proteins
| 17 proteins |
S | COG2832 | Uncharacterized protein conserved in bacteria | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Escherichia coli K12 (Enterobacteriales | Gammaproteobacteria) | ||||
| ybaN | ||||
125 letters (r) 0
0 476 = ||| 1 ECs0521 (125) = 0
4
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ybaN
(125 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
ECs0521 187 3e-48
ZybaN 187 3e-48
ybaN 187 3e-48
STM0482 149 1e-36
VC1052 88 3e-18
NMA0754 74 7e-14
PA1439 73 1e-13
FN2099 72 2e-13
NMB0571 72 3e-13
SA0161 67 7e-12
AGc4462 65 2e-11
BMEI1990 56 1e-08
SP1261 52 2e-07
PM0679 46 1e-05
SMb20557 43 1e-04
DR1457 38 0.004
Rv2320c 27 7.3
MT2383 27 7.4
MPN264 27 7.6
YLR083c 27 8.0
# >ECs0521
# Length = 125
#
# Score = 187 bits (476), Expect = 3e-48
# Identities = 125/125 (100%), Positives = 125/125 (100%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL
# Sbjct: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
# RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE
# Sbjct: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
#
# Query: 121 KQEKH 125
# KQEKH
# Sbjct: 121 KQEKH 125
#
#
# >ZybaN
# Length = 125
#
# Score = 187 bits (476), Expect = 3e-48
# Identities = 125/125 (100%), Positives = 125/125 (100%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL
# Sbjct: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
# RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE
# Sbjct: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
#
# Query: 121 KQEKH 125
# KQEKH
# Sbjct: 121 KQEKH 125
#
#
# >ybaN
# Length = 125
#
# Score = 187 bits (476), Expect = 3e-48
# Identities = 125/125 (100%), Positives = 125/125 (100%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL
# Sbjct: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
# RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE
# Sbjct: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
#
# Query: 121 KQEKH 125
# KQEKH
# Sbjct: 121 KQEKH 125
#
#
# >STM0482
# Length = 125
#
# Score = 149 bits (375), Expect = 1e-36
# Identities = 105/124 (84%), Positives = 112/124 (89%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# MQR ILIIIGWLAVVLGTLGVVLP+LPTTPFILLAAWCFARSSPRFHAWLLYRSWFG YL
# Sbjct: 1 MQRTILIIIGWLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGGYL 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPVIDE 120
# R WQ++ AMP G KPRAI LILLTF ISLW V M WVR++LLVILACLL +MWRIPVIDE
# Sbjct: 61 RHWQRYRAMPPGAKPRAIALILLTFGISLWLVNMMWVRVLLLVILACLLIFMWRIPVIDE 120
#
# Query: 121 KQEK 124
# KQ+K
# Sbjct: 121 KQQK 124
#
#
# >VC1052
# Length = 132
#
# Score = 87.8 bits (216), Expect = 3e-18
# Identities = 55/128 (42%), Positives = 84/128 (64%), Gaps = 3/128 (2%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# + R + +IG ++ LG LG+ LP+LPTTPFILL++ CF RSSPRF+ WL + FG +
# Sbjct: 5 LPRFLFSVIGITSLCLGILGIFLPLLPTTPFILLSSACFLRSSPRFYRWLNQHATFGPMI 64
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIP---V 117
# + WQ+H A+ + VK RA L I+L+FA S+W V W+++ L + L L+ + R+P +
# Sbjct: 65 QNWQQHGAVSKAVKKRATLFIVLSFAFSIWMVPWLWLKVALFIWLVLLITWFIRLPTHEL 124
#
# Query: 118 IDEKQEKH 125
# + +QE H
# Sbjct: 125 VANQQENH 132
#
#
# >NMA0754
# Length = 119
#
# Score = 73.6 bits (179), Expect = 7e-14
# Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# M R +LI G ++++LG +G+ LP+LPTTPF+LL+A C+A++SPRFH WL +FG +
# Sbjct: 1 MIRYLLIACGCISLLLGIIGIFLPLLPTTPFVLLSAACWAKASPRFHRWLHRHRYFGPMV 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLW-FVQMPWVRIMLLVILACLLFYMWRIP 116
# W+++ A+PR K AI ++ + I W F Q WV + V + + +MWR P
# Sbjct: 61 HNWEQNGAVPRKAKIFAISMMTASCLIMFWQFPQRWWVGAVSSVFCSLVAIWMWRRP 117
#
#
# >PA1439
# Length = 135
#
# Score = 72.8 bits (177), Expect = 1e-13
# Identities = 46/112 (41%), Positives = 67/112 (59%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# R L +G+L+V LG +G+ LPVLPTTPF+LLAA CF RSSPRF+ WL+ G ++R
# Sbjct: 15 RYSLQAVGFLSVALGVIGIFLPVLPTTPFLLLAAACFMRSSPRFYHWLVGHPRLGPWIRD 74
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWR 114
# + +P K AI L+ + A+S + V+ PW + +L + Y+ R
# Sbjct: 75 YLDGEGIPLKGKVYAIGLMWASIALSCYLVRRPWAQGFMLTSAVLVSIYILR 126
#
#
# >FN2099
# Length = 125
#
# Score = 72.0 bits (175), Expect = 2e-13
# Identities = 43/104 (41%), Positives = 64/104 (61%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# +++ I I +G LA+ LG +GV LPV+PT PF+L+A +CF RSS ++H +L +FG L
# Sbjct: 4 LKKKIYICVGLLALGLGIIGVFLPVMPTVPFLLVALFCFERSSKKYHDMILNNKYFGKIL 63
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVI 104
# R + + + VK +AIL + S + VQ +RIML VI
# Sbjct: 64 RDYYEGKGLTTSVKIKAILFLTCGIGFSFYKVQHLHLRIMLAVI 107
#
#
# >NMB0571
# Length = 119
#
# Score = 71.6 bits (174), Expect = 3e-13
# Identities = 47/117 (40%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
#
# Query: 1 MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYL 60
# M R +LI G ++++LG +G+ LP+LPTTPF+LL+A C+A++SPRF+ WL +FG +
# Sbjct: 1 MIRYLLIACGCISLLLGIIGIFLPLLPTTPFVLLSAACWAKASPRFYRWLHRHRYFGPMV 60
#
# Query: 61 RFWQKHHAMPRGVKPRAILLILLTFAISLW-FVQMPWVRIMLLVILACLLFYMWRIP 116
# W+++ A+PR K AI ++ + I W F Q WV + V + + +MWR P
# Sbjct: 61 HNWEQNGAVPRKAKIFAISMMTASCLIMFWQFPQRWWVGAVSSVFCSLVAIWMWRRP 117
#
#
# >SA0161
# Length = 127
#
# Score = 67.0 bits (162), Expect = 7e-12
# Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# R+ILI+IG + LG G VLP+LPTTPF+L+A +CFARSS RF+ WL+ + + Y+
# Sbjct: 2 RLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVEN 61
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVR----IMLLVILACLLFYMWRIPVI 118
