| Kingdom |
Category |
Genus/Species |
Count |
|
|
|
3 |
| Archaea |
|
|
8 |
| |
|
|
3 |
| |
Crenarchaeota |
|
2 |
| |
|
Nitrosopumilus maritimus (nmr) |
1 |
| |
|
Sulfolobus tokodaii (sto) |
1 |
| |
Euryarchaeota |
|
6 |
| |
|
Methanococcus aeolicus (mae) |
1 |
| |
|
Methanococcoides burtonii (mbu) |
2 |
| |
|
Methanosarcina mazei (mma) |
1 |
| |
|
Natronomonas pharaonis (nph) |
1 |
| |
|
Pyrococcus furiosus (pfu) |
1 |
| Bacteria |
|
|
2557 |
| |
Acidobacteria |
|
3 |
| |
|
Acidobacteria bacterium (aba) |
1 |
| |
|
Solibacter usitatus (sus) |
2 |
| |
Actinobacteria |
|
14 |
| |
|
Arthrobacter aurescens (aau) |
2 |
| |
|
Bifidobacterium adolescentis (bad) |
1 |
| |
|
Bifidobacterium longum DJO10A (blj) |
2 |
| |
|
Bifidobacterium longum NCC2705 (blo) |
1 |
| |
|
Clavibacter michiganensis subsp. michiganensis (cmi) |
1 |
| |
|
Corynebacterium urealyticum (cur) |
1 |
| |
|
Frankia alni (fal) |
1 |
| |
|
Mycobacterium smegmatis (msm) |
1 |
| |
|
Renibacterium salmoninarum (rsa) |
1 |
| |
|
Rubrobacter xylanophilus (rxy) |
1 |
| |
|
Saccharopolyspora erythraea (sen) |
2 |
| |
Bacteroides |
|
10 |
| |
|
Bacteroides thetaiotaomicron (bth) |
2 |
| |
|
Bacteroides vulgatus (bvu) |
1 |
| |
|
Flavobacterium johnsoniae (fjo) |
1 |
| |
|
Parabacteroides distasonis (pdi) |
6 |
| |
Chlamydia |
|
1 |
| |
|
Candidatus Protochlamydia amoebophila (pcu) |
1 |
| |
Cyanobacteria |
|
3 |
| |
|
Acaryochloris marina (amr) |
1 |
| |
|
Anabaena sp. PCC7120 (ana) |
1 |
| |
|
Cyanothece sp. ATCC 51142 (cyt) |
1 |
| |
Firmicutes |
|
2414 |
| |
|
Alkaliphilus metalliredigens (amt) |
5 |
| |
|
Alkaliphilus oremlandii (aoe) |
13 |
| |
|
Bacillus anthracis A2012 (baa) |
6 |
| |
|
Bacillus amyloliquefaciens (bay) |
10 |
| |
|
Bacillus cereus ATCC 10987 (bca) |
7 |
| |
|
Bacillus cereus ATCC 14579 (bce) |
8 |
| |
|
Bacillus clausii (bcl) |
19 |
| |
|
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
7 |
| |
|
Bacillus cereus ZK (bcz) |
14 |
| |
|
Bacillus halodurans (bha) |
22 |
| |
|
Bacillus licheniformis DSM13 (bld) |
20 |
| |
|
Bacillus pumilus (bpu) |
15 |
| |
|
Bacillus subtilis (bsu) |
11 |
| |
|
Bacillus thuringiensis 97-27 (btk) |
7 |
| |
|
Bacillus weihenstephanensis (bwe) |
4 |
| |
|
Clostridium acetobutylicum (cac) |
6 |
| |
|
Clostridium botulinum A ATCC 19397 (cba) |
2 |
| |
|
Clostridium botulinum B1 Okra (cbb) |
2 |
| |
|
Clostridium beijerinckii (cbe) |
36 |
| |
|
Clostridium botulinum F Langeland (cbf) |
2 |
| |
|
Clostridium botulinum A Hall (cbh) |
4 |
| |
|
Clostridium botulinum B Eklund 17B (cbk) |
4 |
| |
|
Clostridium botulinum A3 Loch Maree (cbl) |
2 |
| |
|
Clostridium botulinum A ATCC 3502 (cbo) |
1 |
| |
|
Clostridium botulinum E3 (cbt) |
7 |
| |
|
Clostridium difficile (cdf) |
14 |
| |
|
