proteins
1 BUDs| 43 proteins |
K | COG1386 | Predicted transcriptional regulator containing the HTH domain | Help | |
|---|---|---|---|---|---|
| 6 from | query genome Mesorhizobium loti (Rhizobiales | Alphaproteobacteria) | ||||
| 1 BUDs | mll1087 (mll9345 mll9646 mlr6199 mlr9362 msr6263 ) | ||||
254 letters 0
0 1280 = |||mll1087 (254) = -22
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mll1087
(254 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
mll1087 497 e-141
BMEI1085 311 1e-84
SMc02069 293 3e-79
AGc3137 280 2e-75
CC2004 204 1e-52
XF2452_1 125 9e-29
RSc1285 102 6e-22
NMA0951 99 9e-21
CAC2060 97 3e-20
PA3197 97 4e-20
BS_ypuH 95 2e-19
BH1561 94 3e-19
AF1580 67 5e-11
NMB0739_2 64 3e-10
MA4332_1 60 6e-09
PA2402_3 29 8.8
# >mll1087
# Length = 254
#
# Score = 497 bits (1280), Expect = e-141
# Identities = 254/254 (100%), Positives = 254/254 (100%)
#
# Query: 1 MSERANASVIPFKVDDELEGDLDQTSAENPVQNPAERLHIAEAVRMAEAIVFASTEPVSE 60
# MSERANASVIPFKVDDELEGDLDQTSAENPVQNPAERLHIAEAVRMAEAIVFASTEPVSE
# Sbjct: 1 MSERANASVIPFKVDDELEGDLDQTSAENPVQNPAERLHIAEAVRMAEAIVFASTEPVSE 60
#
# Query: 61 KQLAARLPDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAGDLAFLMSRDTVQQRKL 120
# KQLAARLPDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAGDLAFLMSRDTVQQRKL
# Sbjct: 61 KQLAARLPDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAGDLAFLMSRDTVQQRKL 120
#
# Query: 121 SRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETEWVRMRGRRKTPGRPVTYG 180
# SRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETEWVRMRGRRKTPGRPVTYG
# Sbjct: 121 SRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETEWVRMRGRRKTPGRPVTYG 180
#
# Query: 181 TTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQPPADPDLLTEDEDPLTDID 240
# TTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQPPADPDLLTEDEDPLTDID
# Sbjct: 181 TTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQPPADPDLLTEDEDPLTDID 240
#
# Query: 241 LEELGLLTPRVTED 254
# LEELGLLTPRVTED
# Sbjct: 241 LEELGLLTPRVTED 254
#
#
# >BMEI1085
# Length = 230
#
# Score = 311 bits (796), Expect = 1e-84
# Identities = 152/223 (68%), Positives = 182/223 (81%)
#
# Query: 28 ENPVQNPAERLHIAEAVRMAEAIVFASTEPVSEKQLAARLPDGINVALAMAELQQVYSRR 87
# E PA + +AE R+ EAIVFAS++PV E+ LA RLP +++A + LQ+VY R
# Sbjct: 6 EEEQAGPASPVTLAELARIVEAIVFASSQPVCERALAERLPANVDIAPVLNHLQKVYEGR 65
#
# Query: 88 GVNLVRVGDAWAFRTAGDLAFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRG 147
# GV+ V+VG WAFRTA DLAF+M+R+TVQQRKLSRA +EVLAIIAYHQPVTRAE+EDIRG
# Sbjct: 66 GVHFVKVGSGWAFRTAPDLAFIMNRETVQQRKLSRATMEVLAIIAYHQPVTRAELEDIRG 125
#
# Query: 148 VETSKGTLDTLLETEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKGAG 207
# VETSKGTLD L+ET W+++RGRR+TPGRPVTYGTT+ FLDHF L EIRDLPG+EEL+GAG
# Sbjct: 126 VETSKGTLDVLMETGWIKLRGRRRTPGRPVTYGTTDAFLDHFGLPEIRDLPGLEELRGAG 185
#
# Query: 208 LLSGRMPSNFSIPQPPADPDLLTEDEDPLTDIDLEELGLLTPR 250
# LLS R+PS+F++P P DPD LTE EDPL DIDLE LGLL PR
# Sbjct: 186 LLSARIPSSFAVPIPNIDPDELTEGEDPLEDIDLEGLGLLAPR 228
#
#
# >SMc02069
# Length = 239
#
# Score = 293 bits (749), Expect = 3e-79
# Identities = 148/213 (69%), Positives = 174/213 (81%), Gaps = 1/213 (0%)
#
# Query: 42 EAVRMAEAIVFASTEPVSEKQLAARLPDGINVALAMAELQQVYSRRGVNLVRVGDAWAFR 101
# EA R+AEA+VFAS +PVSE +A RLP G++V MA L+ Y+ GVNLV+V D WAFR
# Sbjct: 27 EAERIAEALVFASAQPVSEAYIAGRLPRGVDVGSVMARLKNRYAGSGVNLVQVADHWAFR 86
#
# Query: 102 TAGDLAFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLET 161
# TA DL+F+++ D + RKLSRAALEVLAIIAYHQPVTRAEIEDIRGV+TSKGTLD L+E
# Sbjct: 87 TAADLSFVVNTDEQEVRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLMEA 146
#
# Query: 162 EWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQ 221
# WVR RGRR+TPGRPVT+GTT FLDHF LEEIRDLPG+EELKGAGLLSGR+PS+ +IP
# Sbjct: 147 GWVRFRGRRRTPGRPVTFGTTRDFLDHFGLEEIRDLPGIEELKGAGLLSGRVPSHLNIPV 206
#
# Query: 222 PPADPDLLTEDEDPLTDIDLEELGLLTPRVTED 254
# P D D E+EDP+T +DLEELGLLTP+ ED
# Sbjct: 207 PIGD-DEFAENEDPITQMDLEELGLLTPKPEED 238
#
#
# >AGc3137
# Length = 250
#
# Score = 280 bits (717), Expect = 2e-75
# Identities = 140/210 (66%), Positives = 167/210 (78%), Gaps = 1/210 (0%)
#
# Query: 40 IAEAVRMAEAIVFASTEPVSEKQLAARLPDGINVALAMAELQQVYSRRGVNLVRVGDAWA 99
# + EA R+ EA+VFAS EPVS +A RLP G+++ + L+ Y RGVNLV+VG WA
# Sbjct: 35 LKEAERITEALVFASAEPVSVAFIAERLPRGMDIVAILHRLKAAYGERGVNLVQVGGQWA 94
#
# Query: 100 FRTAGDLAFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLL 159
# FRTAGDL+F++ + + +KLSRAALEVLAIIAYHQPVTRAEIE+IRGV+TS+GTLD L+
# Sbjct: 95 FRTAGDLSFVIRTEEKEPKKLSRAALEVLAIIAYHQPVTRAEIEEIRGVQTSRGTLDVLM 154
#
# Query: 160 ETEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSI 219
# E WVR RGRR+TPGRPVT GTT FLDHF LEE+RDLPG+EELKGAGLLSGR+PSNF +
# Sbjct: 155 EAGWVRFRGRRRTPGRPVTIGTTVEFLDHFGLEELRDLPGLEELKGAGLLSGRIPSNFGV 214
#
# Query: 220 PQPPADPDLLTEDEDPLTDIDLEELGLLTP 249
# P P D L EDEDP+T +DLEELGLL P
# Sbjct: 215 PLPMMS-DELREDEDPITQLDLEELGLLAP 243
#
#
# >CC2004
# Length = 221
#
# Score = 204 bits (520), Expect = 1e-52
# Identities = 105/210 (50%), Positives = 142/210 (67%), Gaps = 7/210 (3%)
#
# Query: 45 RMAEAIVFASTEPVSEKQLAARLPDGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAG 104
# R EA++FA+ EP+S+ LA RLP+G ++A + L+ Y RGV L V W F+TA
# Sbjct: 11 RCIEALLFAAAEPLSDVDLAKRLPEGADIAAGIDALRVRYEGRGVELACVAGRWRFQTAA 70
#
# Query: 105 DLAFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETEWV 164
# DL+FLM+ + + R+LS+AA E LAI+AYHQPVTRAEIE +RGV+ S+GT+D LLE +
# Sbjct: 71 DLSFLMTEEREEPRRLSKAAQETLAIVAYHQPVTRAEIEAVRGVQASRGTIDVLLELGLI 130
#
# Query: 165 RMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIPQPPA 224
# RMRGRR+TPGRPVT+GTT+ F++H+ L + DLPG+ E+K AGLL +P F++P P
# Sbjct: 131 RMRGRRRTPGRPVTFGTTDAFMEHYGLATLADLPGIAEMKAAGLLEMNLPPGFTVPDPLG 190
#
# Query: 225 DPDLLTEDEDPLTDIDLEELGLLTPRVTED 254
# E+EDPL D E TP +D
# Sbjct: 191 --LRAGEEEDPLDFDDGE-----TPEFAQD 213
#
#
# >XF2452_1
