proteins
| 17 proteins |
S | COG2832 | Uncharacterized protein conserved in bacteria | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Escherichia coli O157:H7 EDL933 (Enterobacteriales | Gammaproteobacteria) | ||||
| ZybaN | ||||
125 letters 0
0 671 = |||ybaN (125) = 0
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ZybaN
(125 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
ybaN 263 6e-71
ZybaN 263 6e-71
ECs0521 263 6e-71
STM0482 224 3e-59
VC1052 117 5e-27
NMA0754 98 3e-21
NMB0571 96 1e-20
AGc4462 96 2e-20
PA1439 89 2e-18
SP1261 86 2e-17
SA0161 83 9e-17
FN2099 82 2e-16
PM0679 75 3e-14
BMEI1990 69 2e-12
DR1457 61 4e-10
AGc121 31 0.51
APE1056 30 0.86
Cgl0558 29 1.5
CC3421 29 1.9
CAC0080 29 1.9
AF0347 29 1.9
BS_ydeD 28 3.3
sll0528_1 27 5.6
STM2758_1 27 7.3
Z3235m_1 27 7.3
yegE_1 27 7.3
AGc1973 27 9.6
# >ybaN
# Length = 125
#
# Score = 263 bits (671), Expect = 6e-71
# Identities = 125/125 (100%), Positives = 125/125 (100%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL
# Sbjct: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
# RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE
# Sbjct: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
#
# Query: 121 KQEKH 125
# KQEKH
# Sbjct: 121 KQEKH 125
#
#
# >ZybaN
# Length = 125
#
# Score = 263 bits (671), Expect = 6e-71
# Identities = 125/125 (100%), Positives = 125/125 (100%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL
# Sbjct: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
# RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE
# Sbjct: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
#
# Query: 121 KQEKH 125
# KQEKH
# Sbjct: 121 KQEKH 125
#
#
# >ECs0521
# Length = 125
#
# Score = 263 bits (671), Expect = 6e-71
# Identities = 125/125 (100%), Positives = 125/125 (100%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL
# Sbjct: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
# RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE
# Sbjct: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
#
# Query: 121 KQEKH 125
# KQEKH
# Sbjct: 121 KQEKH 125
#
#
# >STM0482
# Length = 125
#
# Score = 224 bits (570), Expect = 3e-59
# Identities = 105/124 (84%), Positives = 112/124 (89%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# MQR ILIIIGWLAVVLGTLGVVLP+LPTTPFILLAAWCFARSSPRFHAWLLYRSWFG YL
# Sbjct: 1 MQRTILIIIGWLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGGYL 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
# R WQ++ AMP G KPRAI LILLTF ISLW V M WVR++LLVILACLL +MWRIPVIDE
# Sbjct: 61 RHWQRYRAMPPGAKPRAIALILLTFGISLWLVNMMWVRVLLLVILACLLIFMWRIPVIDE 120
#
# Query: 121 KQEK 124
# KQ+K
# Sbjct: 121 KQQK 124
#
#
# >VC1052
# Length = 132
#
# Score = 117 bits (292), Expect = 5e-27
# Identities = 55/128 (42%), Positives = 84/128 (64%), Gaps = 3/128 (2%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# + R + +IG ++ LG LG+ LP+LPTTPFILL++ CF RSSPRF+ WL + FG +
# Sbjct: 5 LPRFLFSVIGITSLCLGILGIFLPLLPTTPFILLSSACFLRSSPRFYRWLNQHATFGPMI 64
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIP---V 117
# + WQ+H A+ + VK RA L I+L+FA S+W V W+++ L + L L+ + R+P +
# Sbjct: 65 QNWQQHGAVSKAVKKRATLFIVLSFAFSIWMVPWLWLKVALFIWLVLLITWFIRLPTHEL 124
#
# Query: 118 IDEKQEKH 125
# + +QE H
# Sbjct: 125 VANQQENH 132
#
#
# >NMA0754
# Length = 119
#
# Score = 98.2 bits (243), Expect = 3e-21
# Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# M R +LI G ++++LG +G+ LP+LPTTPF+LL+A C+A++SPRFH WL +FG +
# Sbjct: 1 MIRYLLIACGCISLLLGIIGIFLPLLPTTPFVLLSAACWAKASPRFHRWLHRHRYFGPMV 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLW-FVQMPWVRIMLLVILACLLFYMWRIP 116
# W+++ A+PR K AI ++ + I W F Q WV + V + + +MWR P
# Sbjct: 61 HNWEQNGAVPRKAKIFAISMMTASCLIMFWQFPQRWWVGAVSSVFCSLVAIWMWRRP 117
#
#
# >NMB0571
# Length = 119
#
# Score = 95.9 bits (237), Expect = 1e-20
# Identities = 47/117 (40%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# M R +LI G ++++LG +G+ LP+LPTTPF+LL+A C+A++SPRF+ WL +FG +
# Sbjct: 1 MIRYLLIACGCISLLLGIIGIFLPLLPTTPFVLLSAACWAKASPRFYRWLHRHRYFGPMV 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLW-FVQMPWVRIMLLVILACLLFYMWRIP 116
# W+++ A+PR K AI ++ + I W F Q WV + V + + +MWR P
# Sbjct: 61 HNWEQNGAVPRKAKIFAISMMTASCLIMFWQFPQRWWVGAVSSVFCSLVAIWMWRRP 117
#
#
# >AGc4462
# Length = 120
#
# Score = 95.5 bits (236), Expect = 2e-20
# Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# R++ + +GWL V G +G LPVLPTTPF+LLA WCF+RSSP+ AWLL FG LR
# Sbjct: 4 RLLYLCLGWLMVATGIVGAFLPVLPTTPFLLLALWCFSRSSPKLEAWLLAHPRFGPSLRR 63
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMP---WVRIMLLVILACLLFYMWR 114
# W++ A+ R K A+ + +++A + WF+ P I+ V+L LF + R
# Sbjct: 64 WRERGAIARKAKIAALSAMTVSYA-AFWFLSEPPPLRATIVAAVMLGSALFIVTR 117
#
#
# >PA1439
# Length = 135
#
# Score = 88.6 bits (218), Expect = 2e-18
# Identities = 46/112 (41%), Positives = 67/112 (59%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# R L +G+L+V LG +G+ LPVLPTTPF+LLAA CF RSSPRF+ WL+ G ++R
# Sbjct: 15 RYSLQAVGFLSVALGVIGIFLPVLPTTPFLLLAAACFMRSSPRFYHWLVGHPRLGPWIRD 74
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWR 114
# + +P K AI L+ + A+S + V+ PW + +L + Y+ R
# Sbjct: 75 YLDGEGIPLKGKVYAIGLMWASIALSCYLVRRPWAQGFMLTSAVLVSIYILR 126
#
#
# >SP1261
# Length = 119
#
# Score = 85.5 bits (210), Expect = 2e-17
# Identities = 42/113 (37%), Positives = 74/113 (65%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# RII +IIG+L++ L +GVVLP+LPTTPF+LL+ CF+RSS RF WL + + +Y+
# Sbjct: 2 RIIYLIIGFLSLTLAIVGVVLPLLPTTPFLLLSIACFSRSSKRFEDWLYHTKLYQAYVAD 61
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRI 115
# +++ ++ R K + I+ I + IS++F + V+I L + + +Y++++
# Sbjct: 62 FRETKSIARERKKKIIVSIYVLMGISIYFAPLLPVKIGLGALTIFITYYLFKV 114
#
#
# >SA0161
# Length = 127
#
# Score = 83.2 bits (204), Expect = 9e-17
# Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# R+ILI+IG + LG G VLP+LPTTPF+L+A +CFARSS RF+ WL+ + + Y+
# Sbjct: 2 RLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVEN 61
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVR----IMLLVILACLLFYMWRIPVI 118
# + H K + ++ + + S++ V + VR IM+++ A L ++ +P
# Sbjct: 62 FYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKS 121
#
# Query: 119 DEKQEK 124
# + K E+
# Sbjct: 122 NHKIEE 127
#
#
# >FN2099
# Length = 125
#
# Score = 82.0 bits (201), Expect = 2e-16
# Identities = 43/104 (41%), Positives = 64/104 (61%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# +++ I I +G LA+ LG +GV LPV+PT PF+L+A +CF RSS ++H +L +FG L
# Sbjct: 4 LKKKIYICVGLLALGLGIIGVFLPVMPTVPFLLVALFCFERSSKKYHDMILNNKYFGKIL 63
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVI 104
