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COG2027: DacB 
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]
Statistics
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PSSM-Id: 32210
View PSSM: COG2027
Aligned: 25 rows
Created: 7-Oct-2002
Updated: 7-Oct-2002
Structure
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Aligned Rows:
COG2027 is a member of the superfamily cl03453.
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20090817  10 LILTCLLDSLMKyprersrGDYMKSDAHESKklcylllgtiflitvcqpfagaggnsqdsplegnplpasvTEIMNDTKY 89
gi 19553893   1 MKNAWWVGS------------SVGVLIAVG----------------------------------------------AVIG 22
gi 15805212   2 RRFLLLSFLLLP--------VAAQSSTPAPP------------------------------------------AQATQPQ 31
gi 15827014   1 MNPIRWQKS----------YVVVGLAMLA---------------------------------------------FIIAAV 25
gi 15677636   1 MNFPKTAASLL---------LLLASLAAHA--------------------------------------------LDTGRI 27
gi 17545303   2 ARIIRLTRLLRLsrcavacAALLAFTAAPLAqarkparahaapaatva-------qkrqaahnpaglpanvALAFARAHI 74
gi 15640652   2 VDVIAMLFRFIPvw----lLSISGFLIASPIyaq-----------------------------------tpLTAATTKLP 42
gi 15838215   1 MKYILISMVVFVfvgcgtfCHIKDQTSKKSDassisrs--------------------------slasrldKIILSNKST 54
gi 17227550   1 ---------------------MLELLSSG---------------------------------------------LVSIWL 14
gi 16331571   4 VLLSQWKKYLDPlplqltgTGIFYLCLTTGVgaqadrlc------------------------vgdlqqklESHLQQPEL 59
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20090817  90 DHAFWGILVEDLETGEVVYQLNPEKMFIPGSTTKLYTGAAALDIIGADYRFETPIYARGnVdSSGNLNG-DLILVASGDL 168
gi 19553893  23 GGVWVNHSGFGLDHPEPMSVEMPEQ-LFSSAIDP--DALEAPDFATLEKDLTSQAADS----RLGTFVG-VARDVESGEV 94
gi 15805212  32 PAPAPSVTLEREPLPTGALAHTLAEVPRPVRTGLLVRDLNTGKVLVALDPDRPLVPAS--T-MKLVTAA-AVLYDRGGAG 107
gi 15827014  26 KAATVFTTGGHSTNGARSAVPPPRASTVKPALVPVTETAVVPSVGGLAAALASALADP----SLGSFGG-RITDAMTAKE 100
gi 15677636  28 PQNEIAVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFKTFGSNYRWATEFKSNGtV-NDGTLDG-NLYWAGSGDP 105
gi 17545303  75 PLDAVSVFVIRTGTATPILQWNADAGMNPASTMKLLTTFAGLDLLGPDFRWKTSAYADRpP-AGGVLSG-NLYLRGQGDP 152
gi 15640652  43 QGARYSLLIEDVALQQNTLELNTHLYYPPASTQKILTALAAKLELGDKFRFHTDLMRSG-------QD---WIIRFSGDP 112
gi 15838215  55 VGSLVALTVRDGKIGDVLYARNTGSRTFPASNLKLVTLYSAFSVLGSDYKFETILMTDGtQ-KKGHLSG-NLYLKEIGDP 132
gi 17227550  15 EMAGVQIKPADALDALTWQSSPGLVIAPDPNPAGINTVKEYLKGLVTTKLIAQNLAESQ---GIWLQSGpMLMANHQGTT 91
gi 16331571  60 SRAQWGIAIQPLTDSQPIYQYQADRFFIPASNQKLITTAMALQELGPNFRFTTQVYQR-----DG--GK-KVQVISSGDP 131
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20090817 169 TMGgrttpdgKIDYTDIDHSYANSIGNAILTtpdplsgLDQLAQQVSAAGIKSVSGDviIDDRLFDKINPPDSANDYTLT 248
gi 19553893  95 VWE-------QNQGTAVRPASATKILTAAVA-------LYELGREDTITTKVVEGEQ-------------PGTVVIKAG- 146
gi 15805212 108 GWW-------STELTVPAPDTGKGHVSALTL-------RGSGDPTLSVS-----------------G--TPNSLRALAEQ 154
gi 15827014 101 LWQ-------QQDDMPLVPASANKLLTAAAA-------LLTLDRQTRISTRVVAAGPnaQGPVVLVGAGDPTLSAASPDQ 166
gi 15677636 106 VFN-------QENLLDAQKQLREQGILNITG-------HLMLDHSLWGEVGSPDDFE---ADSGSPFMTPPNPTMLSAGM 168
gi 17545303 153 KLI-------PEELIKLVTDVRRAGVDELAG-------NIVLDRSYFEN-GLSDAPPl-DGDTGRAYNVAPDALLYAFKT 216
gi 15640652 113 TLT-------TADLTTLLKAMKAQSGGRIEG-------DLWLDNSVFSGYERAVGWP--WDILGVCYSAPASAINLDANC 176
gi 15838215 133 TLS-------ADDYDKLANDLAARGIRKIDG-------NLVLDDTSFDSIALCLGWM--IDDEDKYFEAQISALTFSPNA 196
gi 17227550  92 PLP-------AASLTKIATSLAAFTTFGPEH---------QFETTIATN-------------------ASVVNGVLQGD- 135
gi 16331571 132 SFD-------VDDLTAIAKGLKDRGVTAIEE-------LELVDTIAPQDYQRP-SWE--WDDLHYGYAPPVNGAILTGNQ 194
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20090817 249 pIVINDNLIDIMVKPAQPGMAAEVDWRPQTAAYAIEADVVTTDANETariEISTGGPGIINV--SGQVPAGEDTIVQ-TY 325
gi 19553893 147 -GDVTLSEEMLDDLATQLE--GQDIGTVLIDTSIWPDEGFASTWDPV---DVDAGYIADVEP--AMIEAARIGGS---EG 215
gi 15805212 155 -AHTRGIRA--VDAVRIDTLPLDATSFEATELGLAMPAVRLREWENR---PPTSAAEARRRLgaTLIAELRRVGITVaHE 228
gi 15827014 167 -STWYRGAPRISDLVEQVRRSGVTPTAVQVDTSLFTGPTMAQGWDPA---DVDNGYTAPIES--AMIDAGRIQPT---TV 237
gi 15677636 169 -VMVRAERN-AAGSTDILTDPPLPHIFAQNNLKITASQAACPSIKKL---MRASFSDNTLKL--RGNIPESCLGKPVgVR 241
gi 17545303 217 -LTFTLAPDAATGAVNVDVSPPLAQLQVDNQLHVTH--GNCGDWRSHanfDIATQADGTVRAsfDGRYAGACGERIFnVA 293
gi 15640652 177 -IQASIYTE--PQGKTRVYVPEHYPVHVQSQAISVTQSEQESLLCDL---ELTATPENHYTL--DGCLALRDKPLPL-KF 247
gi 15838215 197 -DFNAGAVIIDVSAARTGNSTTEITVLPRNNVVKMINRVVNGNTSAI----TVSRARGSNDIyvSGTVKAGDSIQEL--C 269
gi 17227550 136 -LIINGGGD-----PMFVWEEAIALGNTLNKMGIKQVKGNLVITGNF---AMNFQRHPLLAG---QMLKQSLNSK----T 199
gi 16331571 195 -VILTLTPQNLGEPLTPTWSDPIAGAQWQIINQTET--AVDPHQPPQ----V-QQIFGQRQLviTGGLPPAGETRSI-TL 265
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20090817 326 TVDDPSSFARSLLIEALERQGVKVNASVKGNNPADLlpattnyseFERVALLTSLPFSENLKLIMKVSQNMQADSLLPLM 405
gi 19553893 216 DLPRSHTPALDVAQALADRVG--ADTVDEGSAPDKT-----------VLASVESDTLDQRLARMMKDSDNVMAEGIAKEV 282
gi 15805212 229 EVTSAPAYRPYVPPPRQDEKGRPLPPDLLIPLSQRP---------EQGVASVRSGSPFPFLASTLRPSDNLRAEALLATV 299
gi 15827014 238 KSRRSRTPALDAGRELAKALGVAPDAVTIVKASSGA----------RQLAVVQSAPLVQRLSEMMDNSDNVLAECIGREV 307
gi 15677636 242 MFALDELIRQSFTNHWLLGGGRISDGIGIADTPEGA----------QTLAVAHAKPMKEILTDMNKRSDNLIARSVFLKL 311
gi 17545303 294 ALTHADFIWGGFLALWRQAGGTFRATPGLREGKVPHp--------AVLLATHYGPTLAEVVHDIDKYSNNVMARQLFLTI 365
gi 15640652 248 AVQDTGIYTQRVVYRLLSQLNIELKGKIKVGKANTKq--------AQKIASHHSQPLPVLLKTMLQESDNLIADTLTKAL 319
gi 15838215 270 SVWMPSLIVSDIFQSALKRHGIEVAGHAVVGQATPMq--------ALMLVRRQSAPLESLVIPLMKLSNNTMAEIFLKSI 341
gi 17227550 200 -WTRPANYIHSIMPKGTPKPQVAINGTIKFAAQANPk--------QTLLVRHRSLPLKQLIKEMNVYSNNEMAQMLAEAV 270
gi 16331571 266 AVADPQQYFLASLQQKLAEQGISVSTSIVSANTKAIa--------PAPLLALTSPPLWTLIKTVNQDSNNLYAEALLNAI 337
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20090817 406 AVK----EGKRSFWDGlIIERSFLEKTGIDLNAVSISDGRGNSPADYMTPRTTVDLLRYMSSGNDSQV------------ 469
gi 19553893 283 AASk--dLATDSASTS-KMTLEILKDKGFDLSGVSIVDNSGLSFDNLITPRLLDDILTRAATEPELSS------------ 347
gi 15805212 300 AVRpg-eTGTLKSALK--REQAILQRLGLDLSDVVLEDGSGLGRGNRLTPRLLTGLLRELYTLPYPTAaqygrelppaly 376
gi 15827014 308 AAAin-rPLSFAGAVD-AVTNRLG-TAHIDTTGAALVDSSGLSVNNRLTAKTLGGAVQAAAGPDQPVLr----------- 373
gi 15677636 312 GGDgk-lPAVSEQAAS-AVRRELA-VSGIDVADLVLENGSGLSRKERVTARMMAQMLETAYFSPFAQD------------ 376
gi 17545303 366 GAEigrkPASVQQSAD-IISRWLA-RQNLSMPELVLENGSGLSRIERISARNLGRLLQQADANPNGAI------------ 431
gi 15640652 320 GHRfysqPGSFTNGTQ-AIKQIFYSRTGISLEDTQLADGSGLSRNNRMRPQVMLETLRYLYQHEAELG------------ 386
gi 15838215 342 GRKsl-nQGSASAGIQ--ATLGVLAMDGINSESLVQVDGSDLSRYNLIASRILTDILLAARKKPWFAA------------ 406
gi 17227550 271 GGH-----AVVQAKAA-------K-LARVPETEIQLINGSGLGPENRISPRAACAMLMALQHEAAAAQl----------- 326
gi 16331571 338 QPP-----S---QATD---WQSYVERLGLATTTVRLRDGSGLSRQDLVTPQALVQLLINQTQKSTGTI------------ 394
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20090817 470 ------YRDALPILG-----VDGSLATSv-------GPESPAKGKVQAKTGTTAKydvvndrlilcSQALGGYMNTSEDR 531
gi 19553893 348 ------LLTSLPIAH-----GTGTLEDR--------YDGLSGAGWVRAKTGTLTD-----------TSALAGVVTSESGR 397
gi 15805212 377 harhnaFAELLPQAG-----TGEDVPDHdgrggtlaRRLVGTGLDVRAKTGTLPG-----------VSALAGYLTAKSGR 440
gi 15827014 374 -----aLLDLLPIAG-----GSGTLSDRfl----ssATHQGPAGWLRAKTGSLTA-----------INSLVGVVTDRSGR 428
gi 15677636 377 ------FIDTLPIAG-----TDGTLRNR----------FKQSGGLLRLKTGTLNN-----------VRALAGYWLGDKPM 424
gi 17545303 432 ------LRDALPVVG-----VDGTMRNR--------LTRAGVAGNAEIKTGTLND-----------VRAIAGYVEGEGGQ 481
gi 15640652 387 ------LIAMLPSAG-----ESGTLQYRr------sMRAPQISGQIKAKSGSLYG-----------TYNMAGFVMDENQR 438
gi 15838215 407 ------FYASLPVAGqpdrlIGGTLRNR--------MRGTAAEGKVIAKTGSLTG-----------ISSLSGYVTAADEY 461
gi 17227550 327 -----nLADLFPIAGf---dKRGTMHSR------------HLPMATVMKTGTLRD-----------VSALAGVVPTRNRG 375
gi 16331571 395 ------YQQSLAVAG-----RSGTLERS--------FADTPLVGKMRGKTGTLTG-----------VVSLTGYVENQQWG 444
                       570       580       590       600
                ....*....|....*....|....*....|....*....|.
gi 20090817 532 -KLAFAIYVNNVPVKDVk---EMKQVSNDLGSICEAIYEEN 568
gi 19553893 398 -VFTFAFVSNGSAIVP------AREALDEMASILRDF---- 427
gi 15805212 441 -PLAFAVLMNGPEDSPi---lTLRALQDQAVRDIAAAF--- 474
gi 15827014 429 -VLTFAFISN--DAGP-----TGRAAMDELATRLWMCGCAT 461
gi 15677636 425 -AVVVIINSGRAVSLLPdl-dNFVANNIISGGDGWLDAKLM 463
gi 17545303 482 -RYVVVSMINHPSAGG------GQAAHDALLQWIYQGAPQ- 514
gi 15640652 439 pKTLFVQFVTDYFPPRSnpevAVEPPIIQFETQLYQELIQF 479
gi 15838215 462 -PLVFSILLNNLIISA-------DQTEDTLAETLASCRCGF 494
gi 17227550 376 -LVWFAIINRGPQIGAFr---QQQDKLLQRLVQQLQVAPST 412
gi 16331571 445 -TVAFSFMVNNSDLGAS----VLREAMKQMVLWTAQVEKCQ 480
Citing CDD
Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35: D237-40
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