Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss1473844	TSC-CSHL|TSC0090915		fwd/T	A/G	tcagaaaaataacaatcagtttcctttgac	ttcaacattgccataagaaattctcaggtc	09/07/00	04/07/04	86	Genomic			95 %
ss3245127	YUSUKE|IMS-JST055212		rev/B	C/T	gacctgagaatttcttatggcaatgttgaa	gtcaaaggaaactgattgttatttttctga	09/05/01	10/10/03	100	Genomic			unknown
ss4017545	PERLEGEN|P00226113		rev/B	C/T	gacctgagaatttcttatggcaatgttgaa	gtcaaaggaaactgattgttatttttctga	09/26/01	04/07/04	100	Genomic			unknown
ss6049823	SC_JCM|NT_011512.6_26842674		rev/B	C/T	gacctgagaatttcttatggcaatgttgaa	gtcaaaggaaactgattgttatttttctga	01/10/03	10/10/03	111	Genomic			unknown
ss12516974	WI_SSAHASNP|chr21.NT_011512.8_26929574		rev/B	C/T	gacctgagaatttcttatggcaatgttgaa	gtcaaaggaaactgattgttatttttctga	07/04/03	10/10/03	116	Genomic			unknown
ss23649002	PERLEGEN|afd0085759		rev/B	C/T	gacctgagaatttcttatggcaatgttgaa	gtcaaaggaaactgattgttatttttctga	08/10/04	09/13/04	123	Genomic			unknown
ss44253857	ABI|hCV9507147		rev/B	C/T	gacctgagaatttcttatggcaatgttgaa	gtcaaaggaaactgattgttatttttctga	07/18/05	11/03/06	126	Genomic			unknown
ss66008416	AFFY|SNP_A-1725867		rev/B	C/T	gagaatttcttatggcaatgttgaa	gtcaaaggaaactgattgttatttt	10/26/06	10/26/06	127	Genomic			unknown
ss66505216	AFFY|SNP_A-4209140		rev/B	C/T	ttatggcaatgttgaa	gtcaaaggaaactgat	10/29/06	08/14/07	127	Genomic			unknown
ss69254338	PERLEGEN|PGP00085759		rev/B	C/T	gacctgagaatttcttatggcaatgttgaa	gtcaaaggaaactgattgttatttttctga	01/30/07	08/14/07	127	Genomic			unknown
ss76327950	AFFY|AFFY_6_1M_SNP_A-4209140		rev/B	C/T	ttatggcaatgttgaa	gtcaaaggaaactgat	08/28/07	08/30/07	129	Genomic			unknown
ss91843155	BCMHGSC_JDW|JWB-1498125		rev/B	C/T	gacctgagaatttcttatggcaatgttgaa	gtcaaaggaaactgattgttatttttctga	02/26/08	03/02/08	129	Genomic			unknown

Fasta sequence   (Legend)

 GGCTCCTAGA AAAAAACAGC AGAGCACCGA ACAAGGAGAA AACCATGATA GGTGACTAAG
 GGATAAGGTA CCCTCAAAAT TCATATTTGG GTCCAGGTCT TTAGCCTAAA AACAATATCA
 GAAAAATAAC AATCAGTTTC CTTTGAC
 R
 TTCAACATTG CCATAAGAAA TTCTCAGGTC ATTTGTCAAC CCTTAATTAA TGGTAAATGT
 ATCATCTCGG AAAACCTTGC TCTCAGAATC TGAGAGGTAT AAATAAATAG AGTAAATGAT
 CCAGATTTAT ATTAACAAAG TGAACCATCC TCGTGTATGC TTATTGCATT ATGCAGACAA
 TAACCCAATA AAGAAGCAAA GTAAAGCTTC CCACTTATTA CGAATACCAT TCACCTTCCA
 TCTGAGTCAA TGTAAAATGA TTTAAATCAG GTAAACCATT TCTTAAATAT AGCAGATTTG
 CAAGTAAAAA TGCCTGCTTC TTTTTGTCTG TCCTTATGTT GATGCCTCCT CTTTTTAAAC
 ACAAGGCTCG TACGTTTGCT GCACTGGGTG GAAATCTGAC TACTACTGAG TTGGACCAAA
 TCCGAGATGG AACAGCCACC TCAGGTGATT AAACTCTGGC ATTCAAATCC AGTATCTTTC
 CCTGCATAAT TCATAGATGG CTCAAATAAA AGAAAATTTC ACGGAATAAA AGAACAGTGT
 TTTAGAGTAG AATAAAGTCA AATTAAATGG AAGGCAAGTG CAAAATAGGT GCATGCTCAA
 CCCCACAGTC TTTAAATGCC TTAAATATGG ATGCCTTTCA AATGTCATGA ATAACTTTTC
 CATAAAAGAT CACTTTTTAG AAACCAGAGG AAAACCAAAA TGAAATGTGC ACAGGGGAGA
 AAAGCAGTCA TTTTTTCGGG ATTTCTAAGA TGGGGTTTTT ATGTCAGGTT CTATTTAACG
 GAGACACAAT GAAGGTGATT TATGTCGTAG GTGAAGGTGT CTCACATCAA AAAATGATCC
 TGACAAAAAA AGAACTCGTT ATTGAAAGTA TTGAAAGTAT CTCATTTCAG AATTCTTTGG
 GACCTTTTGA CATTTTCAAT GGAGGTCTGA GGGCAGAGGG GGAATTCTCC AAGAGCTGCC
 CCATTCCCAG GGTCTGGTCT TTACAATACC AGGCAGTTGC AGTTTCACTG AATTTATACT
 GGAGAGAGTC TACACCAGGC TGGGTGTCGG GTAATCATGG TTCATGCTGC TGGGGCCAGG
 CTTCAAGGGC GCTCAAGCAC Catcaactca ttgagttctg acagcatccc tgatggggta
 gatgccctta gtgtcttcat cagcctcact ttaccaatta tatcctgagg cacagagagg
 aatttgctca agcccacgaa gtggggaaga ggcagaggca gaattcagcc cccaagaagc
 tggctctgga gcccttcctt ttagccactg tactTAAGCA TCTCTCAGTA CTGTGTGCAG
 CATACCTCCT GAGGGCCTCT ATCAGCGGGT GGGGAGTTAG GAGGCAGTAA GATTTGAGTT
 TGAAGGTAAA TGTGACTTCA TTAACACCAC AGGCTGGAGT TTTGAGAACA CTTGGCTTTT
 AGGAATAAGC AGAGGCAAAC AACAGCCAAG GGCTCAATTC CAGAAATGCT ATCAGATCTT
 TGTTAATGTT TAAATAACAT AAGCACCCAG AGCTAGGCTC TACTAAAATA AATAGCAgat
 ggatgtgtgg atggatagat gaatggatga gtagttgaat ggatgaatgg atgggtagat
 gaatggatag gtggatgaat gggtggatgg atggatggat ggatggatgg aagaatggat
 gggtggacct aaggatggat gagtgggtgg atggatggat gggtgggtgg atggatgaat
 gggtgtgtgg atgaatggat ggatggatgg atagatgaac agatgagtag ataaatgggt
 ggacggatgg gtagatgggt tgatggTCAA ATGAACAGAC AGACGGAGGT AGGTCATTCT
 CTAAGCAACC AACGAAAAGA TTCTTTTTCA TGACGTGACA GAAGTTAGCA TCTTCGGGAA
 GAGGCTGCCT TTTCTCTCCA CCCCACTCTC ATCCCCAAAT AGGAGAAGAT GTGATCTCTT
 ATCTCTGTTC TGAATGAGCT CCAACTACAA GTTCATCATC CTAAGAACAT ATGTTGCCGA
 CTGAACAGAA GTAGTCATAG TTCAAAAGTA TTATTTATTA TCATTGAACT AATAAATGAA
 ATCAAATATT CAAGAAACAG GGCACAATAA ATTGGCTTCA GAGCAAACCC TGATATGAGA
 TTCTGGAATC CTGAGCTCTT TCTTAGGAAT TTCAGAAATG ATTCAATGGT ATCATGAATA
 CCACCAATGT GTCATTCAGT TTAGATATCA ATATAGCTTA ATATGTTAGG TTATGCAGAA
 GGCAGTACAA GTTCTCCCTA AACAAATATG CATAGCCACA ATGACCAATT TAATGCAGGT
 GTAGAAAATA TGCTATTAGA ATTATCTAGA GAACTAAGGA CTAGAGTATT TGAGAGCTTC
 ATGAATATGC ATTCAGATAT CTGCGAATTT GTCAGCAGAT ATCTTCTTTG ATGTTTTCCA
 AGGGATCTAG AGAGTGAATC AGTTATGACT GCTAAGAAGA GCATGGGTTG ATACATGTGG
 GATTTTGCTA TCTTTTCTTC TGGGGAAGCA GGTAGTAGAG GGGTAGTAGA GGAAAAAGTC
 ACATCAACTT CAACCACAGC AAAACCAGAT CCATTAGATT GTCTAATAAT TCCACTCCCA
 GGAGAATGCC ACCATGAGTC TTGCAGTCTA TATCACAATA CTCAGCTCAG ATGTTCTCAT
 TCTTCTCCTG ATCATCTCCA GCCCGACACC CACCCTAATG ACTTCTCTTC CATAAAATGC
 TCCTGTTTGG GACCCTCCAC AACACCTTGT CCCCATGCAG ACACGGCATC TTCCTGGATG
 CTCACCAAAG AGTCTAGAAG AAGGACAGCC CCTTCCTCCT TCAACCGCCT GAAATCAGCG
 TCCCTGGTGC TCAAGCCAGC TCTGTGTCTA TCTACATCAT CAGAGACACT GGCCCTCCCT
 CTTTAAACAT GTTAGAGCAA TGTCCCTATT TTTATCTCCA GAGACCTCCA CAAAAGACAG
 GTGGCCCTCT GTGAGACAGT GTATTCCACT TGGATTGACC TTCACAATCA CAAATAGTAA
 CACCACTGGG CTCTTTCAAA CAAAAGACAT ATTTCCCTCA CAATGACTTC CTTCAACATT
 GTCCTTATTT CACCATTAGA ACATGCTACA TACCCATCTA AGGTTCAACA CCAGAATTCA
 CAATCACAGC CTGCATCCTT GGCCCTGTGC CAGGCAGGTG GTGCATGAGC TGGGACTCTC
 TGGAGGGGCC ACAGGA

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_011512->NM_006198 sv function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G	N
ss1473844	TSC_42_AA		72	AF					0.170	0.830
	TSC_42_C		82	AF					0.120	0.880
	TSC_42_A		83	AF					0.198	0.802
	AfAm	African American	12	IG		0.333	0.667	0.655	0.167	0.833
	Caucasian	European	22	IG		0.091	0.909	1.000	0.045	0.955
	Asian	Asian	12	IG	0.167	0.167	0.667	0.200	0.250	0.750
	CEPH	European	10	IG			1.000			1.000
	PDpanel	Global	48	IG		0.250	0.750	0.527	0.125	0.875
	CEPH		184	AF					0.040	0.960
	HapMap-CEU	European	120	IG		0.167	0.833	0.527	0.083	0.917
	HapMap-HCB	Asian	90	IG	0.067	0.244	0.689	0.200	0.189	0.811
	HapMap-JPT	Asian	90	IG	0.089	0.333	0.578	0.317	0.256	0.744
	HapMap-YRI	Sub-Saharan African	120	IG	0.033	0.300	0.667	1.000	0.183	0.817
	CHMJ	Asian	74	IG					0.176	0.811	0.014
ss23649002	AFD_EUR_PANEL	European	48	IG		0.167	0.833	0.752	0.083	0.917
	AFD_AFR_PANEL	African American	46	IG	0.043	0.348	0.609	1.000	0.217	0.783
	AFD_CHN_PANEL	Asian	46	IG		0.217	0.783	0.584	0.109	0.891
ss3245127	JBIC-allele		1312	AF					0.222	0.778
ss4017545	NCBI|NIHPDR		16	AF					0.125	0.875
ss44253857	AoD_African_American		90	AF					0.170	0.830
	AoD_Caucasian		92	AF					0.100	0.900
	AoD_Chinese		90	AF					0.080	0.920
	AoD_Japanese		90	AF					0.220	0.780
ss66505216	HapMap-CEU	European	118	GF		0.169	0.831		0.085	0.915
	HapMap-HCB	Asian	90	GF	0.067	0.267	0.667		0.200	0.800
	HapMap-JPT	Asian	90	GF	0.044	0.400	0.556		0.244	0.756
	HapMap-YRI	Sub-Saharan African	120	GF	0.033	0.300	0.667		0.183	0.817
ss69254338	HapMap-CEU	European	120	GF		0.167	0.833		0.083	0.917
	HapMap-HCB	Asian	90	GF	0.067	0.244	0.689		0.189	0.811
	HapMap-JPT	Asian	90	GF	0.089	0.333	0.578		0.256	0.744
	HapMap-YRI	Sub-Saharan African	120	GF	0.033	0.300	0.667		0.183	0.817

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN