Handout     NAR 2006 Paper     NAR 2002 Paper     FAQ     MIAME     Email GEO  
   NCBI > GEO > Accession Display Not logged in | Login
GEO help: Mouse over screen elements for information.
Scope:    Format:    Amount:   GEO accession:    Go
Sample GSM420 Query DataSets for GSM420
Status Public on Jul 19, 2001
Title Renal cell carcinoma: rccc-47, tumor 1 (part 1 of 2)
Sample type RNA
 
Source Name renal clear cell carcinoma (primary tumor)
Organism(s) Homo sapiens
Extracted molecule total RNA
 
Description clinical.stage=IV
grade.of.malignancy=2
type=clearcell
tumor.site=kidney
multiplefoci=FALSE
survival.months=8
died=TRUE
tumorsize.cm=5
sex=f
age=55
RNA=poly-A+
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice) and foreground/background ratio
Keywords = renal clear cell carcinoma
Keywords = kidney
Lot batch = batch=ReImage3_nov99 filter=3625211 reuse=4 date=22-Aug-2000
 
Submission date Jul 19, 2001
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL9
Series (1)
GSE3 Renal Cell Carcinoma Differential Expression

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-SIGNAL_BKD

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 178846 246016 -67170
2 372219 246016 126203
3 287214 246016 41198
4 293264 246016 47248
5 189381 246016 -56635
6 453947 246016 207931
7 279828 246016 33812
8 384269 246016 138253
9 133904 246016 -112112
10 383999 246016 137983
11 227493 246016 -18523
12 175395 246016 -70621
13 355147 246016 109131
14 87051 246016 -158965
15 173387 246016 -72629
16 119259 246016 -126757
17 576172 238144 338028
18 327728 238144 89584
19 223931 238144 -14213
20 251190 238144 13046

Total number of rows: 36864

Table truncated, full table size 970 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Section 508 |
NCBI Home NCBI Search NCBI SiteMap