# R + + + VK +AIL + S + VQ +RIML VI
# Sbjct: 64 RDYYEGKGLTTSVKIKAILFLTCGIGFSFYKVQHLHLRIMLAVI 107
#
#
# >PM0679
# Length = 120
#
# Score = 74.7 bits (182), Expect = 3e-14
# Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# + I I++G++ + LG +G++LP+LP TPF+LL + FA+ S R H W L W+ +L+
# Sbjct: 2 KAIYILLGFIFLGLGIVGIILPLLPATPFLLLTLFFFAKGSDRLHHWFLQTPWYNKHLKS 61
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWV---RIMLLVILACLLFYMWRIPVID 119
# +++ A+ + K + +L+ T +S+ F P V I++LV+L F+ + I +
# Sbjct: 62 FKEERALTQ--KSKFWILLFATIMLSIGFYFTPSVVGRTIIVLVLLTKYWFFFFWIKTVK 119
#
# Query: 120 E 120
# +
# Sbjct: 120 Q 120
#
#
# >BMEI1990
# Length = 146
#
# Score = 68.9 bits (167), Expect = 2e-12
# Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
#
# Query: 2 QRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLR 61
# +R++ + +G+L + LG +G LPV+PTT F++LAAW FARSSP A LL FG +
# Sbjct: 29 KRMLYLCLGFLMLALGIIGAFLPVMPTTIFVILAAWFFARSSPVLEARLLADPRFGPLVI 88
#
# Query: 62 FWQKHHAMPRGVKPRAILLILLTFAIS---LWFVQMPWVRIMLLVILACL 108
# W++ A+P PRA L L A W+ P + + +V + L
# Sbjct: 89 KWRERGAIP----PRAKLYACLGMAFGYGFFWWGARPGLALAAIVAVFML 134
#
#
# >DR1457
# Length = 144
#
# Score = 61.2 bits (147), Expect = 4e-10
# Identities = 36/103 (34%), Positives = 56/103 (53%), Gaps = 5/103 (4%)
#
# Query: 7 IIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKH 66
# + +G++ LG LG++LP LP T F +LAA FA+ PR+ AWLL R G ++ +++
# Sbjct: 30 VAVGFMLTGLGFLGLILPGLPGTVFFVLAAAAFAKGDPRWEAWLLSRPVVGQMVQDYREG 89
#
# Query: 67 HAMPRGVKPRAILLILLTFAISLWFV-----QMPWVRIMLLVI 104
# MP K A I++ + SL + Q+ WV + L I
# Sbjct: 90 KGMPLRAKWIACACIVVAVSFSLTRIPVLVGQVTWVLVALFGI 132
#
#
# >AGc121
# Length = 314
#
# Score = 30.8 bits (68), Expect = 0.51
# Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
#
# Query: 5 ILIIIGWLAVVLGTL----GVVLP------VLPTTPFILLAAWCFARSSPRFHAWLLYRS 54
# ILI+IGWL V G L G +L +PT F LA F +SP F W+ Y
# Sbjct: 13 ILILIGWLTVKAGLLRADAGDILSDFVFKIAVPTLIFRTLAEANFHGASP-FRLWITY-- 69
#
# Query: 55 WFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLW----FVQMPWV 97
# F W H + R V + + + ++ S + F+ +P V
# Sbjct: 70 -FAGVAVTWAFGHIVTRYVFKQDVRIAVIAGISSAFANNIFIGLPLV 115
#
#
# >APE1056
# Length = 203
#
# Score = 30.0 bits (66), Expect = 0.86
# Identities = 17/37 (45%), Positives = 21/37 (55%), Gaps = 2/37 (5%)
#
# Query: 10 GWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRF 46
# GW + G +GVV PVLP ++ AA A S PRF
# Sbjct: 43 GW--ELRGCIGVVRPVLPLVEAVVTAAVDAASSDPRF 77
#
#
# >Cgl0558
# Length = 142
#
# Score = 29.3 bits (64), Expect = 1.5
# Identities = 24/101 (23%), Positives = 42/101 (40%), Gaps = 17/101 (16%)
#
# Query: 7 IIIGWLAVVLGTLGVVLPVLP-TTPFI------LLAAWCFARSSPRFHAWLLYRSWFGSY 59
# +I+GWL ++G + + LP T FI L W + H + + +W+G
# Sbjct: 36 LILGWLVTIIGLITIPLPGQGWLTTFIGVGILSLELKWAKNLLAWGVHQYDRFFTWYG-- 93
#
# Query: 60 LRFWQKHHAMPRGVKPRAILLILLTFAISLWFV----QMPW 96
# +K + ILLI + F ++ W + +PW
# Sbjct: 94 ----KKSFRFRMAMLALMILLIWVVFIVTFWLMWHAGTIPW 130
#
#
# >CC3421
# Length = 328
#
# Score = 28.9 bits (63), Expect = 1.9
# Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
#
# Query: 4 IILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAW 37
# +ILI +GW A++LG L + L + PF+ W
# Sbjct: 143 LILICLGWTAILLGVLSLAL--VAAYPFMKRITW 174
#
#
# >CAC0080
# Length = 447
#
# Score = 28.9 bits (63), Expect = 1.9
# Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
#
# Query: 76 RAILLILLTFAISLWFVQMPW--VRIMLLVILACLLFYMWRIPVI 118
# R + +I++T ISL F+ + W V +M +I+ C+ Y+ V+
# Sbjct: 30 RLVGMIVITEIISLIFLMLGWQQVTVMAYLIIPCIFMYLQTSDVV 74
#
#
# >AF0347
# Length = 319
#
# Score = 28.9 bits (63), Expect = 1.9
# Identities = 12/24 (50%), Positives = 15/24 (62%)
#
# Query: 9 IGWLAVVLGTLGVVLPVLPTTPFI 32
# IGW A +LGT GV + LP P +
# Sbjct: 8 IGWFATILGTGGVAIASLPYFPVL 31
#
#
# >BS_ydeD
# Length = 319
#
# Score = 28.1 bits (61), Expect = 3.3
# Identities = 17/59 (28%), Positives = 31/59 (51%), Gaps = 10/59 (16%)
#
# Query: 6 LIIIGWLAVVLG-TLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFW 63
# L+++GW ++ G LG + P P+ L F R + +A++L+ FG+ + FW
# Sbjct: 190 LVVVGWAMIIGGFALGFIHP-----PWQL----DFQRLTAEAYAYILFVILFGTMIAFW 239
#
#
# >sll0528_1
# Length = 251
#
# Score = 27.3 bits (59), Expect = 5.6
# Identities = 13/29 (44%), Positives = 19/29 (64%), Gaps = 2/29 (6%)
#
# Query: 10 GWLAVVLGTLGVVLPVLPTTPF-ILLAAW 37
# GWLA+ +G+LG +L +LP F +L W
# Sbjct: 202 GWLAIAIGSLG-ILNILPIGSFWTILIGW 229
#
#
# >STM2758_1
# Length = 430
#
# Score = 26.9 bits (58), Expect = 7.3
# Identities = 18/63 (28%), Positives = 25/63 (39%)
#
# Query: 33 LLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFV 92
# LL W F L+ +FG R + P G+ A+ +L TFAI W +
# Sbjct: 348 LLMEWFSVHIGLSFSGGLIDYLFFGVLPRAPHWYMVFPVGLVMGAVYYVLFTFAIRRWNL 407
#
# Query: 93 QMP 95
# P
# Sbjct: 408 LTP 410
#
#
# >Z3235m_1
# Length = 300
#
# Score = 26.9 bits (58), Expect = 7.3
# Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
#
# Query: 11 WLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSP--RFHAWLLYRSWFGSY----LRFWQ 64
# WL + LG+ +V P+L +LL P F W+L S G+ L
# Sbjct: 124 WLRLALGS-AIVPPLLGGVLVVLLTPG----DDPIRAFLIWVLSES-IGALALVPLGLLF 177
#
# Query: 65 KHHAMPRGVKPRAILLILLTFAISL---W--FVQMPWVRIMLLVIL 105
# K H + R PR + LLT AI+L W + +PW ++V+L
# Sbjct: 178 KPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLL 223
#
#
# >yegE_1
# Length = 300
#
# Score = 26.9 bits (58), Expect = 7.3
# Identities = 31/104 (29%), Positives = 47/104 (44%), Gaps = 13/104 (12%)
#
# Query: 11 WLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSY----LRFWQKH 66
# WL + LG+ +V P+L +LL + F W+L S G+ L K
# Sbjct: 124 WLRLALGS-AIVPPLLGGVLVVLLTPGDDPLRA--FLIWVLSES-IGALALVPLGLLFKP 179
#
# Query: 67 HAMPRGVKPRAILLILLTFAISL---W--FVQMPWVRIMLLVIL 105
# H + R PR + LLT AI+L W + +PW ++V+L
# Sbjct: 180 HYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLL 223
#
#
# >AGc1973
# Length = 348
#
# Score = 26.6 bits (57), Expect = 9.6
# Identities = 15/42 (35%), Positives = 20/42 (46%), Gaps = 1/42 (2%)
#
# Query: 77 AILLILLTFAISLWFV-QMPWVRIMLLVILACLLFYMWRIPV 117
# AI L+ L AI W +PWV I L V F+ +P+
# Sbjct: 187 AICLVGLAVAILTWHAGSLPWVSIALTVSWGFYAFFRKTLPI 228
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.337 0.147 0.526
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,255,900
Number of Sequences: 192987
Number of extensions: 579128
Number of successful extensions: 3243
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3195
Number of HSP's gapped (non-prelim): 79
length of query: 125
length of database: 59,019,183
effective HSP length: 101
effective length of query: 24
effective length of database: 39,527,496
effective search space: 948659904
effective search space used: 948659904
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)