R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|9758155|dbj|BAB08712.1| (AB015477) 40S ribosomal protein S3 [Arabidopsis
thaliana]
Length = 248
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 248
0 50 100 150 200
Plus Strand HSPs:
Score = 303 (106.7 bits), Expect = 5.8e-26, P = 5.8e-26
Identities = 57/79 (72%), Positives = 65/79 (82%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
M+S GQP K+YID+AVRHVLLRQGVLG+KVKIMLDWDPKGKQGP TPLPD+V IHTPKE+
Sbjct: 157 MVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKED 216
Query: 193 EEYARPAAVLATDIEVPVA 249
+ Y PA V+ VP A
Sbjct: 217 DVYIAPAQVVTQAAFVPEA 235
>gi|11275277|pir||T45927 ribosomal protein S3a homolog - Arabidopsis thaliana
>gi|7630007|emb|CAB88349.1| (AL132960) ribosomal protein S3a
homolog [Arabidopsis thaliana]
Length = 249
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
Plus Strand HSPs:
Score = 290 (102.1 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 55/71 (77%), Positives = 60/71 (84%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
M+S GQP K+YIDSAVRHVLLRQGVLGIKVK+MLDWDPKG GPKTPLPD+V IH+PKEE
Sbjct: 157 MVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEE 216
Query: 193 EEYARPAAVLA 225
E PA V A
Sbjct: 217 EAIYAPAQVAA 227
>gi|4582468|gb|AAD24852.1|AC007071_24 (AC007071) 40S ribosomal protein;
contains C-terminal domain [Arabidopsis thaliana]
Length = 250
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 250
0 50 100 150 200
Plus Strand HSPs:
Score = 282 (99.3 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 52/71 (73%), Positives = 59/71 (83%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
M+S GQP K+YID+AVRHVLLRQGVLGIKVKIMLDWDP GK GPKTPLPD+V IH PK++
Sbjct: 157 MVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDD 216
Query: 193 EEYARPAAVLA 225
Y+ PA A
Sbjct: 217 VVYSAPAQAAA 227
>gi|6755372 ref|NP_036182.1| ribosomal protein S3 [Mus musculus]
>gi|1173253|sp|P17073|RS3_MOUSE 40S RIBOSOMAL PROTEIN S3
>gi|543317|pir||S41170 ribosomal protein S3, cytosolic - mouse
>gi|57728|emb|CAA35916.1| (X51536) ribosomal protein S3 (AA 1-243)
[Rattus rattus] >gi|439522|emb|CAA54167.1| (X76772) ribosomal
protein S3 [Mus musculus]
Length = 243
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 224 (78.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 157 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>gi|133940|sp|P02350|RS3A_XENLA 40S RIBOSOMAL PROTEIN S3A (S1A)
>gi|70851|pir||R3XL3A ribosomal protein S3a - African clawed frog
>gi|65091|emb|CAA40592.1| (X57322) ribosomal protein S1a [Xenopus
laevis]
Length = 246
Frame 1 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00548: Ribosomal protein S3 proteins. 66..95
DOMO DM00298: RIBOSOMALPROTEINS3 27..190
PFAM KH-domain: KH domain 47..95
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 104..188
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 4..68
PRODOM PD150147: RS3(13) 70..215
PRODOM PD037257: RS3A(1) RS3B(1) 217..245
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 147..183
__________________
Plus Strand HSPs:
Score = 224 (78.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 157 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>gi|70850|pir||R3RT3 ribosomal protein S3, cytosolic [validated] - rat
Length = 243
Frame 1 hits (HSPs): _____________
Annotated Domains: ________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
__________________
Annotated Domains:
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 147..183
__________________
Plus Strand HSPs:
Score = 224 (78.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 157 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>gi|1350988|sp|P47835|RS3B_XENLA 40S RIBOSOMAL PROTEIN S3B (S1B)
>gi|2119058|pir||I51635 ribosomal protein S1 - African clawed frog
>gi|587600|emb|CAA84291.1| (Z34530) ribosomal protein S1 [Xenopus
laevis] >gi|587602|emb|CAA84290.1| (Z34529) ribosomal protein
[Xenopus laevis]
Length = 246
Frame 1 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00548: Ribosomal protein S3 proteins. 66..95
PFAM KH-domain: KH domain 47..95
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 104..188
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 3..68
PRODOM PD150147: RS3(13) 70..215
PRODOM PD037257: RS3A(1) RS3B(1) 217..245
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 147..183
__________________
Plus Strand HSPs:
Score = 224 (78.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 157 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>gi|4680363|gb|AAD27643.1|AF133129_1 (AF133129) ribosomal protein S3 [Meriones
unguiculatus]
Length = 128
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 128
0 50 100
Plus Strand HSPs:
Score = 224 (78.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 42 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 101
>gi|4506721 ref|NP_000996.1| ribosomal protein S3 [Homo sapiens]
>gi|32532|emb|CAA39248.1| (X55715) ribosomal protein s3 [Homo
sapiens]
Length = 243
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 157 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>gi|11437285 ref|XP_006219.1| ribosomal protein S3 [Homo sapiens]
>gi|417719|sp|P23396|RS3_HUMAN 40S RIBOSOMAL PROTEIN S3
>gi|2144763|pir||R3HUS3 ribosomal protein S3, cytosolic - human
>gi|555941|gb|AAB60336.1| (U14990) ribosomal protein S3 [Homo
sapiens] >gi|555943|gb|AAB60337.1| (U14991) ribosomal protein S3
[Homo sapiens] >gi|555945|gb|AAB60338.1| (U14992) ribosomal protein
S3 [Homo sapiens]
Length = 243
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 157 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>gi|2500399|sp|P79891|RS3_AMBME 40S RIBOSOMAL PROTEIN S3
>gi|1836060|gb|AAB46849.1| (S83098) ribosomal protein S3 [Ambystoma
mexicanum=Mexican axolotls, embryos, Peptide, 253 aa]
Length = 253
Frame 1 hits (HSPs): _____________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | | || 253
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM KH-domain: KH domain 47..95
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 104..188
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 4..68
PRODOM PD150147: RS3(13) 70..215
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 147..183
__________________
Plus Strand HSPs:
Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 157 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDE 216
>gi|7765076|gb|AAB19349.2| (S42658) S3 ribosomal protein [Homo sapiens]
Length = 243
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 157 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>gi|9022435|gb|AAF82383.1|AF281313_1 (AF281313) ribosomal protein S3; RPS3
[Homo sapiens]
Length = 158
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 44/60 (73%), Positives = 48/60 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 72 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 131
>gi|548856|sp|Q06559|RS3_DROME 40S RIBOSOMAL PROTEIN S3 >gi|422496|pir||S35620
ribosomal protein S3.e, cytosolic - fruit fly (Drosophila
melanogaster) >gi|290275|gb|AAA28875.1| (L13690) ribosomal protein
S3/AP endonuclease DNA repair protein [Drosophila melanogaster]
>gi|7300992|gb|AAF56129.1| (AE003743) RpS3 gene product [Drosophila
melanogaster]
Length = 246
Frame 1 hits (HSPs): _______________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00298: RIBOSOMALPROTEINS3 29..192
PFAM KH-domain: KH domain 49..97
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 106..190
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 7..70
PRODOM PD150147: RS3(13) 72..226
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 149..185
__________________
Plus Strand HSPs:
Score = 222 (78.1 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 44/77 (57%), Positives = 55/77 (71%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G P DY+++A RHVLLRQGVLGIKVK+ML +DPK K GPK PLPD V++ PKEE
Sbjct: 159 MIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEE 218
Query: 193 EEYARPAAVLATDIEVP 243
+ Y P T+ ++P
Sbjct: 219 KIYETPE----TEYKIP 231
>gi|422495|pir||S32728 ribosomal protein S3 - fruit fly (Drosophila
melanogaster) >gi|296094|emb|CAA51425.1| (X72921) ribosomal protein
S3 [Drosophila melanogaster]
Length = 246
Frame 1 hits (HSPs): _______________
Annotated Domains: ________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 149..185
__________________
Plus Strand HSPs:
Score = 222 (78.1 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 44/77 (57%), Positives = 55/77 (71%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G P DY+++A RHVLLRQGVLGIKVK+ML +DPK K GPK PLPD V++ PKEE
Sbjct: 159 MIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEE 218
Query: 193 EEYARPAAVLATDIEVP 243
+ Y P T+ ++P
Sbjct: 219 KIYETPE----TEYKIP 231
>gi|1350990|sp|P48153|RS3_MANSE 40S RIBOSOMAL PROTEIN S3
>gi|527680|gb|AAB05575.1| (U12708) ribosomal protein S3 [Manduca
sexta]
Length = 243
Frame 1 hits (HSPs): _________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
__________________
Annotated Domains:
PFAM KH-domain: KH domain 48..96
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 105..189
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 3..69
PRODOM PD150147: RS3(13) 71..216
PRODOM PD110352: RS3_MANSE 218..242
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 148..184
__________________
Plus Strand HSPs:
Score = 209 (73.6 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 40/78 (51%), Positives = 51/78 (65%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G P DY+++A RHVLLRQGVLGIKVKIML WD +GK GPK P PD + + PK+E
Sbjct: 158 MIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 217
Query: 193 EEYARPAAVLATDIEVPV 246
P + + + P+
Sbjct: 218 PAPLEPTSDIRSLAPAPL 235
>gi|6094179|sp|O60128|RS3_SCHPO 40S RIBOSOMAL PROTEIN S3
>gi|7489988|pir||T39606 40s ribosomal protein s3 - fission yeast
(Schizosaccharomyces pombe) >gi|3133108|emb|CAA19033.1| (AL023554)
40s ribosomal protein s3. [Schizosaccharomyces pombe]
Length = 249
Frame 1 hits (HSPs): ________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
__________________
Annotated Domains:
PFAM KH-domain: KH domain 49..97
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 106..190
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 7..70
PRODOM PD150147: RS3(13) 72..219
PRODOM PD110355: RS3_SCHPO 221..248
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 149..185
__________________
Plus Strand HSPs:
Score = 202 (71.1 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 44/79 (55%), Positives = 53/79 (67%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI GQP D+IDSA RHVLLRQGVLG+KVKIML +PK +Q K LPD+V + PKEE
Sbjct: 159 MIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP-EPKTRQ--KKSLPDIVVVLDPKEE 215
Query: 193 EEYARPAAVLATDIEVPVA 249
E +P V+ +E A
Sbjct: 216 EPITKPYTVINQPVEAAAA 234
>gi|1350989|sp|P48152|RS3_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S3
>gi|7440100|pir||T15579 hypothetical protein C23G10.3 -
Caenorhabditis elegans >gi|9802859|gb|AAF99870.1| (U39851) Contains
similarity to Pfam domain: PF00189 (S3_C), Score=99.7,
E-value=4.7e-31, N=1 [Caenorhabditis elegans]
Length = 247
Frame 1 hits (HSPs): __________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 247
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00298: RIBOSOMALPROTEINS3 29..192
PFAM KH-domain: KH domain 49..97
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 106..190
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 7..70
PRODOM PD150147: RS3(13) 72..222
PRODOM PD110348: RS3_CAEEL 224..246
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 149..185
__________________
Plus Strand HSPs:
Score = 201 (70.8 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 44/82 (53%), Positives = 53/82 (64%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
MI G PV DYI AVRHV LRQGV+GIKVKIML +DP+G+ GP+ LPD V I P+EE
Sbjct: 159 MIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEE 218
Query: 193 EEYARPAAVLAT---DIEVPVA 249
P + D++VP A
Sbjct: 219 VLPKEPHSQHKEEKKDVQVPAA 240
>gi|7440096|pir||T01065 ribosomal protein S1 - African clawed frog (fragment)
>gi|65051|emb|CAA24702.1| (V01441) ribosomal protein S1 [Xenopus
laevis]
Length = 125
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 125
0 50 100
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 40/58 (68%), Positives = 45/58 (77%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPK 186
MI G PV Y+D+AVRHVLLRQGVLGIKVKIML DP GK GPK PLPD V + +P+
Sbjct: 30 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPKDPSGKIGPKKPLPDHVALLSPR 87
>gi|6324151 ref|NP_014221.1| Ribosomal protein S3 (rp13) (YS3); Rps3p
[Saccharomyces cerevisiae] >gi|1173255|sp|P05750|RS3_YEAST 40S
RIBOSOMAL PROTEIN S3 (YS3) (RP13) >gi|626906|pir||S48510 ribosomal
protein S3.e, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|457164|dbj|BAA04973.1| (D25285) ribosomal protein YS3
[Saccharomyces cerevisiae] >gi|1302158|emb|CAA96070.1| (Z71454) ORF
YNL178w [Saccharomyces cerevisiae] >gi|1463121|gb|AAC49380.1|
(U34347) ribosomal protein S3 [Saccharomyces cerevisiae]
Length = 240
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 193 (67.9 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 42/67 (62%), Positives = 48/67 (71%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
+I GQPV D+ID+A RHVL+RQGVLGIKVKIM D K + GPK LPD VTI PKEE
Sbjct: 157 LIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEE 214
Query: 193 EEYARPA 213
E P+
Sbjct: 215 EPILAPS 221
>gi|468426|gb|AAA35010.1| (L31405) ribosomal protein S3 [Saccharomyces
cerevisiae]
Length = 240
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 193 (67.9 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 42/67 (62%), Positives = 48/67 (71%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 192
+I GQPV D+ID+A RHVL+RQGVLGIKVKIM D K + GPK LPD VTI PKEE
Sbjct: 157 LIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEE 214
Query: 193 EEYARPA 213
E P+
Sbjct: 215 EPILAPS 221
>gi|6540574|gb|AAF16402.1| (AF207603) ribosomal protein RPS3 [Musca domestica]
Length = 165
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 165
0 50 100 150
Plus Strand HSPs:
Score = 151 (53.2 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 29/41 (70%), Positives = 33/41 (80%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGK 135
MI G P DY+++A RHVLLRQGVLGIKVKIML +DPK K
Sbjct: 124 MIHSGDPCNDYVETATRHVLLRQGVLGIKVKIMLPYDPKNK 164
>gi|1688320|gb|AAB36959.1| (U78756) RpgG [Dictyostelium discoideum]
Length = 218
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 218
0 50 100 150 200
Plus Strand HSPs:
Score = 145 (51.0 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 35/60 (58%), Positives = 39/60 (65%), Frame = +1
Query: 4 RPG-MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGK-QGP-KTPLPDLVTI 174
R G MI GQP KD+ID A RHVLLRQG LG+KV IML +D K G P PD+V I
Sbjct: 156 RDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVI 215
>gi|9558269|emb|CAC00395.1| (AL160371) probable ribosomal protein S3
[Leishmania major]
Length = 88
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | | 88
0 20 40 60 80
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 25/46 (54%), Positives = 32/46 (69%), Frame = +1
Query: 49 DSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPK 186
DSA RH +R G +G+KVKIML D G+ GP PLPD++T+ PK
Sbjct: 39 DSACRHCYMRAGCIGVKVKIMLPGDSTGRNGPSEPLPDVITVIEPK 84
>gi|3642663|gb|AAC36521.1| (U89414) ribosomal protein S3 [Mus musculus]
Length = 123
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 123
0 50 100
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 25/32 (78%), Positives = 27/32 (84%), Frame = +1
Query: 13 MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKI 108
MI G PV Y+D+AVRHVLLRQGVLGIKVKI
Sbjct: 92 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKI 123
>gi|8247324|emb|CAB92940.1| (AJ290932) putative 40S ribosomal protein S3
[Plasmodium falciparum]
Length = 110
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/64 (43%), Positives = 41/64 (64%), Frame = +1
Query: 4 RPG-MISFGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHT 180
R G +IS G+P K ++++A R L+QGVLGIKVKIML + G + LPD +++
Sbjct: 43 RDGYLISTGEPSKRFVNTATRSAQLKQGVLGIKVKIMLPTAIDTRTGLTSILPDNISVLE 102
Query: 181 PKEE 192
PK +
Sbjct: 103 PKTD 106
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.95
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.367 0.163 0.704
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.367 0.171 0.579
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.337 0.152 0.497
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.359 0.163 0.572
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.359 0.161 0.567
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.351 0.152 0.517
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 154 153 10. 74 3 12 22 0.095 34
30 0.12 36
+2 0 155 154 10. 74 3 12 22 0.095 34
30 0.12 36
+1 0 155 155 10. 74 3 12 22 0.096 34
30 0.12 36
-1 0 155 154 10. 74 3 12 22 0.095 34
30 0.12 36
-2 0 155 154 10. 74 3 12 22 0.095 34
30 0.12 36
-3 0 154 153 10. 74 3 12 22 0.095 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 26
No. of states in DFA: 597 (59 KB)
Total size of DFA: 182 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 144.13u 0.99s 145.12t Elapsed: 00:00:39
Total cpu time: 144.16u 1.01s 145.17t Elapsed: 00:00:39
Start: Wed Jan 23 15:17:51 2002 End: Wed Jan 23 15:18:30 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000