lin2679
24 hits
238 letters
ath 
254 _ AtCh011 (249) KOG4665
sce 
170 _ YMi012 (259) KOG4665
ath 157 _ AtMi097 (349) KOG4665
ath 157 _ AtMi031 (385) KOG4665
ath 157 _ At2g07741 (385) KOG4665
spo 
107 _ SPMi006 (257) KOG4665
hsa 
101 _ HsMi001 (226) KOG4665
dme 
98 _ DmMi001 (224) KOG4665
cel 
82 _ CEMi001 (199) KOG4665
hsa 81 _ Hs22041574_2 (134) KOG4665
hsa 78 _ Hs20534865_2 (122) KOG4665
hsa 75 _ Hs22067995 (128) KOG4665
sce 74 _ YNL101w (713) KOG1304
sce 70 _ YNL318c (540) KOG0254
hsa 68 _ Hs4502287 (1220) KOG0204
hsa 67 _ Hs20589958 (752) KOG2301
ath 67 At1g28220 (351)
hsa 66 _ Hs4506813 (1977) KOG2301
cel 66 CE05971 (770)
ath 66 _ At3g59030 (507) KOG1347
sce 65 YHR142w (316)
hsa 65 _ Hs19923381 (2000) KOG2301
ath 64 _ At2g29900 (397) KOG2736
hsa 63 _ Hs16950636 (364) KOG3656
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= lin2679
(238 letters)
Database: kyva
112,920 sequences; 47,500,486 total letters
Score E
Sequences producing significant alignments: (bits) Value
AtCh011 102 7e-22
YMi012 70 4e-12
AtMi097 65 1e-10
AtMi031 65 1e-10
At2g07741 65 1e-10
SPMi006 46 8e-05
HsMi001 44 4e-04
DmMi001 42 8e-04
CEMi001 36 0.060
Hs22041574_2 36 0.078
Hs20534865_2 35 0.17
Hs22067995 33 0.39
YNL101w 33 0.50
YNL318c 32 1.5
Hs4502287 31 2.5
Hs20589958 30 3.3
At1g28220 30 3.3
Hs4506813 30 4.3
CE05971 30 4.3
At3g59030 30 4.3
YHR142w 30 5.6
Hs19923381 30 5.6
At2g29900 29 7.3
Hs16950636 29 9.5
# >AtCh011
# Length = 249
#
# Score = 102 bits (254), Expect = 7e-22
# Identities = 68/228 (29%), Positives = 115/228 (49%), Gaps = 17/228 (7%)
#
# Query: 15 FNLSNILMITVTCVIVLLI--AIICTRNLQRRPTGKQNFIEWVMDFVRGIINSNMDWKTG 72
# F + ++IT VI +L+ A++ RN Q PT QNF E+V++F+R + + + + G
# Sbjct: 35 FQVHAQVLITSWVVIAILLGSAVLAIRNPQTIPTDGQNFFEFVLEFIRDVSKTQIGEEYG 94
#
# Query: 73 GRFHVLGITLLMFIFVANMLG--LPFQIAINDEVWWRSPTADPIVTLTLAIMVLGLTHYY 130
# +G TL +FIFV+N G LP++I + +PT D T+ LA++ Y
# Sbjct: 95 PWVPFIG-TLFLFIFVSNWSGALLPWKIIQLPQGELAAPTNDINTTVALALLTSVAYFYA 153
#
# Query: 131 GIKMRGFKHYFVGTYFSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLLTIIATQLA 190
# G+ +G ++ Y P L P+ ++E+F L+L RL+GNI A E+++ ++ +
# Sbjct: 154 GLSKKGLGYF--SKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVS--- 208
#
# Query: 191 HMNIFVGVLAIIPALLWQGFSIFIGAIQAYIFTMLTMVYMSHKVSDEH 238
# V ++ IP + +F IQA IF L Y+ + H
# Sbjct: 209 ----LVPLVVPIPVMF---LGLFTSGIQALIFATLAAAYIGESMEGHH 249
#
#
# >YMi012
# Length = 259
#
# Score = 70.1 bits (170), Expect = 4e-12
# Identities = 66/239 (27%), Positives = 118/239 (48%), Gaps = 28/239 (11%)
#
# Query: 13 IDFNLSNILMITVTCVIVLLI--AIICTRNLQRRPTGKQNFI--EWVMDFVRGIINSNMD 68
# ID + N+ ++ +IVLL+ ++ N + G + I E + D + + +
# Sbjct: 29 IDLSCLNLTTFSLYTIIVLLVITSLYTLTNNNNKIIGSRWLISQEAIYDTIMNMTKGQIG 88
#
# Query: 69 WKTGGRFHVLGITLLMFIFVANMLGL-PFQIAINDEVWWRSPTADPIVTLTLAIMVLGLT 127
# K G + + TL MFIF+AN++ + P+ A++ + + I++L++ I LG T
# Sbjct: 89 GKNWGLYFPMIFTLFMFIFIANLISMIPYSFALSAHLVF-------IISLSIVIW-LGNT 140
#
# Query: 128 HYYGIKMRGFKHYFV----GTYFSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLLT 183
# G+ G+ + + GT + L ++ + FA ++LGLRL NI AG +L+
# Sbjct: 141 -ILGLYKHGWVFFSLFVPAGTPLPLVPLLVIIETLSYFARAISLGLRLGSNILAGHLLMV 199
#
# Query: 184 IIA---TQLAHMNIFVGV-----LAIIPALLWQGFSIFIGAIQAYIFTMLTMVYMSHKV 234
# I+A +N+F V LA+I A++ F+ IG IQ Y++ +LT Y+ V
# Sbjct: 200 ILAGLTFNFMLINLFTLVFGFVPLAMILAIMMLEFA--IGIIQGYVWAILTASYLKDAV 256
#
#
# >AtMi097
# Length = 349
#
# Score = 65.1 bits (157), Expect = 1e-10
# Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 34/240 (14%)
#
# Query: 16 NLSNILMITVTCVIVLLIAIICTRNLQRRPTGKQNFIEWVMDFVRGIINSNMDWKTGG-- 73
# N S +++T++ ++L+ + P Q+ +E + DFV ++ + +G
# Sbjct: 122 NPSLFMLLTLSFFLLLIHFVTKKGGGNLVPNAWQSLVELLYDFVLNLVKEQIGGLSGNVK 181
#
# Query: 74 -RFHVLGITLLMFIFVANMLGL-PFQIAINDEVWWRSPTADPIVTLTLAIMVLGLTHYYG 131
# F + +F+ N+ G+ P+ + T+ ++TL L+ + + G
# Sbjct: 182 QMFFPCILVTFLFLLFCNLQGMIPYSFTV---------TSHFLITLALSFSI-----FIG 227
#
# Query: 132 IKMRGFK----HYF-----VGTYFSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLL 182
# I + GF+ H+F G FL L+L+ L+LG+RL+ N+ AG L+
# Sbjct: 228 ITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLV 287
#
# Query: 183 TIIA----TQLAHMNIFVGVLAIIP---ALLWQGFSIFIGAIQAYIFTMLTMVYMSHKVS 235
# I++ T L +IF + A+ P L G + + +QAY+FT+L +Y++ ++
# Sbjct: 288 KILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 347
#
#
# >AtMi031
# Length = 385
#
# Score = 65.1 bits (157), Expect = 1e-10
# Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 34/240 (14%)
#
# Query: 16 NLSNILMITVTCVIVLLIAIICTRNLQRRPTGKQNFIEWVMDFVRGIINSNMDWKTGG-- 73
# N S +++T++ ++L+ + P Q+ +E + DFV ++ + +G
# Sbjct: 158 NPSLFMLLTLSFFLLLIHFVTKKGGGNLVPNAWQSLVELLYDFVLNLVKEQIGGLSGNVK 217
#
# Query: 74 -RFHVLGITLLMFIFVANMLGL-PFQIAINDEVWWRSPTADPIVTLTLAIMVLGLTHYYG 131
# F + +F+ N+ G+ P+ + T+ ++TL L+ + + G
# Sbjct: 218 QMFFPCILVTFLFLLFCNLQGMIPYSFTV---------TSHFLITLALSFSI-----FIG 263
#
# Query: 132 IKMRGFK----HYF-----VGTYFSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLL 182
# I + GF+ H+F G FL L+L+ L+LG+RL+ N+ AG L+
# Sbjct: 264 ITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLV 323
#
# Query: 183 TIIA----TQLAHMNIFVGVLAIIP---ALLWQGFSIFIGAIQAYIFTMLTMVYMSHKVS 235
# I++ T L +IF + A+ P L G + + +QAY+FT+L +Y++ ++
# Sbjct: 324 KILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 383
#
#
# >At2g07741
# Length = 385
#
# Score = 65.1 bits (157), Expect = 1e-10
# Identities = 56/240 (23%), Positives = 110/240 (45%), Gaps = 34/240 (14%)
#
# Query: 16 NLSNILMITVTCVIVLLIAIICTRNLQRRPTGKQNFIEWVMDFVRGIINSNMDWKTGG-- 73
# N S +++T++ ++L+ + P Q+ +E + DFV ++ + +G
# Sbjct: 158 NPSLFMLLTLSFFLLLIHFVTKKGGGNLVPNAWQSLVELLYDFVLNLVKEQIGGLSGNVK 217
#
# Query: 74 -RFHVLGITLLMFIFVANMLGL-PFQIAINDEVWWRSPTADPIVTLTLAIMVLGLTHYYG 131
# F + +F+ N+ G+ P+ + T+ ++TL L+ + + G
# Sbjct: 218 QMFFPCILVTFLFLLFCNLQGMIPYSFTV---------TSHFLITLALSFSI-----FIG 263
#
# Query: 132 IKMRGFK----HYF-----VGTYFSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLL 182
# I + GF+ H+F G FL L+L+ L+LG+RL+ N+ AG L+
# Sbjct: 264 ITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLV 323
#
# Query: 183 TIIA----TQLAHMNIFVGVLAIIP---ALLWQGFSIFIGAIQAYIFTMLTMVYMSHKVS 235
# I++ T L +IF + A+ P L G + + +QAY+FT+L +Y++ ++
# Sbjct: 324 KILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAIN 383
#
#
# >SPMi006
# Length = 257
#
# Score = 45.8 bits (107), Expect = 8e-05
# Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 20/166 (12%)
#
# Query: 81 TLLMFIFVANMLGL-PFQIAINDEVWWRSPTADPIVTLTLAIMVLGLTHYYGIKMRGFKH 139
# +L + I +N+L L P+ A TA I TL L+I +L G++ K
# Sbjct: 99 SLFVLILFSNLLRLIPYGYAT---------TAQLIFTLGLSISILIGATILGLQQHKAKV 149
#
# Query: 140 YFV----GTYFSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLLTIIATQL---AHM 192
# + + GT + L ++ V A L+LG+RL NI AG + ++I+ + +
# Sbjct: 150 FGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGL 209
#
# Query: 193 NIFVGVLAIIPALLWQGFSIF---IGAIQAYIFTMLTMVYMSHKVS 235
# N+ ++ +P + S+ I IQAY+F +LT +++ ++
# Sbjct: 210 NLITFIIGFLPITVLVAISLLEFGIAFIQAYVFAILTCGFINDSLN 255
#
#
# >HsMi001
# Length = 226
#
# Score = 43.5 bits (101), Expect = 4e-04
# Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
#
# Query: 72 GGRFHVLGITLLMFIFVANMLGL-PFQIAINDEVWWRSPTADPIVTLTLAIMVLGLTHYY 130
# G + ++ ++L++FI N+LGL P +PT + L +AI +
# Sbjct: 65 GRTWSLMLVSLIIFIATTNLLGLLPHSF---------TPTTQLSMNLAMAIPLWAGAVIM 115
#
# Query: 131 GIKMR---GFKHYFV-GTYFSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLLTIIA 186
# G + + H+ GT + L ++ + + L +RL NI AG +L+ +I
# Sbjct: 116 GFRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLIG 175
#
# Query: 187 TQ---LAHMNIFVGVLAIIPALLWQGFSIFIGAIQAYIFTMLTMVYM 230
# + ++ +N+ ++ +L I + IQAY+FT+L +Y+
# Sbjct: 176 SATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYL 222
#
#
# >DmMi001
# Length = 224
#
# Score = 42.4 bits (98), Expect = 8e-04
# Identities = 40/204 (19%), Positives = 88/204 (42%), Gaps = 25/204 (12%)
#
# Query: 52 IEWVMDFVRGIINSNMDWKTGGRFHVLGITLLM-------------------FIFVANML 92
# + W+ F+ ++ ++ W R++++ ++L+ FIF++
# Sbjct: 19 LNWLSTFLGLLMIPSIYWLMPSRYNIMWNSILLTLHKEFKTLLGPSGHNGSTFIFISLFS 78
#
# Query: 93 GLPFQIAINDEVWWRSPTADPIVTLTLAIMVLGLTHYYGIKMRGFKHYFV-----GTYFS 147
# + F + + + T+ +TL+LA+ + YG + +H F GT
# Sbjct: 79 LILFNNFMGLFPYIFTSTSHLTLTLSLALPLWLCFMLYGW-INHTQHMFAHLVPQGTPAI 137
#
# Query: 148 PMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLLTIIATQLAHMNIFVGVLAIIPALLW 207
# M F+ ++ + TL +RL N+ AG +LLT++ + M+ + ++ +
# Sbjct: 138 LMPFMVCIETISNIIRPGTLAVRLTANMIAGHLLLTLLGNTGSSMSYMLMTFLLMAQIAL 197
#
# Query: 208 QGFSIFIGAIQAYIFTMLTMVYMS 231
# + IQ+Y+F +L+ +Y S
# Sbjct: 198 LVLESAVAMIQSYVFAVLSTLYSS 221
#
#
# >CEMi001
# Length = 199
#
# Score = 36.2 bits (82), Expect = 0.060
# Identities = 25/92 (27%), Positives = 46/92 (49%), Gaps = 12/92 (13%)
#
# Query: 144 TYFSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLLTII----ATQLAHMNIFVGVL 199
# TY + L +++V EF+ L L +RL NI G ++ ++ + I++ +L
# Sbjct: 115 TYLKTLSMLL-IEIVSEFSRPLALTVRLTVNITVGHLVSMMLYQGLELSMGDQYIWLSIL 173
#
# Query: 200 AIIPALLWQGFSIFIGAIQAYIFTMLTMVYMS 231
# AI+ F+ IQ+YIF+ L +Y++
# Sbjct: 174 AIM-------MECFVFFIQSYIFSRLIFLYLN 198
#
#
# >Hs22041574_2
# Length = 134
#
# Score = 35.8 bits (81), Expect = 0.078
# Identities = 24/86 (27%), Positives = 44/86 (50%), Gaps = 7/86 (8%)
#
# Query: 152 LFPLKLVEE----FANTLTLGLRLYGNIFAGEVLLTII---ATQLAHMNIFVGVLAIIPA 204
# L P+ ++ E F + L ++L I AG +L+ +I L+ +++ +A+I
# Sbjct: 45 LIPILVITETISLFIQPMVLAVQLTAKITAGHLLIHLIRGATLALSTISLPTASIALIIL 104
#
# Query: 205 LLWQGFSIFIGAIQAYIFTMLTMVYM 230
# +L I IQAY+FT+L +Y+
# Sbjct: 105 ILLTILKFAIALIQAYVFTLLVGLYL 130
#
#
# >Hs20534865_2
# Length = 122
#
# Score = 34.7 bits (78), Expect = 0.17
# Identities = 25/95 (26%), Positives = 