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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs3181795          
refSNP ID: rs3181795
Organism:human (Homo sapiens)
Molecule Type:cDNA
Created/Updated in build:105/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:C
Clinical Association:unknown
HGVS Names
NM_004106.1:c.*229C>T
NT_004487.18:g.11679317C>T
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss4403656 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs3181795 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss4403656LEE|e15386fwd/BC/Tattctagtctcactctcttgtcccacccttttctcttccccattcccaactccagctaaa04/26/0210/10/03105cDNAunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs3181795|allelePos=51|totalLen=101|taxid=9606|snpclass=1|alleles='C/T'|mol=cDNA|build=105
 TGCTGTTTAC GGATATTTAT ATTCTAGTCT CACTCTCTTG TCCCACCCTT
 Y
 TTCTCTTCCC CATTCCCAAC TCCAGCTAAA ATATGGGAAG GGAGAACCCC

  GeneView back to top
GeneView via analysis of contig annotation: FCER1G Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label
Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_004487->NM_004106
function
"
Group
label
Contig-->mRNA-->ProteinContig
position
mRNA
orientation
mRNA
pos
FunctiondbSNP
allele
Protein
residue
Codon
pos
Amino acid
pos
referenceNT_004487->NM_004106->11679317forward5153' UTR

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs3181795 maps exactly once on NCBI human chromosome 1
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
1NW_001838531.2220545132545912minusGalt_assembly_8HuRefHuRefview50
1NW_925683.111292940134256114plusCalt_assembly_1CeleraCeleraview50
1NT_004487.1811679317159455586plusCref_assemblyreferencereferenceview50

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AI192567 Hs.743
dbSNP Blast Analysis
NCBI RefSeq NM (mRNA):GenBank HTGS Finished:GenBank HTGS Draft:GenBank STS:GenBank mRNA:
NM_004106.1 AL590714.27 AL590651.4 G06422.1 M33195.1
UniGene Cluster ID
433300

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .