Reference SNP(refSNP) Cluster Report: rs8022282

Reference SNP(refSNP) Cluster Report: rs8022282

refSNP ID: rs8022282
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	116/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss40417693 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs8022282 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss12305883	WI_SSAHASNP\|chr14.NT_026437.10_86649182	fwd/B	C/T	cctggaaatgtttaatgagttgcttgaaga	gtgtgtgctaatggtgtgagagtgtgaaac	07/04/03	10/10/03	116	Genomic	unknown
ss21225079	SSAHASNP\|WGSA-200403-chr14.chr14.NT_026437.10_86649182	fwd/B	C/T	cctggaaatgtttaatgagttgcttgaaga	gtgtgtgctaatggtgtgagagtgtgaaac	03/19/04	03/19/04	121	Genomic	unknown
ss40417693	ABI\|hCV29283934	fwd/B	C/T	cctggaaatgtttaatgagttgcttgaaga	gtgtgtgctaatggtgtgagagtgtgaaac	07/17/05	07/17/05	126	Genomic	unknown
ss78775614	HGSV\|Cor12878_SNV_20070510.chr14_105818551	fwd/B	C/T	cctggaaatgtttaatgagttgcttgaaga	gtgtgtgctaatggtgtgagagtgtgaaac	10/17/07	10/20/07	129	Genomic	unknown
ss90073828	BCMHGSC_JDW\|JWB-0823806	fwd/B	C/T	cctggaaatgtttaatgagttgcttgaaga	gtgtgtgctaatggtgtgagagtgtgaaac	02/26/08	02/29/08	129	Genomic	unknown

Fasta sequence (Legend)

 TTGTCTTAGT TTCTGAATTT TATTTAGAAA TCAGATACTA AGCGTTAGAA TGTAAAAATT
 GAGAAAATGA TATTATTCTG ACCTCGTTAA CAAAAAACAT GAAGAATTAC AAAAAATAAA
 CCCCTCACCA TATCTGAGTT GATGTCACAG AGAAAAAAAT CCCTGAAATA TGAGAAAATA
 GGGGCCCGCA GAGAGAACTA GGGTGCGTTT ATTAGAGTAC CTGGGGCAGG TGCCACTCAT
 GGCATGGTAT TGAAGATAGG AAAAAGCTAA CCTGGAAATG TTTAATGAGT TGCTTGAAGA
 Y
 GTGTGTGCTA ATGGTGTGAG AGTGTGAAAC TCCTGGCACT TGCAGGCTTT TCCTACAGAA
 TTGGGGAAAT CCCCAGACAA CTCACCCACC TGCTGTCCTG TGGTGTTGAC TGGGGAGGAA
 GAACAGTAGC TCCGTTCAAT GCTGAATCCC CCTTCATTAT ATGCAGGAGA CATTTATTAA
 ATCTTGTGTC CTGTGGGCAC TGGTAGAATC AACTAGAACA CAAGGAAACA GAGGACATCA
 GGGAAACTCT ACCCAGAATC ACCTCCCGTC TGTTTCCTGA GGAATGAAAT CCAGAATCTG

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs8022282 maps exactly once on NCBI human chromosome 14

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
14	NW_925561.1	53432531	86678001	plus	C	alt_assembly_1	Celera	Celera	view	300
14	NW_001838121.1	589902	86888497	plus	T	alt_assembly_8	HuRef	HuRef	view	300
14	NT_026437.11	87748551	105818551	plus	C	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_026437

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .