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List of URLs
- PDB files:
- Molecules'R'Us -
molbio.info.nih.gov
- NCBI -
www.ncbi.nlm.nih.gov
- Protein Data Bank -
www.rcsb.org
- Display programs:
- Rasmol -
www.openrasmol.org
- Swiss PDB Viewer - www.expasy.ch/spdbv/
- WebLab
Viewer - molsim.vei.co.uk/weblab/download.html
- Molscript -
www.avatar.se/molscript
- Raster3D - www.bmsc.washington.edu/raster3d/
- Ribbons - sgce.cbse.uab.edu/ribbons
- biowulf.nih.gov/povray.html
- Movie viewing programs:
- Quicktime -
www.quicktime.com
- RealPlayer - www.real.com
- MPEG.ORG - www.mpeg.org
- Morphing
- BioMolecular
Morphing Tutorial at the Uppsala Software Factory - alpha2.bmc.uu.se/usf/mol_morph.html
- Izrailev et al Biophys J 1999 77:1753-68. Molecular Dynamics
Simulation of a subunit motion in cytochrome BC1 complex.
- Vonrhein et al Structure 3(5),483-490. Movie of the structural
changes during a catalytic cycle of nucleoside monophosphate kinases.
- Young et al, Cell 105:115-126 (2001). Targeted molecular dynamics
used to generate an animation of the activation loop of a Src family
kinase.
- Database of
Molecular Movements - bioinfo.mbb.yale.edu/MolMovDB/
- Webservers:
- Indie -
Molecular Movies - molbio.info.nih.gov/structbio/indie.html
- Indie -
Morph - molbio.info.nih.gov/structbio/indie_morph.html
- Yale Morph
Server - bioinfo.mbb.yale.edu/MolMovDB/morph/
- MolRay
- portray.bmc.uu.se/cgi-bin/markh/molray.pl
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