Clostridium kluyveri (ckl) |
1 |
| |
|
Clostridium novyi (cno) |
3 |
| |
|
Clostridium perfringens 13 (cpe) |
3 |
| |
|
Clostridium perfringens ATCC 13124 (cpf) |
8 |
| |
|
Clostridium perfringens SM101 (cpr) |
5 |
| |
|
Clostridium phytofermentans (cpy) |
15 |
| |
|
Clostridium tetani E88 (ctc) |
2 |
| |
|
Clostridium thermocellum (cth) |
10 |
| |
|
Desulfotomaculum reducens (drm) |
3 |
| |
|
Desulfitobacterium hafniense (dsy) |
6 |
| |
|
Enterococcus faecalis (efa) |
1420 |
| |
|
Exiguobacterium sibiricum (esi) |
9 |
| |
|
Finegoldia magna (fma) |
6 |
| |
|
Geobacillus kaustophilus (gka) |
8 |
| |
|
Geobacillus thermodenitrificans (gtn) |
6 |
| |
|
Lactobacillus acidophilus (lac) |
9 |
| |
|
Lactobacillus brevis (lbr) |
22 |
| |
|
Lactobacillus delbrueckii ATCC BAA-365 (lbu) |
1 |
| |
|
Lactobacillus casei ATCC 334 (lca) |
27 |
| |
|
Lactobacillus casei BL23 (lcb) |
39 |
| |
|
Leuconostoc citreum (lci) |
8 |
| |
|
Lactobacillus fermentum (lfe) |
35 |
| |
|
Lactobacillus gasseri (lga) |
6 |
| |
|
Lactobacillus helveticus (lhe) |
1 |
| |
|
Listeria innocua (lin) |
23 |
| |
|
Lactobacillus johnsonii (ljo) |
10 |
| |
|
Lactococcus lactis subsp. lactis IL1403 (lla) |
33 |
| |
|
Lactococcus lactis subsp. cremoris SK11 (llc) |
11 |
| |
|
Lactococcus lactis subsp. cremoris MG1363 (llm) |
16 |
| |
|
Leuconostoc mesenteroides (lme) |
15 |
| |
|
Listeria monocytogenes F2365 (lmf) |
20 |
| |
|
Listeria monocytogenes EGD-e (lmo) |
7 |
| |
|
Lactobacillus plantarum (lpl) |
43 |
| |
|
Lactobacillus reuteri F275 (JGI) (lre) |
2 |
| |
|
Lactobacillus reuteri F275 (Kitasato) (lrf) |
8 |
| |
|
Lactobacillus sakei (lsa) |
35 |
| |
|
Lactobacillus salivarius (lsl) |
23 |
| |
|
Lysinibacillus sphaericus (lsp) |
8 |
| |
|
Listeria welshimeri SLCC5334 (lwe) |
15 |
| |
|
Moorella thermoacetica (mta) |
3 |
| |
|
Natranaerobius thermophilus (nth) |
1 |
| |
|
Oceanobacillus iheyensis (oih) |
16 |
| |
|
Oenococcus oeni (ooe) |
11 |
| |
|
Pediococcus pentosaceus (ppe) |
30 |
| |
|
Pelotomaculum thermopropionicum (pth) |
1 |
| |
|
Staphylococcus aureus USA300 (saa) |
1 |
| |
|
Staphylococcus aureus RF122 (sab) |
7 |
| |
|
Staphylococcus aureus Newman (sae) |
7 |
| |
|
Streptococcus agalactiae 2603 (serotype V) (sag) |
7 |
| |
|
Staphylococcus aureus JH1 (sah) |
1 |
| |
|
Staphylococcus aureus JH9 (saj) |
1 |
| |
|
Streptococcus agalactiae A909 (serotype Ia) (sak) |
8 |
| |
|
Streptococcus agalactiae NEM316 (serotype III) (san) |
2 |
| |
|
Staphylococcus aureus NCTC8325 (sao) |
1 |
| |
|
Staphylococcus aureus MRSA252 (sar) |
4 |
| |
|
Staphylococcus aureus MSSA476 (sas) |
2 |
| |
|
Staphylococcus aureus Mu3 (saw) |
2 |
| |
|
Staphylococcus aureus USA300 TCH1516 (sax) |
1 |
| |
|
Staphylococcus epidermidis ATCC 12228 (sep) |
5 |
| |
|
