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UniSTS:63524 Links
SHGC-24713
Homo sapiens chromosome 4, locus SYNPO2
Pan troglodytes chromosome 4, locus SYNPO2

Found by e-PCR in sequences from Homo sapiens and Pan troglodytes.

Primer InformationHelp

Forward primer:TATTCAATTGCCTCTGAGTAGTGC
Reverse primer:TTTTCTTGATGTCGTCAGATGC
PCR product size:132 (bp), Homo sapiens
GenBank Accession:G22385 R27635

   Homo sapiens
Name: SHGC-24713
Also known as: EST197680 WI-11928
Polymorphism info:  

Cross References Help
Gene GeneID:171024
 Symbol:SYNPO2
 Description:synaptopodin 2
 Position:4q26
UniGeneHs.655519 Synaptopodin 2

Mapping InformationHelp
SHGC-24713 Sequence Map: Chr 4|HuRef Map Viewer
  Position: 115680125-115680256 (bp)
 
SHGC-24713 Sequence Map: Chr 4|Celera Map Viewer
  Position: 117318417-117318548 (bp)
 
SHGC-24713 Sequence Map: Chr 4 Map Viewer
  Position: 120177306-120177437 (bp)
 
WI-11928 NCBI RH Map: Chr 4 Map Viewer
  Position: 1251.6 (cR)
  Lod score: 1.74
 
SHGC-24713 TNG Map: Chr 4 Map Viewer
  Position: 73954 (cR50000)
  Lod score: 9.9
  Reference Interval: 236
 
WI-11928 Whitehead-RH Map: Chr 4 Map Viewer
  Position: 597.9 (cR3000)
  Lod score: P1.67
 
SHGC-24713 GeneMap99-G3 Map: Chr 4 Map Viewer
  Position: 6633 (cR10000)
  Lod score: 3.00
  Reference Interval: D4S2945-D4S430
 
WI-11928 GeneMap99-GB4 Map: Chr 4 Map Viewer
  Position: 546.39 (cR3000)
  Lod score: 1.45
  Reference Interval: D4S2945-D4S430

Electronic PCR results Help
mRNA (1)
AK000774.1 210 .. 341 (132 bp)  
 
Genomic (5 of 10)[Show All Hits]
G05701.1 18 .. 149 (132 bp)  
G22385.1 18 .. 149 (132 bp)  
G33594.1 18 .. 149 (132 bp)  
AC096745.2 143704 .. 143835 (132 bp)  
CH003451.1 116383000 .. 116383131 (132 bp)  
 
ESTs (5 of 38)[Show All Hits]
Z38688.1 18 .. 149 (132 bp)  
R27635.1 18 .. 149 (132 bp)  
W52186.1 25 .. 156 (132 bp)  
W58287.1 20 .. 151 (132 bp)  
AA041202.1 286 .. 419 (134 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01050297.1 14939 .. 15070 (132 bp)  
AADC01044233.1 81303 .. 81434 (132 bp)  
AADB02007369.1 21036 .. 21167 (132 bp)  
ABBA01044700.1 41582 .. 41713 (132 bp)  
 

   Pan troglodytes
Name: SHGC-24713
Polymorphism info:  

Cross References Help
Gene GeneID:461456
 Symbol:SYNPO2
 Description:synaptopodin 2
 Position: 

Mapping InformationHelp
SHGC-24713 Sequence Map: Chr 4 Map Viewer
  Position: 122369254-122369386 (bp)

Electronic PCR results Help
RefSeq mRNA (2)
XM_001148668.1 8081 .. 8213 (133 bp)  
XM_517409.2 8124 .. 8256 (133 bp)  
 
Genomic (1)
CM000318.1 122369254 .. 122369386 (133 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01146079.1 2 .. 134 (133 bp)  
AACZ02051960.1 59491 .. 59623 (133 bp)  
 

 

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