42/95 (43%), Gaps = 10/95 (10%)
#
# Query: 145 YFSPMKFLFPLKLVEEFANTLTL-------GLRLYGNIFAGEVLLTIIATQ---LAHMNI 194
# +F P PL + F T++L +RL N+ A +L+ +I L+ N+
# Sbjct: 23 HFLPQGTRIPLIPIPVFTETISLFIQPTALAVRLTANLIASHLLMRLIGGATLVLSTTNL 82
#
# Query: 195 FVGVLAIIPALLWQGFSIFIGAIQAYIFTMLTMVY 229
# + I +L + IQAY+FT+L +Y
# Sbjct: 83 PTASITFIILILLTMLQSAVALIQAYVFTLLVSLY 117
#
#
# >Hs22067995
# Length = 128
#
# Score = 33.5 bits (75), Expect = 0.39
# Identities = 21/68 (30%), Positives = 35/68 (50%), Gaps = 3/68 (4%)
#
# Query: 161 FANTLTLGLRLYGNIFAGEVLLTIIATQ---LAHMNIFVGVLAIIPALLWQGFSIFIGAI 217
# F + L +RL I AG +L+ +I L+ ++I +++I +L I I
# Sbjct: 37 FIQPIALAVRLTATITAGHLLIHLIGDATLVLSTISIPTASISLIILILLSILEFVIALI 96
#
# Query: 218 QAYIFTML 225
# QAY+FT+L
# Sbjct: 97 QAYVFTLL 104
#
#
# >YNL101w
# Length = 713
#
# Score = 33.1 bits (74), Expect = 0.50
# Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
#
# Query: 147 SPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLLTIIATQLAHMNIFVGVLAI---IP 203
# +P KF L LV A L + + G + G + T+I L NIFV ++ + I
# Sbjct: 510 NPEKFPLVLALVILTATILFISIATLGYLAYGSNVQTVILLNLPQSNIFVNLIQLFYSIA 569
#
# Query: 204 ALLWQGFSIF--IGAIQAYIFTMLTMVYMSH 232
# +L +F I I+ F T +Y+ H
# Sbjct: 570 IMLSTPLQLFPAIKIIENKFFPKFTKIYVKH 600
#
#
# >YNL318c
# Length = 540
#
# Score = 31.6 bits (70), Expect = 1.5
# Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 22/103 (21%)
#
# Query: 5 FPTISLLGIDFNLSNILMITVTCVIVLLIAI---------------ICTRNLQRRPTGKQ 49
# + T+ G + + SNI++I VTC + AI + TR +
# Sbjct: 421 YATVGTFGRETDFSNIVLIIVTCCFIFWFAITLGPVTFVLVSELFPLRTRAISMAIC--- 477
#
# Query: 50 NFIEWVMDFVRGIIN----SNMDWKTGGRFHVLGITLLMFIFV 88
# FI W+ +F+ ++ S +D+K G F + L++F ++
# Sbjct: 478 TFINWMFNFLISLLTPMIVSKIDFKLGYIFAACLLALIIFSWI 520
#
#
# >Hs4502287
# Length = 1220
#
# Score = 30.8 bits (68), Expect = 2.5
# Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
#
# Query: 8 ISLLGIDFNLSNILMITVTCVIVLLIAIICTRNLQRRPTGKQNFIEWVMDFVRGIINSNM 67
# ++ L + + +LM +T +I++L +I T +Q+RP + ++ FV
# Sbjct: 366 LTKLAVQIGKAGLLMSAITVIILVLYFVIDTFWVQKRPWLAECTPIYIQYFV-------- 417
#
# Query: 68 DWKTGGRFHVLGITLLMFIFVANMLGLPFQIAIN 101
# +F ++G+T+L+ VA GLP + I+
# Sbjct: 418 ------KFFIIGVTVLV---VAVPEGLPLAVTIS 442
#
#
# >Hs20589958
# Length = 752
#
# Score = 30.4 bits (67), Expect = 3.3
# Identities = 30/143 (20%), Positives = 62/143 (42%), Gaps = 17/143 (11%)
#
# Query: 77 VLGITLLMFI--FVANMLGLPFQIAINDEVWWRSPTADPIVTLTLAIMVLGLTHYYGIKM 134
# +LGI +FI ++ ML F + + + + S D ++T+ L ++ + Y +
# Sbjct: 468 ILGILNCVFIVYYLLEMLLKVFALGLRGYLSYPSNVFDGLLTVVLLVLEISTLAVYRLPH 527
#
# Query: 135 RGFKHYFVGTY--------------FSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEV 180
# G++ VG F ++ + +K + A+T+ LGL F G +
# Sbjct: 528 PGWRPEMVGLLSLWDMTRMLNMLIVFRFLRIIPSMKPMAVVASTV-LGLVQNMRAFGGIL 586
#
# Query: 181 LLTIIATQLAHMNIFVGVLAIIP 203
# ++ + +N+F GV+ +P
# Sbjct: 587 VVVYYVFAIIGINLFRGVIVALP 609
#
#
# >At1g28220
# Length = 351
#
# Score = 30.4 bits (67), Expect = 3.3
# Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
#
# Query: 110 TADPIVTLTLAIMVLGL-THYYGIKMRGFKHYFVG---TYFSPMKFLFPLKLVEEFANTL 165
# T + +V LT+ VLG+ T K Y G T + + + F L LVE A
# Sbjct: 136 TINAVVLLTVGAAVLGMHTETDKPVHETHKQYITGFLITVAAAVMYAFILPLVE-LAYQK 194
#
# Query: 166 TLGLRLYGNIFAGEVLLTIIATQLAHMNIFVG---------------------VLAIIPA 204
# Y + +++L ++A+ ++ + +F+ V+A+ A
# Sbjct: 195 AKQTMSYTLVLEFQLILCLLASIVSVIGMFIAGDFKALPKEAREFKLGEALFYVVAVFSA 254
#
# Query: 205 LLWQGFSIFIGAIQAYIFTMLTMV 228
# ++WQGF F+GAI IF+ ++V
# Sbjct: 255 IIWQGF--FLGAI-GLIFSTSSLV 275
#
#
# >Hs4506813
# Length = 1977
#
# Score = 30.0 bits (66), Expect = 4.3
# Identities = 13/30 (43%), Positives = 20/30 (66%)
#
# Query: 157 LVEEFANTLTLGLRLYGNIFAGEVLLTIIA 186
# + EEF N L +G ++ IFA E++L +IA
# Sbjct: 757 MTEEFKNVLAIGNLVFTGIFAAEMVLKLIA 786
#
#
# >CE05971
# Length = 770
#
# Score = 30.0 bits (66), Expect = 4.3
# Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
#
# Query: 58 FVRGIINSNMDWKTGGRFHVLGITLLMFIFVAN-------------MLGLPFQIAINDEV 104
# F+ G + + M++ GG+ TL +F F++N +L L +++ + +
# Sbjct: 489 FLIGFLTNFMNFMIGGKLIYTWKTLTIFRFLSNFKCVMKWISTLLHILLLTYKLDVINSC 548
#
# Query: 105 WWRSPTADPIVTLTLAIMVLGLT 127
# SPTADP T T A +T
# Sbjct: 549 IATSPTADPTTTTTEATTTTEIT 571
#
#
# >At3g59030
# Length = 507
#
# Score = 30.0 bits (66), Expect = 4.3
# Identities = 33/134 (24%), Positives = 61/134 (44%), Gaps = 19/134 (14%)
#
# Query: 6 PTISLLGIDF-NLSNILMITVTCVIVLLIAIICTRNLQRRPTGKQNFIEWVMD------- 57
# P +++L + N++ +L+ +V CVIVL+ + L + T I V D
# Sbjct: 348 PRVAMLSVVVVNITTVLISSVLCVIVLVFRV----GLSKAFTSDAEVIAAVSDLFPLLAV 403
#
# Query: 58 --FVRGI--INSNMDWKTGGRFHVLGITLLMFIFVANMLG--LPFQIAIN-DEVWWRSPT 110
# F+ GI I S + +G + V + L+ + + +G L F+ ++ +WW
# Sbjct: 404 SIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIA 463
#
# Query: 111 ADPIVTLTLAIMVL 124
# + TLTL ++ L
# Sbjct: 464 GVILQTLTLIVLTL 477
#
#
# >YHR142w
# Length = 316
#
# Score = 29.6 bits (65), Expect = 5.6
# Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
