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Library:7455 (dbEST ID)
CT0562
Library Description
| Organism: | Homo sapiens |
| Developmental stage: | Adult |
| Organ: | colon |
| Vector: | puc18 |
| Vector type: | Plasmid |
| Cloning site 1: | SmaI |
| Cloning site 2: | SmaI |
A mini-library was made by cloning products derived from ORESTES PCR (U.S. Letters Patent application No. 196,716 - Ludwig Institute for Cancer Research) profiles into the pUC 18 vector. Reverse transcription of tissue mRNA and cDNA amplification were performed under low stringency conditions.
Source: Simpson A.J.G., Ludwig Institute for Cancer Research
Gene Content Analysis
153 ESTs from this library were grouped into 125 UniGene entries (putative genes) [UniGene build #217, 04-Dec-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 6 | 39216 |  |
Hs.534679 | CDNA clone IMAGE:40131669. |
| 5 | 32680 | |
Hs.489355 | Mucin 11 (MUC11). |
| 3 | 19608 | |
Hs.534770 | Opa-interacting protein OIP3. |
| 3 | 19608 | |
Hs.371889 | Na+,K+ ATPase alpha-subunit. |
| 3 | 19608 | |
Hs.301350 | 11kd protein. |
| 3 | 19608 | |
Hs.24054 | CDNA FLJ90279 fis, clone NT2RP1000448. |
| 2 | 13072 | |
Hs.716582 | Transcribed locus, strongly similar to XP_001516585.1 PREDICTED: similar to predicted protein, partial [Ornithorhynchus anatinus]. |
| 2 | 13072 | |
Hs.706512 | Transcribed locus. |
| 2 | 13072 | |
Hs.648467 | MEN1 region clone epsilon/beta mRNA, 3' fragment, mRNA sequence. |
| 2 | 13072 | |
Hs.570791 | CDNA FLJ54122 complete cds, highly similar to Cytosol aminopeptidase (EC 3.4.11.1). |
| 2 | 13072 | |
Hs.523045 | Calcium/calmodulin-dependent protein kinase II. |
| 2 | 13072 | |
Hs.500375 | CDNA FLJ90210 fis, clone MAMMA1002091, highly similar to Ectonucleoside triphosphate diphosphohydrolase6 (EC 3.6.1.6). |
| 2 | 13072 | |
Hs.489201 | CDNA FLJ37580 fis, clone BRCOC2004036. |
| 2 | 13072 | |
Hs.449909 | Laminin-binding protein. |
| 2 | 13072 | |
Hs.446352 | HER2/neu receptor {3' region, alternatively spliced} [human, breast cancer cell line, mRNA Partial, 175 nt]. |
| 2 | 13072 | |
Hs.435120 | Kinesin-like motor protein KIF1C. |
| 2 | 13072 | |
Hs.333786 | Proteasome subunit C3. |
| 1 | 6536 |  |
Hs.95162 | Slow delayed rectifier channel subunit. |
| 1 | 6536 | |
Hs.82116 | IL-1 receptor related protein MyD88. |
| 1 | 6536 | |
Hs.79402 | MRNA variant beta for RNA polymerase II subunit 3. |
| 1 | 6536 | |
Hs.7200 | (clone Zap2) mRNA fragment. |
| 1 | 6536 | |
Hs.716394 | Transcribed locus, strongly similar to NP_009145.1 SEC63-like protein [Homo sapiens]. |
| 1 | 6536 | |
Hs.716376 | CDNA FLJ90077 fis, clone HEMBA1004454. |
| 1 | 6536 | |
Hs.715870 | Transcribed locus, strongly similar to XP_001713861.1 PREDICTED: hypothetical protein [Homo sapiens]. |
| 1 | 6536 | |
Hs.715689 | Transcribed locus, strongly similar to NP_037264.1 annexin A5 [Rattus norvegicus]. |
| 1 | 6536 | |
Hs.712598 | Karyopherin beta 3. |
| 1 | 6536 | |
Hs.710878 | Deleted in lymphocytic leukemia, 7, mRNA (cDNA clone MGC:138214 IMAGE:8327477). |
| 1 | 6536 | |
Hs.709372 | Transcribed locus, strongly similar to NP_001029041.1 voltage-dependent anion channel 1 [Gallus gallus]. |
| 1 | 6536 | |
Hs.709195 | CDNA FLJ30268 fis, clone BRACE2002635, weakly similar to SODIUM/NUCLEOSIDE COTRANSPORTER. |
| 1 | 6536 | |
Hs.708756 | Transcribed locus, moderately similar to NP_001082580.1 similar to adenosine triphosphatase [Xenopus laevis]. |
| 1 | 6536 | |
Hs.708190 | CDNA FLJ52912 complete cds. |
| 1 | 6536 | |
Hs.707569 | Full length insert cDNA clone YI58E12. |
| 1 | 6536 | |
Hs.705866 | Transcribed locus, strongly similar to XP_001151732.1 PREDICTED: RanBP-type and C3HC4-type zinc finger containing 1 isoform 2 [Pan troglodytes]. |
| 1 | 6536 | |
Hs.70573 | Histidine triad protein 3. |
| 1 | 6536 | |
Hs.702192 | Mitochondrial ribosomal protein S14, mRNA (cDNA clone MGC:13571 IMAGE:4132323). |
| 1 | 6536 | |
Hs.700839 | Transcribed locus, moderately similar to XP_800750.2 PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]. |
| 1 | 6536 | |
Hs.700338 | Damage-specific DNA binding protein 2, 48kDa, mRNA (cDNA clone MGC:1561 IMAGE:3508134). |
| 1 | 6536 | |
Hs.696428 | F-box and WD repeat domain containing 8 (FBXW8), transcript variant 1, mRNA. |
| 1 | 6536 | |
Hs.695354 | Transcribed locus, strongly similar to XP_001170717.1 PREDICTED: phosphofurin acidic cluster sorting protein 1 isoform 1 [Pan troglodytes]. |
| 1 | 6536 | |
Hs.681406 | Transcribed locus. |
| 1 | 6536 | |
Hs.677538 | CDNA FLJ44760 fis, clone BRACE3031579. |
| 1 | 6536 | |
Hs.676527 | Transcribed locus. |
| 1 | 6536 | |
Hs.673372 | Transcribed locus, strongly similar to NP_001129575.1 transmembrane protein 132C [Homo sapiens]. |
| 1 | 6536 | |
Hs.656710 | Transcribed locus. |
| 1 | 6536 | |
Hs.655123 | CDNA FLJ58264 complete cds, highly similar to Kinesin light chain 4. |
| 1 | 6536 | |
Hs.654856 | WNK lysine deficient protein kinase 2, mRNA (cDNA clone IMAGE:5735496). |
| 1 | 6536 | |
Hs.652908 | CDNA FLJ57125 complete cds. |
| 1 | 6536 | |
Hs.647051 | BCL7B protein, short isoform. |
| 1 | 6536 | |
Hs.646346 | Growth arrest-specific 6, mRNA (cDNA clone MGC:47731 IMAGE:5761791). |
| 1 | 6536 | |
Hs.645248 | Phosphoethanolamine cytidylyltransferase. |
| 1 | 6536 | |
Hs.643369 | CDNA FLJ38359 fis, clone FEBRA2000321. |
| 1 | 6536 | |
Hs.637166 | Transcribed locus. |
| 1 | 6536 | |
Hs.632177 | Lrp mRNA. |
| 1 | 6536 | |
Hs.631846 | Homo sapiens, clone IMAGE:4557161, mRNA. |
| 1 | 6536 | |
Hs.601611 | Transcribed locus, strongly similar to XP_001091874.1 PREDICTED: similar to kinesin-like 8 isoform a isoform 2 [Macaca mulatta]. |
| 1 | 6536 | |
Hs.592577 | Transcribed locus, moderately similar to NP_055699.1 splicing factor, arginine/serine-rich 14 [Homo sapiens]. |
| 1 | 6536 | |
Hs.584985 | Putative Rab5-interacting protein {clone L1-57} [human, HeLa cells, mRNA Partial, 366 nt]. |
| 1 | 6536 | |
Hs.569761 | Transcribed locus, moderately similar to NP_001029031.1 acyl-Coenzyme A dehydrogenase, very long chain isoform 2 precursor [Homo sapiens]. |
| 1 | 6536 | |
Hs.547009 | Partial putative Glycerol 3-Phosphate Permease (SLC37A1 gene), alternative 5'UTR (exons -7, -5 and 1). |
| 1 | 6536 | |
Hs.546287 | Ribosomal protein S7, mRNA (cDNA clone MGC:10268 IMAGE:3940495). |
| 1 | 6536 | |
Hs.534579 | CDNA FLJ57465 complete cds. |
| 1 | 6536 | |
Hs.529303 | Arp2/3 protein complex subunit p34-Arc (ARC34). |
| 1 | 6536 | |
Hs.525419 | CDNA FLJ55990 complete cds, highly similar to LIM domain and actin-binding protein 1. |
| 1 | 6536 | |
Hs.524871 | DNA polymerase epsilon catalytic subunit. |
| 1 | 6536 | |
Hs.524496 | Chromosome 1 open reading frame 113, mRNA (cDNA clone IMAGE:5723875). |
| 1 | 6536 | |
Hs.520640 | MRNA fragment encoding cytoplasmic actin. (isolated from cultured epidermal cells grown from human foreskin). |
| 1 | 6536 | |
Hs.515642 | Glycoprotein, synaptic 2 (GPSN2), mRNA. |
| 1 | 6536 | |
Hs.515122 | Thymidine kinase 1, soluble, mRNA (cDNA clone MGC:4394 IMAGE:2905608). |
| 1 | 6536 | |
Hs.515070 | Eukaryotic translation elongation factor 2, mRNA (cDNA clone IMAGE:2963048). |
| 1 | 6536 | |
Hs.510635 | Immunoglobulin lambda heavy chain. |
| 1 | 6536 | |
Hs.509718 | CDNA FLJ32541 fis, clone SMINT2000530. |
| 1 | 6536 | |
Hs.504613 | Parathymosin, mRNA (cDNA clone MGC:9028 IMAGE:3900998). |
| 1 | 6536 | |
Hs.497443 | Transmembrane protein 183A, mRNA (cDNA clone MGC:47784 IMAGE:5740484). |
| 1 | 6536 | |
Hs.493275 | CDNA clone IMAGE:5268560. |
| 1 | 6536 | |
Hs.482526 | Hairy cell leukemia protein 1. |
| 1 | 6536 | |
Hs.480653 | Placental anticoagulant protein (PAP). |
| 1 | 6536 | |
Hs.478854 | Transcribed locus, strongly similar to NP_004159.2 succinate dehydrogenase complex, subunit A, flavoprotein precursor [Homo sapiens]. |
| 1 | 6536 | |
Hs.477375 | Telokin. |
| 1 | 6536 | |
Hs.467408 | Transcriptional corepressor hKAP1/TIF1B. |
| 1 | 6536 | |
Hs.463638 | CDNA FLJ60775 complete cds, highly similar to Tubulin delta chain. |
| 1 | 6536 | |
Hs.459590 | Homo sapiens, clone IMAGE:5248278. |
| 1 | 6536 | |
Hs.458413 | Family with sequence similarity 86, member B1 (FAM86B1), transcript variant 1, mRNA. |
| 1 | 6536 | |
Hs.443330 | Vaccinia related kinase 3, mRNA (cDNA clone MGC:19526 IMAGE:4298578). |
| 1 | 6536 | |
Hs.440475 | Succinate dehydrogenase complex, subunit A, flavoprotein (Fp), mRNA (cDNA clone MGC:52232 IMAGE:3138724). |
| 1 | 6536 | |
Hs.434888 | Ring finger protein 44, mRNA (cDNA clone MGC:48792 IMAGE:5535911). |
| 1 | 6536 | |
Hs.433540 | CDNA FLJ61418 complete cds, highly similar to DnaJ homolog subfamily C member 8. |
| 1 | 6536 | |
Hs.430551 | KIAA0051. |
| 1 | 6536 | |
Hs.4224 | Transcribed locus. |
| 1 | 6536 | |
Hs.421257 | CDNA clone IMAGE:6732612. |
| 1 | 6536 | |
Hs.419240 | Solute carrier family 2 (facilitated glucose transporter), member 3, mRNA (cDNA clone MGC:21198 IMAGE:4396508). |
| 1 | 6536 | |
Hs.413801 | CDNA FLJ38042 fis, clone CTONG2014032. |
| 1 | 6536 | |
Hs.405880 | CDNA FLJ76504 complete cds, highly similar to Homo sapiens mitochondrial ribosomal protein S21 (MRPS21), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA. |
| 1 | 6536 | |
Hs.378103 | Ribosomal protein S5. |
| 1 | 6536 | |
Hs.375120 | C21orf88 protein form A (C21orf88). |
| 1 | 6536 | |
Hs.373793 | CDNA FLJ57205 complete cds, highly similar to Homo sapiens Rho GTPase activating protein 17 (ARHGAP17), transcript variant 1, mRNA. |
| 1 | 6536 | |
Hs.369646 | Tracheo-bronchial mucin (MUC4). |
| 1 | 6536 | |
Hs.369397 | CDNA FLJ59377 complete cds, highly similar to Transforming growth factor-beta-inducedprotein ig-h3 precursor. |
| 1 | 6536 | |
Hs.368433 | N8=tumor expression-enhanced gene [human, NCI H-69 cell line, mRNA, 2185 nt]. |
| 1 | 6536 | |
Hs.368157 | (xsr) mRNA, 290bp. |
| 1 | 6536 | |
Hs.349283 | Heterochromatin protein homologue (HP1). |
Source: NCBI UniGene
EST Sequences
349 EST sequences from this library have been submitted to the public sequence database as of 04-Dec-2008.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- intestine
- colorectal tumor
- adult
Source: NCBI Clone Registry
References
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al., Proc Natl Acad Sci U S A 97, 3491-3496 (2000).