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Library:5176 (dbEST ID)
HT0495
Library Description
| Organism: | Homo sapiens |
| Developmental stage: | Adult |
| Organ: | head_neck |
| Vector: | puc18 |
| Vector type: | Plasmid |
| Cloning site 1: | SmaI |
| Cloning site 2: | SmaI |
A mini-library was made by cloning products derived from ORESTES PCR (U.S. Letters Patent application No. 196,716 - Ludwig Institute for Cancer Research) profiles into the pUC 18 vector. Reverse transcription of tissue mRNA and cDNA amplification were performed under low stringency conditions.
Source: Simpson A.J.G., Ludwig Institute for Cancer Research
Gene Content Analysis
53 ESTs from this library were grouped into 44 UniGene entries (putative genes) [UniGene build #217, 04-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 3 | 56604 |  |
Hs.499839 | Ribosomal protein L7a, mRNA (cDNA clone MGC:23150 IMAGE:4841982). |
| 2 | 37736 | |
Hs.7744 | NDUFV1=NADH:ubiquinone oxidoreductase flavoprotein 1 subunit [human, kidney, mRNA Partial, 771 nt]. |
| 2 | 37736 | |
Hs.520640 | MRNA fragment encoding cytoplasmic actin. (isolated from cultured epidermal cells grown from human foreskin). |
| 2 | 37736 | |
Hs.495656 | Transducin (beta) like 1 protein. |
| 2 | 37736 | |
Hs.434980 | Amyloid protein (AD-AP) mRNA, 3' end. |
| 2 | 37736 | |
Hs.362806 | G protein-coupled receptor 116 (GPR116), transcript variant 1, mRNA. |
| 2 | 37736 | |
Hs.337295 | Stress-induced-phosphoprotein 1, mRNA (cDNA clone MGC:39562 IMAGE:4830381). |
| 2 | 37736 | |
Hs.127897 | Rap guanine nucleotide exchange factor (GEF) 1, mRNA (cDNA clone MGC:49019 IMAGE:6051007). |
| 1 | 18868 | |
Hs.88025 | CDNA FLJ23613 fis, clone ADKA03214. |
| 1 | 18868 | |
Hs.82890 | Defender against cell death 1, mRNA (cDNA clone MGC:13634 IMAGE:4284779). |
| 1 | 18868 | |
Hs.82071 | Msg1-related gene 1 (mrg1). |
| 1 | 18868 | |
Hs.79136 | Solute carrier family 39 (zinc transporter), member 6, mRNA (cDNA clone MGC:50406 IMAGE:5552785). |
| 1 | 18868 | |
Hs.76152 | Uterine water channel=28 kda erythrocyte integral membrane protein homolog [human, uterus, mRNA, 1340 nt]. |
| 1 | 18868 | |
Hs.716383 | DEAD-box protein p72 (P72). |
| 1 | 18868 | |
Hs.712666 | MRNA; cDNA DKFZp686K2379 (from clone DKFZp686K2379). |
| 1 | 18868 | |
Hs.710484 | PREDICTED: Homo sapiens hypothetical protein LOC100131476 (LOC100131476), mRNA. |
| 1 | 18868 | |
Hs.709313 | Beta 2- mu =beta 2-microglobulin [human, SK-MEL-33 cells, mRNA Mutant, 433 nt]. |
| 1 | 18868 | |
Hs.659631 | Transcribed locus. |
| 1 | 18868 | |
Hs.654591 | Thyroglobulin. |
| 1 | 18868 | |
Hs.646575 | 26S proteasome subunit p55. |
| 1 | 18868 | |
Hs.644639 | Eukaryotic translation elongation factor 1 alpha 1, mRNA (cDNA clone MGC:9345 IMAGE:3461588). |
| 1 | 18868 | |
Hs.636600 | Transcribed locus. |
| 1 | 18868 | |
Hs.632348 | Clone IMAGE:322502 L amino acid transporter-2 (SLC7A8). |
| 1 | 18868 | |
Hs.631827 | CDNA FLJ55060 complete cds, highly similar to Annexin A7. |
| 1 | 18868 | |
Hs.621695 | Transcribed locus, moderately similar to NP_055634.3 praja 2, RING-H2 motif containing [Homo sapiens]. |
| 1 | 18868 | |
Hs.6076 | JAB1-containing signalosome subunit 3 (SGN3). |
| 1 | 18868 | |
Hs.598958 | Hypothetical gene supported by AK128398, mRNA (cDNA clone IMAGE:5266032). |
| 1 | 18868 | |
Hs.592225 | CDNA FLJ75682 complete cds, highly similar to Homo sapiens armadillo repeat containing, X-linked 3 (ARMCX3), transcript variant 1, mRNA. |
| 1 | 18868 | |
Hs.587278 | Homo sapiens, clone IMAGE:5209126, mRNA. |
| 1 | 18868 | |
Hs.536663 | CDNA FLJ34276 fis, clone FEBRA2003520. |
| 1 | 18868 | |
Hs.521640 | XP-C repair complementing protein (p58/HHR23B). |
| 1 | 18868 | |
Hs.518265 | Transcribed locus. |
| 1 | 18868 | |
Hs.507515 | CDNA FLJ54313 complete cds, highly similar to Homo sapiens olfactomedin-like 2B (OLFML2B), mRNA. |
| 1 | 18868 | |
Hs.504237 | STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) (STT3A), mRNA. |
| 1 | 18868 | |
Hs.483993 | MRNA full length insert cDNA clone EUROIMAGE 240269. |
| 1 | 18868 | |
Hs.480364 | Methionyl aminopeptidase 1 (METAP1), mRNA. |
| 1 | 18868 | |
Hs.479693 | Arginine-rich nuclear protein. |
| 1 | 18868 | |
Hs.471851 | High density lipoprotein binding protein (vigilin), mRNA (cDNA clone IMAGE:3920936). |
| 1 | 18868 | |
Hs.465818 | Myosin IF (MYO1F), mRNA. |
| 1 | 18868 | |
Hs.461086 | Uvomorulin (put. CAM 120/80). |
| 1 | 18868 | |
Hs.446260 | Proteasome (prosome, macropain) subunit, alpha type, 6, mRNA (cDNA clone MGC:29618 IMAGE:4869452). |
| 1 | 18868 | |
Hs.435952 | CDNA FLJ53994 complete cds, highly similar to CDK5 regulatory subunit-associated protein 1. |
| 1 | 18868 | |
Hs.136947 | Autoantigen p542. |
| 1 | 18868 | |
Hs.118076 | CDNA FLJ40595 fis, clone THYMU2010705, highly similar to 40S RIBOSOMAL PROTEIN S4, X ISOFORM. |
Source: NCBI UniGene
EST Sequences
128 EST sequences from this library have been submitted to the public sequence database as of 04-Dec-2008.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- thyroid
- head and neck tumor
- adult
Source: NCBI Clone Registry
References
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al., Proc Natl Acad Sci U S A 97, 3491-3496 (2000).