genomic			unknown

Fasta sequence   (Legend)

 CATGTACAAC GTCAAAGAAC CTGGGCCCTT CCATTTAAGT GCACTCATGT CAATTTGGGC
 TGGACCTCTG CCCTGGTCCT GTCACCTCTG AGGTGTCCTC AGGTCAGAAA TGCAAACAGG
 CTCggctggg cgcggtagct cacggctgta atcccagcac tttgggaggc caaggcaggc
 agatcacctg aagtcaggag tttaagacca gcctggccaa catggcgaaa ccccatctct
 attaaaaaca taaaaattag ctgggcatgg tggcgggcac ctgtaatccc agctactcag
 gaggctgaag taggagaatt ggttgaaccc gggaggcaga ggttgcagtg agctgagatc
 gcgccactga actccagcct gggccacaag agccaaactc cgtcggaaag gaaaggggac
 aggaaagggg aaaggaaagg ggacaggaaa ggggacagga aaggaaagga agggaaagga
 agaaagtaaa gaaaggaagg aaggaagaaa gagagaaaga gaaagaaaag gaaggaagga
 aggaagaaaa agaaagaaag aaagaaaaag aaagaaagag aaaagaaaga aagaaagaaa
 gaaagaaaga aagaaagaaa gaaagaaaag aaagaaagaa agaaagaaag aaaATGCAAA
 CAGCCTCCAT GTGATACAAC TCTGAATAAA TACAATGGGG CCTTTGGGAT GGTGGGATTA
 CTGCACTTAC AAGAGAGGCC CCAGAGAGCT TGCTCGCTCT CTCTCTCTCt tttttttttt
 ttttcttttt ttgagacaga gtcttgctct gtcgcccagg ctggagtgca gtgctgtaat
 ctcggctcac tgcaacctcc acctcctggg ttcaagcgat tctcgtgcct cagcctccct
 agtagctggg attacaggcg cccaccacca cgcccagcta atttttgtat ttttagtaga
 gatgcggttt cactatgttg gccaggctgg tctccagctc ctgacctcag gtgatctgcc
 cgAGTTTGCT CTCTctctct ttctctctgc catgtgaggg cagtgatgag gcagccatct
 agaggccagg aagacagccc tcaccagaac ctgaccgtgg tggcagcttg atcttgggct
 tctgtcctta cgaactgaga aactaaatct ctgttgttga agccatccag tctatatttt
 gATCTAAGAC ACAGCAACAT TTCTGCCAGG TTGgaaggat gagagttagc catgtgaagt
 gaaggaggaa g
 K
 ttggtccaaa gagaaggaac agcatgtaca aagtccctgt agcaggaaag agcctgatgg
 gctgcaggaa tggtcagaaa tcacatgtga cgacagtgta gtgagccaga aaggaggcaa
 caggagaggc ggcagcggaa atctgcagga gtcaaatcac acagggcctt tgggctatgg
 caagaagttt gggtttactc tgagtgtaac aggaagccat tgaagacttt aaacagggaa
 gtgatgtggt tcatttatgt gagtttctta aaagatcacg ctgactactg tgtggaagcc
 agatggagca caaggcagta gggagccagA GACCCAACTT TCTAGAAAGA GAAATTGTTT
 ATGGCTCCAT TTCCCAAAAC TCTACTGTTG TTCTCTAATT TTTTTTTCTG TTACAAAAGG
 TTGTGGATat gaagttgggc ctttccctta caccatatac aaaaattaac tcaaaatgga
 tcaaagatgt aagagctaaa accataaaac tcctagaaga aaatatagtg ggaaagcttc
 atgacaccag atttggcaat gatttcttGT GTTTATTTGT TTGTTTTTCT TTCTTTTTTT
 CCTCTTTTTT AAATTTCTTc ttagatttgg caatgatttc ttggatatga caccaaaagc
 ctaggccaca acaacaacaa caactacatt aagttggact atatcaattt tttttttttt
 ttttgagatg gagtctcact ctgtcgccca ggctggagtg cagtggtgca atctcggctc
 actgcaacct ctgcctcata attctcccgc ctcagcctcc caagcacctg ggattatagg
 ctcccaccag catgcccggc taattttttt tttgtatttt tagtagagac agggtttcac
 tatgtttacc aggctagtct tgaactcctg acctcaagtt atccacctac ctcggcctcc
 caaagagctg ggattacagg catgagccac cgtgcctggc cccagctaat ttttgtattt
 ttagtagaga cggggtttca ccatattggt aaggctggtc tcgaactcct gaccttgtga
 tctgcccgcc ttggcctccg aaagtgctgg gattacaggc atgagccacc atgcccggct
 gactatatca catttaaaac ttttgtgcct caaatgacac tatcatccca ggactttggg
 aggccaaggc aggtgggtca cctgaggtca ggagtttgag accagtctct ccaacatgct
 gaaaccccat ctctacaaaa aaatacaaaa attagccgag agtggtagtg cacacctgta
 atcccagcta ctcgggagac tgaggcacaa gaatcgcttg aacctgggag gtggaggttg
 cagtgagccg agattgtgcc actgcactcc agtctgggta acacagtgag actctgtcac
 cccctcaaaa aaacaaaaac aaatgacact gtcaacagaa tgaaaaggtc actcatggaa
 tgggagaaaa gatttgcaaa tcacatatct gataaggggt taatatccag actatataaa
 gaattcctac aactcaacca aaagcaaata agttaattaa aaaatgaaca agggctgagc
 acagtagctc acatctgtaa tcctagcact ttgggaggct gaggtgggtg gatcgcttga
 gtccaagagt ttgagaccag cctggccaac atggcaaaac cccatctcta caaaaaatac
 aaaaattagc tgggcatggt gacatgcgct tgtagtccca gctacttgga gggccgaggt
 gggagaatcg cttgagtcct ggaggtcgag gctgcagtga gccatgatta caccactaca
 ctccagcctg aacgacaaag tgagaccctg tcttgaatat ttccctaaaa aagatataca
 aatggccaat aagcccatga aaagatgctc aacatcacta tcattaggga aatgcaaatc
 aaaaccacaa tgagatacca cttcacacct attaagataa tgaaaaaaaa aaaaaaaaca
 gaaatcaagt attggcaagg atttgaagaa actggaactc tcgtgtaccg tttttggaaa
 tgtaaaatgg tgcagccact gtggaaaaca aaactgtaat tcctcacaaa tctgaaaata
 gaattgcctc ttatgatcaa tccaacagtt cctcttctgg tagaagaatt aaaagcaggg
 ttttgaagag ctgtgtgtat acccatgttc atagcagtat tcttcataat agctaaaagg
 tgaaagcaac ccatatatcc attgatagat ggagaaacaa aatgtggtat agacatacaa
 tggaatatta ttcaccctta aaaaagaagg aaatTTCTAG CCTGGTGGCA AAGCCAGTTT
 TACAAAAAAT ACAAAAATTA gccgggcgtg gtgatgcacg tttgtagtcc cagctactcg
 ggaggctgag gtggaatgac tgcttgaccc cgaagttgag gttgcagtaa gccgagatca
 caccactgca ctccagcatg ggcgacagag caagagcctg tctcaaaaga caaaaaaaaG
 aagaagaagg aaattctgac acctgctaca acaaggatga accttgagga tatcgtgcta
 aataaaattt gccagtcaaa aaagacaaac actgaatgat tccacttaca tgaggcacct
 agagtagtca cagtcataga ggcagaagcc ctggggttac gaggggctag ggcaagggga
 ggatgggcag ttactgctta aatggtatgg agattcagtt tgggaagatg aaaaacttct
 ggagacgaac ggttgtgatg gctgcataac agtgtgaatg tacttaatgc cactgaacta
 cacccttaaa aatggttaca atggtatttt ttatgttgtg tatattttat cacaataaaa
 aaGGCGGTAA TCAAGAGCTG TCGCTGTGTT TATTTTCTAA GCTTGGGAGT GGGGTGAGGG
 GGTCCTTTCG AGCCATTCAG ATCTTGGCTC CCCAACATAC ATAGCTCAGT GATCTTGAGC
 AAGTCACTTC ACCTTTCTGA ACCTGCTTCC TTGTTGGTAA TTTCAGTGTA ATGATGCTTT
 CTAGGAGCCG CACGTGTGAA AGCGTGCAGC ATACAAGCCA GTGTGTAGTT GAAAATTGCA
 GCCCTTTTGG TACTCCCTGA CCTGGTATTT TTCTTTTTCT TCT

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_004610->NM_000911 sv function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	G/G	G/T	T/T	HWP	G	T
ss1644280	HapMap-CEU	European	120	IG	0.300	0.467	0.233	0.655	0.533	0.467
	HapMap-HCB	Asian	90	IG	0.022	0.244	0.733	1.000	0.144	0.856
	HapMap-JPT	Asian	88	IG	0.023	0.205	0.773	0.752	0.125	0.875
	HapMap-YRI	Sub-Saharan African	120	IG	0.700	0.300		0.200	0.850	0.150
	CHMJ	Asian	74	IG					0.162	0.838
ss2177394	AfAm	African American	40	IG	0.650	0.250	0.100	0.251	0.775	0.225
	Caucasian	European	40	IG	0.200	0.500	0.300	1.000	0.450	0.550
	Asian	Asian	40	IG	0.050	0.200	0.750	0.343	0.150	0.850
	CEPH	European	56	IG	0.357	0.500	0.143	1.000	0.607	0.393
	PDpanel	Global	48	IG	0.333	0.333	0.333	0.150	0.500	0.500
ss24237359	AFD_EUR_PANEL	European	48	IG	0.167	0.542	0.292	0.655	0.438	0.562
	AFD_AFR_PANEL	African American	46	IG	0.565	0.261	0.174	0.100	0.696	0.304
	AFD_CHN_PANEL	Asian	48	IG		0.125	0.875	0.752	0.062	0.938

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN