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GEO accession:
Sample GSM117112
Query DataSets for GSM117112
Status
Public on Sep 30, 2006
Title
NA18981_Nsp_COMM
Sample type
genomic
Source Name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism(s)
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA18981
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18981
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
18.895
0.043165
0.000000
SNP_A-1780618
AA
0.023438
7.528
0.911706
0.894057
SNP_A-1780632
AA
0.007813
19.145
1.000000
0.858788
SNP_A-1780654
AA
0.007813
27.748
0.997169
0.981236
SNP_A-4192495
AB
0.023438
3.446
0.365530
0.393816
SNP_A-4192498
AB
0.480469
0.014
0.276935
0.398952
SNP_A-1780732
AB
0.265625
0.117
0.620079
0.537281
SNP_A-1780848
AB
0.007813
11.634
0.534969
0.589109
SNP_A-1780985
AB
0.187500
1.843
0.512613
0.409774
SNP_A-1781022
AB
0.078125
2.951
0.609066
0.688133
SNP_A-1781076
AB
0.023438
5.506
0.635504
0.479008
SNP_A-1781249
AA
0.007813
4.420
0.901324
0.812610
SNP_A-1781276
AA
0.062500
10.024
0.887826
0.866205
SNP_A-1781302
AA
0.007813
9.414
0.910237
0.929538
SNP_A-1781510
AA
0.007813
34.167
0.994238
0.994845
SNP_A-4192564
BB
0.039063
6.969
0.101962
0.019467
SNP_A-1781614
AB
0.023438
12.831
0.538310
0.513850
SNP_A-1781633
AB
0.007813
13.867
0.531661
0.459283
SNP_A-1781764
AB
0.007813
16.579
0.475641
0.417933
SNP_A-1781829
AA
0.007813
6.881
0.910521
0.868019
Total number of rows:
262264
Table truncated, full table size
12961 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117112.CEL.gz
42.6 Mb
(ftp)
(http)
CEL
GSM117112.raw.txt.gz
25.7 Mb
(ftp)
(http)
TXT
Raw data provided as supplementary file
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