Staphylococcus epidermidis RP62A (ser) |
8 |
| |
|
Streptococcus equi (sez) |
6 |
| |
|
Streptococcus gordonii (sgo) |
9 |
| |
|
Staphylococcus haemolyticus (sha) |
10 |
| |
|
Streptococcus mutans (smu) |
8 |
| |
|
Streptococcus pyogenes MGAS10394 (serotype M6) (spa) |
3 |
| |
|
Streptococcus pneumoniae D39 (spd) |
1 |
| |
|
Streptococcus pyogenes Manfredo (serotype M5) (spf) |
1 |
| |
|
Streptococcus pyogenes MGAS10750 (serotype M3) (spi) |
4 |
| |
|
Streptococcus pyogenes MGAS8232 (serotype M18) (spm) |
1 |
| |
|
Streptococcus pneumoniae TIGR4 (spn) |
3 |
| |
|
Streptococcus pyogenes SSI-1 (serotype M3) (sps) |
2 |
| |
|
Streptococcus pneumoniae Hungary19A 6 (spv) |
2 |
| |
|
Streptococcus pneumoniae CGSP14 (spw) |
12 |
| |
|
Streptococcus pneumoniae G54 (spx) |
5 |
| |
|
Streptococcus sanguinis (ssa) |
6 |
| |
|
Staphylococcus saprophyticus (ssp) |
3 |
| |
|
Streptococcus suis 05ZYH33 (ssu) |
2 |
| |
|
Streptococcus suis 98HAH33 (ssv) |
21 |
| |
|
Streptococcus thermophilus CNRZ1066 (stc) |
2 |
| |
|
Streptococcus thermophilus LMD-9 (ste) |
11 |
| |
|
Thermoanaerobacter sp. X514 (tex) |
3 |
| |
|
Thermoanaerobacter pseudethanolicus (tpd) |
5 |
| |
|
Thermoanaerobacter tengcongensis (tte) |
5 |
| |
Fusobacteria |
|
4 |
| |
|
Fusobacterium nucleatum (fnu) |
4 |
| |
Green nonsulfur bacteria |
|
4 |
| |
|
Herpetosiphon aurantiacus (hau) |
2 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
2 |
| |
Green sulfur bacteria |
|
3 |
| |
|
Chlorobium chlorochromatii (cch) |
1 |
| |
|
Chlorobaculum parvum NCIB 8327 (cpc) |
1 |
| |
|
Chloroherpeton thalassium (cts) |
1 |
| |
Hyperthermophilic bacteria |
|
4 |
| |
|
Petrotoga mobilis (pmo) |
4 |
| |
Planctomyces |
|
1 |
| |
|
Rhodopirellula baltica (rba) |
1 |
| |
Proteobacteria |
|
82 |
| |
|
Acidovorax avenae (aav) |
1 |
| |
|
Acinetobacter baumannii AYE (aby) |
1 |
| |
|
Acidovorax sp. JS42 (ajs) |
5 |
| |
|
Actinobacillus pleuropneumoniae AP76 (serotype 7) (apa) |
1 |
| |
|
Actinobacillus pleuropneumoniae JL03 (serotype 3) (apj) |
2 |
| |
|
Agrobacterium tumefaciens C58 (UWash/Dupont) (atu) |
1 |
| |
|
Azoarcus sp. BH72 (azo) |
1 |
| |
|
Bordetella avium (bav) |
1 |
| |
|
Burkholderia cenocepacia J2315 (bcj) |
2 |
| |
|
Burkholderia phymatum (bph) |
1 |
| |
|
Campylobacter jejuni subsp. doylei 269.97 (cjd) |
1 |
| |
|
Campylobacter jejuni RM1221 (cjr) |
1 |
| |
|
Citrobacter koseri ATCC BAA-895 (cko) |
2 |
| |
|
Desulfotalea psychrophila (dps) |
1 |
| |
|
Dinoroseobacter shibae (dsh) |
1 |
| |
|
Erwinia carotovora (eca) |
1 |
| |
|
Escherichia coli O157 EDL933 (EHEC) (ece) |
1 |
| |
|
Escherichia coli O157 EC4115 (EHEC) (ecf) |
1 |
| |
|
Escherichia coli ATCC 8739 (ecl) |
7 |
| |
|
Enterobacter sakazakii (esa) |
4 |
| |
|
Francisella philomiragia (fph) |
1 |
| |
|
Geobacter lovleyi (glo) |
1 |
| |
|
Geobacter uraniumreducens (gur) |
1 |
| |
|
Helicobacter acinonychis (hac) |
2 |
| |
|
Helicobacter pylori HPAG1 (hpa) |
1 |
| |
|
Klebsiella pneumoniae 342 (kpe) |
3 |
| |
|
Klebsiella pneumoniae (kpn) |
3 |
| |
|
Ochrobactrum anthropi (oan) |
1 |
| |
|
Psychromonas ingrahamii (pin) |
1 |
| |
|
Proteus mirabilis (pmr) |
1 |
| |
|
Polaromonas naphthalenivorans (pna) |
1 |
| |
|
Photobacterium profundum (ppr) |
1 |
| |
|
Pseudomonas syringae pv. syringae B728a (psb) |
2 |
| |
|
Ralstonia eutropha JMP134 (reu) |
1 |
| |
|
Rhizobium leguminosarum (rle) |
1 |
| |
|
Rhodopseudomonas palustris BisB18 (rpc) |
1 |
| |
|
Rhodopseudomonas palustris BisA53 (rpe) |
1 |
| |
|
Ralstonia solanacearum (rso) |
1 |
| |
|
Sphingopyxis alaskensis (sal) |
1 |
| |
|
Shigella boydii CDC 3083-94 (sbc) |
5 |
| |
|
Shigella boydii Sb227 (sbo) |
1 |
| |
|
Shigella dysenteriae (sdy) |
3 |
| |
|
Salmonella enterica subsp. enterica serovar Agona (sea) |
1 |
| |
|
Salmonella enterica subsp. arizonae (ses) |
2 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
1 |
| |
|
Shewanella halifaxensis (shl) |
1 |
| |
|
Shigella sonnei (ssn) |
3 |
| |
|
Vibrio parahaemolyticus (vpa) |
2 |
| |
|
Xanthomonas campestris pv. campestris B100 (xca) |
1 |
| |
|
Yersinia enterocolitica (yen) |
1 |
| |
Spirochete |
|
2 |
| |
|
Treponema denticola (tde) |
2 |
| |
Synergistetes |
|
6 |
| |
|
Caldicellulosiruptor saccharolyticus (csc) |
4 |
| |
|
Syntrophomonas wolfei (swo) |
2 |
| |
Tenericutes |
|
3 |
| |
|
Mycoplasma arthritidis (mat) |
1 |
| |
|
Mycoplasma capricolum (mcp) |
1 |
| |
|
Mycoplasma mobile (mmo) |
1 |
| |
Verrucomicrobia |
|
3 |
| |
|
Akkermansia muciniphila (amu) |
2 |
| |
|
Methylacidiphilum infernorum (min) |
1 |
| Eukaryotes |
|
|
28 |
| |
Animals |
|
9 |
| |
|
Caenorhabditis briggsae (cbr) |
1 |
| |
|
Drosophila pseudoobscura (dpo) |
1 |
| |
|
Homo sapiens (human) (hsa) |
1 |
| |
|
Macaca mulatta (rhesus monkey) (mcc) |
1 |
| |
|
Mus musculus (mouse) (mmu) |
1 |
| |
|
Rattus norvegicus (rat) (rno) |
4 |
| |
Fungi |
|
2 |
| |
|
Debaryomyces hansenii (dha) |
1 |
| |
|
Vanderwaltozyma polyspora (vpo) |
1 |
| |
Plants |
|
2 |
| |
|
Arabidopsis thaliana (thale cress) (ath) |
1 |
| |
|
Physcomitrella patens subsp. patens (ppp) |
1 |
| |
Protists |
|
15 |
| |
|
Dictyostelium discoideum (ddi) |
3 |
| |
|
Entamoeba histolytica (ehi) |
1 |
| |
|
Leishmania major (lma) |
1 |
| |
|
Monosiga brevicollis (mbr) |
1 |
| |
|
Plasmodium falciparum HB3 (pfh) |
1 |
| |
|
Paramecium tetraurelia (ptm) |
2 |
| |
|
Tetrahymena thermophila (tet) |
3 |
| |
|
Trichomonas vaginalis (tva) |
3 |
| NULL |
|
|
110 |
| TOTAL |
|
|
2706 |
![[space]](http://compbio.ornl.gov/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}