# Length = 193
#
# Score = 125 bits (314), Expect = 9e-29
# Identities = 70/191 (36%), Positives = 106/191 (54%), Gaps = 6/191 (3%)
#
# Query: 30 PVQNPAERLHIAEAVRMAEAIVFASTEPVSEKQLAARLPDGI-----NVALAMAELQQVY 84
# P +L + R+ E + AS +P++ QL P+ ++ A+ LQ
# Sbjct: 2 PPHEADTQLDLTLIARIVEGALLASNQPLTLAQLQGLFPNDPPIPPDSIQRAIELLQHTC 61
#
# Query: 85 SRRGVNLVRVGDAWAFRTAGDL-AFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIE 143
# + R V LV V + F+ D+ A++ T ++ K SRA LE LA+IAY QP+TR EIE
# Sbjct: 62 AERSVELVEVASGFRFQLKADVHAWVTPLWTERKTKYSRATLETLALIAYRQPITRGEIE 121
#
# Query: 144 DIRGVETSKGTLDTLLETEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEEL 203
# IRGV + + TL E EW+R+ G R PG+P +GTT+ FLD+F L+ + +LP + +L
# Sbjct: 122 QIRGVAVNSNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPLSDL 181
#
# Query: 204 KGAGLLSGRMP 214
# K G L ++P
# Sbjct: 182 KDIGELEPQLP 192
#
#
# >RSc1285
# Length = 304
#
# Score = 102 bits (255), Expect = 6e-22
# Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 4/171 (2%)
#
# Query: 38 LHIAEAVRMAEAIVFASTEPVSEKQLAARLPDGIN---VALAMAELQQVYSRRGVNLVRV 94
# ++ EA + E + + +P+ L + ++ + + + EL+Q + RGV LV +
# Sbjct: 1 MNTQEAKIVLETALICAQDPLRVSDLRKLFDEDVSADTIRVLLEELRQDWLDRGVELVAL 60
#
# Query: 95 GDAWAFRTAGDL-AFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKG 153
# W ++ ++ A+L + K SRA +E LAIIAY QPVTR +IEDIRGV +
# Sbjct: 61 ASGWRLQSRPEMRAYLDRLHPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIRGVTVNTQ 120
#
# Query: 154 TLDTLLETEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELK 204
# + + + WV + G R PGRP Y TT+ FLD L + +LP +E+ +
# Sbjct: 121 VIKQIEDRGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPLEDAR 171
#
#
# >NMA0951
# Length = 200
#
# Score = 99.0 bits (245), Expect = 9e-21
# Identities = 65/198 (32%), Positives = 99/198 (49%), Gaps = 16/198 (8%)
#
# Query: 46 MAEAIVFASTEPVSEKQLAARLPDGIN---VALAMAELQQVYSRRGVNLVRVGDAWAFRT 102
# + EA + TEP++EK + ++ + +A+L+ + R + LV + W F+
# Sbjct: 10 LIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQI 69
#
# Query: 103 AGDLAFLMSRDTVQQR--KLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLE 160
# AF +QR + SRA +E LAIIAY QPVTR +IE IRGV S+ + TL +
# Sbjct: 70 V-QTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNVIQTLQD 128
#
# Query: 161 TEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKGAGLLSGRMPSNFSIP 220
# W+ + G R T G+P + TT TFL L+ + +LP + EL G + +
# Sbjct: 129 RGWIEVIGHRDTLGKPALWATTATFLSDLRLDGLEELPPLTEL-------GELVLPDLME 181
#
# Query: 221 QPPAD---PDLLTEDEDP 235
# PP D P+ + D P
# Sbjct: 182 MPPTDEEEPEAVPSDTLP 199
#
#
# >CAC2060
# Length = 202
#
# Score = 97.1 bits (240), Expect = 3e-20
# Identities = 60/161 (37%), Positives = 97/161 (59%), Gaps = 6/161 (3%)
#
# Query: 48 EAIVFASTEPVSEKQLAARLPDGINVALAMAE---LQQVYSRRGVNLVRVGDAWAFRTAG 104
# E+++F S EP+ KQ++A L A + L+ + RGV L+ + D++ T
# Sbjct: 25 ESLLFVSGEPLKLKQISAILECTTKRAQEVLNNMMLKYNDNCRGVKLININDSYQLVTKN 84
#
# Query: 105 DLAFLMSR--DTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETE 162
# + + + + T ++ LS+AALE LAIIAY QP+TR ++++IRGV++ + L TL E +
# Sbjct: 85 ENSDYVRKLLKTNTRQALSQAALETLAIIAYKQPITRIDVDEIRGVKSDRAIL-TLQEKK 143
#
# Query: 163 WVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEEL 203
# ++ GR PGRP+ Y TT+ FL +F L I +LP ME++
# Sbjct: 144 LIQECGRLDVPGRPILYETTDEFLKNFNLGNIDELPPMEQI 184
#
#
# >PA3197
# Length = 332
#
# Score = 96.7 bits (239), Expect = 4e-20
# Identities = 59/169 (34%), Positives = 93/169 (54%), Gaps = 6/169 (3%)
#
# Query: 42 EAVRMAEAIVFASTEPVSEKQLA-----ARLPDGINVALAMAELQQVYSRRGVNLVRVGD 96
# E + E I+ A+ +P+S ++LA A P+ A+A L + R L V
# Sbjct: 8 ELATLLEGILLAAGKPLSLERLAELFDEAERPEPGQFRDALAILALSCAGRSFELKEVAS 67
#
# Query: 97 AWAFRTAGDLAFLMSRDTVQQ-RKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTL 155
# + + + + R ++ ++ SRA LE L +IAY QP+TR EIE+IRGV + +
# Sbjct: 68 GYRLQIRERFSPWVGRLWEERPQRYSRALLETLVLIAYRQPITRGEIEEIRGVAVNTQIV 127
#
# Query: 156 DTLLETEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELK 204
# TL+E EW+R+ G R+ PGRP TT+ FLD+F L+ + +LP + L+
# Sbjct: 128 KTLMEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPLSALR 176
#
#
# >BS_ypuH
# Length = 197
#
# Score = 94.7 bits (234), Expect = 2e-19
# Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
#
# Query: 38 LHIAEAVRMAEAIVFAS-TEPVSEKQLAARLP-DGINVALAMAELQQVY--SRRGVNLVR 93
# L I + EA+++A+ E +++KQL L + + MA++ Y RG+ L+
# Sbjct: 3 LDIVNWKAIVEALLYAAGDEGLTKKQLLTVLEIEEPELNTIMADVADEYRGDTRGIELIE 62
#
# Query: 94 VGDAWAFRTAGDLA-FLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSK 152
# D + T D A +L V + LS+A+LEVLAI++Y QP+TRAEIE+IRGV+ S+
# Sbjct: 63 YADTYMLSTKKDFAPYLKKLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEEIRGVK-SE 121
#
# Query: 153 GTLDTLLETEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEE 202
# L +L+ + GR PGR + YGTT TFL+ F L+ + +LP + E
# Sbjct: 122 RILHSLVAKALLCEVGRADGPGRAILYGTTPTFLEQFGLKTLDELPPLPE 171
#
#
# >BH1561
# Length = 197
#
# Score = 94.0 bits (232), Expect = 3e-19
# Identities = 54/136 (39%), Positives = 78/136 (56%), Gaps = 3/136 (2%)
#
# Query: 69 DGINVALAMAELQQVYSRRGVNLVRVGDAWAFRTAGDLA--FLMSRDTVQQRKLSRAALE 126
# D + AL L RG+ + V A+ T +LA F + Q LS+AALE
# Sbjct: 36 DVVYAALEELRLSYTDEARGLRIEEVAHAFRLSTKPELAPYFKKLALSTLQSGLSQAALE 95
#
# Query: 127 VLAIIAYHQPVTRAEIEDIRGVETSKGTLDTLLETEWVRMRGRRKTPGRPVTYGTTETFL 186
# LAIIAY QP+TR E++++RGV++ K + TL ++ GR + GRP+ YGTT FL
# Sbjct: 96 TLAIIAYRQPITRIEVDEVRGVKSEK-AIQTLTSRLLIKEVGRAQGTGRPILYGTTPQFL 154
#
# Query: 187 DHFALEEIRDLPGMEE 202
# DHF L+ +++LP + E
# Sbjct: 155 DHFGLKSLKELPPLPE 170
#
#
# >AF1580
# Length = 166
#
# Score = 66.6 bits (161), Expect = 5e-11
# Identities = 51/169 (30%), Positives = 83/169 (48%), Gaps = 14/169 (8%)
#
# Query: 42 EAVRMAEAIVFASTEPVSEKQLAARL-PDGINVALAMAELQQVYSRR--GVNLVRVGDAW 98
# E ++ EAI+F+S+EPV ++L D + + A+ EL + Y R + +++VG+ +
# Sbjct: 2 ELKKIVEAILFSSSEPVDARELRKITGKDKVEILNAIGELIKDYESRDTSIEIIKVGEKY 61
#
# Query: 99 AFRTAGDLAFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDTL 158
# R A + R TV R+ R L LA+IA QP+T A++ IRG + +
# Sbjct: 62 LMRVKPQYAEYVERFTV--REFDRGTLRTLAVIALKQPITLAKVAKIRGNKCYE------ 113
#
# Query: 159 LETEWVRMRG--RRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKG 205
# + ++ RG + + GR TTE F +F L+ E LKG
# Sbjct: 114 -HVKKLQERGLVKAEKKGRSTILTTTEEFATYFGLDSAEPEKIKEALKG 161
#
#
# >NMB0739_2
# Length = 163
#
# Score = 63.9 bits (154), Expect = 3e-10
# Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
#
# Query: 46 MAEAIVFASTEPVSEKQLAARLPDGIN---VALAMAELQQVYSRRGVNLVRVGDAWAFRT 102
# + EA + TEP++EK + ++ + +A+L+ + R + LV + W F+
# Sbjct: 15 LIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVLAQLKTRWQDRALQLVHTQEGWRFQI 74
#
# Query: 103 AGDLAFLMSRDTVQQR--KLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGTLDT 157
# AF +QR + SRA +E LAIIAY QPVTR +IE IRGV S+ + T
# Sbjct: 75 V-QTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNVMQT 130
#
#
# >MA4332_1
# Length = 179
#
# Score = 59.7 bits (143), Expect = 6e-09
# Identities = 53/179 (29%), Positives = 92/179 (50%), Gaps = 14/179 (7%)
#
# Query: 38 LHIAEAVRMAEAIVFASTEPVS-EKQLAARLPDGINVALAMAELQQVYSRR--GVNLVRV 94
# + + + + EA +FA+ VS EK + NV+LA+ EL +VYS R G+ ++ +
# Sbjct: 1 MKLMSELEIIEAALFAAGRAVSLEKLMKITGKPKKNVSLAVQELMEVYSSRDSGIEILDL 60
#
# Query: 95 GDAWAFRTAGDLAFLMSRDTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVETSKGT 154
# G+ + + + + LM V ++LS L L++IAYHQP+ ++++ ++RG +
# Sbjct: 61 GERYVMQVKPEYSELMRE--VAPKELSAPKLRTLSMIAYHQPLLQSDLIEMRG-SGAYDH 117
#
# Query: 155 LDTLLETEWVRMRGRRKTP-GRPVTYGTTETFLDHFALEEIRDLPGMEELKGAGLLSGR 212
# + L+E +V P GR TT F D+F L+ R+ PG + K LL +
# Sbjct: 118 IKDLIERGFV-----DSVPCGRSRQLSTTPLFADYFGLK--RNDPGAIKEKIIELLKSQ 169
#
#
# >PA2402_3
# Length = 1495
#
# Score = 29.3 bits (64), Expect = 8.8
# Identities = 25/91 (27%), Positives = 45/91 (48%), Gaps = 3/91 (3%)
#
# Query: 23 DQTSAENPV-QNPAERLHIAEAVRMAEAIVFASTEPVSEKQLAARLPDGINVALAMAELQ 81
# ++ AE PV + PA+R+ A+A + + A +SE+ LA +G+ + +
# Sbjct: 195 ERLGAEQPVLELPADRVRPAQASGRGQRLDMALPVSLSEELLACARREGVTPFMLLLASF 254
#
# Query: 82 QVYSRR--GVNLVRVGDAWAFRTAGDLAFLM 110
# QV +R G + +RVG A R ++ L+
# Sbjct: 255 QVLLKRYSGQSDIRVGVPIANRNRAEVERLI 285
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.315 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,156,699
Number of Sequences: 192987
Number of extensions: 1125305
Number of successful extensions: 3340
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3262
Number of HSP's gapped (non-prelim): 67
length of query: 254
length of database: 59,019,183
effective HSP length: 107
effective length of query: 147
effective length of database: 38,369,574
effective search space: 5640327378
effective search space used: 5640327378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
S2: 64 (29.3 bits)