#
# Query: 51 FIEWVMDFVRGIINSNMDWKTGGRFHVLGITLLMFIFVANMLGLPFQIAINDEVWWRSPT 110
# F W+ D +N++ G V+ I +F+FV + L + + +W
# Sbjct: 186 FKAWITDHKVATMNAS------GMIVVVYIINAIFLFVFVICQLLVSLLVVRNLW----- 234
#
# Query: 111 ADPIVTLTLAIMVLGLTHYYGIKMR---GFKHYFVGTYFSPMKFLFPLKLV 158
# + L L V G Y + GFKHY G +F + +F L +V
# Sbjct: 235 VTGAIFLGLFFFVAGQVLVYAFSTQICEGFKHYLDGLFFGSICNVFTLMMV 285
#
#
# >Hs19923381
# Length = 2000
#
# Score = 29.6 bits (65), Expect = 5.6
# Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
#
# Query: 157 LVEEFANTLTLGLRLYGNIFAGEVLLTIIATQLAH-----MNIFVGVL 199
# + E+F++ LT+G ++ IF E++L IIA + NIF G++
# Sbjct: 784 MTEQFSSVLTVGNLVFTGIFTAEMVLKIIAMDPYYYFQEGWNIFDGII 831
#
#
# >At2g29900
# Length = 397
#
# Score = 29.3 bits (64), Expect = 7.3
# Identities = 12/46 (26%), Positives = 25/46 (54%)
#
# Query: 180 VLLTIIATQLAHMNIFVGVLAIIPALLWQGFSIFIGAIQAYIFTML 225
# + I+ + + +F ++ L+ QG+ ++IG + AY FT+L
# Sbjct: 137 ITFLILLFNFSVVGVFAVFMSKFSILITQGYLVWIGVLVAYFFTLL 182
#
#
# >Hs16950636
# Length = 364
#
# Score = 28.9 bits (63), Expect = 9.5
# Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
#
# Query: 68 DWKTGGRFHV-LGITLLMFIFVANMLGLPFQIAINDEVWWRSPTADPIVTLTLAIMVLGL 126
# +W T + + LGIT+ +FI +AN+L +AI + P + L A GL
# Sbjct: 44 EWNTVSKLVMGLGITVCIFIMLANLL---VMVAIYVNRRFHFPIYYLMANLAAADFFAGL 100
#
# Query: 127 THYYGIKMRG--FKHYFVGTYFSPMKFLFPLKLVEEFANTLTLGLRLYGNIFAGEVLLTI 184
# ++Y + G + V T+ + L L AN L + + + +F ++ +
# Sbjct: 101 AYFYLMFNTGPNTRRLTVSTWLL-RQGLIDTSLTASVANLLAIAIERHITVFRMQLHTRM 159
#
# Query: 185 IATQLAHMNIFVGVLAI----IPALLW 207
# ++ + + + +AI IP++ W
# Sbjct: 160 SNRRVVVVIVVIWTMAIVMGAIPSVGW 186
#
#
Database: kyva
Posted date: Nov 11, 2002 5:09 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Lambda K H
0.332 0.146 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,783,177
Number of Sequences: 112920
Number of extensions: 817359
Number of successful extensions: 2341
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2321
Number of HSP's gapped (non-prelim): 28
length of query: 238
length of database: 47,500,486
effective HSP length: 106
effective length of query: 132
effective length of database: 35,530,966
effective search space: 4690087512
effective search space used: 4690087512
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)