# + H K + ++ + + S++ V + VR IM+++ A L ++ +P
# Sbjct: 62 FYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKS 121
#
# Query: 119 DEKQEK 124
# + K E+
# Sbjct: 122 NHKIEE 127
#
#
# >AGc4462
# Length = 120
#
# Score = 65.5 bits (158), Expect = 2e-11
# Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# R++ + +GWL V G +G LPVLPTTPF+LLA WCF+RSSP+ AWLL FG LR
# Sbjct: 4 RLLYLCLGWLMVATGIVGAFLPVLPTTPFLLLALWCFSRSSPKLEAWLLAHPRFGPSLRR 63
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMP 95
# W++ A+ R K A+ + +++A + WF+ P
# Sbjct: 64 WRERGAIARKAKIAALSAMTVSYA-AFWFLSEP 95
#
#
# >BMEI1990
# Length = 146
#
# Score = 56.2 bits (134), Expect = 1e-08
# Identities = 35/89 (39%), Positives = 52/89 (58%)
#
# Query: 2 QRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLR 61
# +R++ + +G+L + LG +G LPV+PTT F++LAAW FARSSP A LL FG +
# Sbjct: 29 KRMLYLCLGFLMLALGIIGAFLPVMPTTIFVILAAWFFARSSPVLEARLLADPRFGPLVI 88
#
# Query: 62 FWQKHHAMPRGVKPRAILLILLTFAISLW 90
# W++ A+P K A L + + W
# Sbjct: 89 KWRERGAIPPRAKLYACLGMAFGYGFFWW 117
#
#
# >SP1261
# Length = 119
#
# Score = 52.0 bits (123), Expect = 2e-07
# Identities = 42/113 (37%), Positives = 74/113 (65%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# RII +IIG+L++ L +GVVLP+LPTTPF+LL+ CF+RSS RF WL + + +Y+
# Sbjct: 2 RIIYLIIGFLSLTLAIVGVVLPLLPTTPFLLLSIACFSRSSKRFEDWLYHTKLYQAYVAD 61
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRI 115
# +++ ++ R K + I+ I + IS++F + V+I L + + +Y++++
# Sbjct: 62 FRETKSIARERKKKIIVSIYVLMGISIYFAPLLPVKIGLGALTIFITYYLFKV 114
#
#
# >PM0679
# Length = 120
#
# Score = 46.2 bits (108), Expect = 1e-05
# Identities = 36/119 (30%), Positives = 68/119 (56%), Gaps = 1/119 (0%)
#
# Query: 3 RIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF 62
# + I I++G++ + LG +G++LP+LP TPF+LL + FA+ S R H W L W+ +L+
# Sbjct: 2 KAIYILLGFIFLGLGIVGIILPLLPATPFLLLTLFFFAKGSDRLHHWFLQTPWYNKHLKS 61
#
# Query: 63 WQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVR-IMLLVILACLLFYMWRIPVIDE 120
# +++ A+ + K +L + +I +F R I++LV+L F+ + I + +
# Sbjct: 62 FKEERALTQKSKFWILLFATIMLSIGFYFTPSVVGRTIIVLVLLTKYWFFFFWIKTVKQ 120
#
#
# >SMb20557
# Length = 111
#
# Score = 42.7 bits (99), Expect = 1e-04
# Identities = 43/90 (47%), Positives = 56/90 (61%), Gaps = 1/90 (1%)
#
# Query: 14 VVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGV 73
# V LG +G+ LP+LPTTPF+LLAAW F+RSSPR WL+ FG LR W++ A+ R
# Sbjct: 2 VGLGIVGIFLPLLPTTPFLLLAAWLFSRSSPRLAKWLMDHPLFGPPLRDWREGGAISRRA 61
#
# Query: 74 KPRAILLILLTFAISLWFVQMPWVRIMLLV 103
# K A+LL+ L I LW P +L+V
# Sbjct: 62 KISAVLLMSLAL-IYLWVAFEPSAIALLVV 90
#
#
# >DR1457
# Length = 144
#
# Score = 37.7 bits (86), Expect = 0.004
# Identities = 36/103 (34%), Positives = 56/103 (53%), Gaps = 5/103 (4%)
#
# Query: 7 IIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKH 66
# + +G++ LG LG++LP LP T F +LAA FA+ PR+ AWLL R G ++ +++
# Sbjct: 30 VAVGFMLTGLGFLGLILPGLPGTVFFVLAAAAFAKGDPRWEAWLLSRPVVGQMVQDYREG 89
#
# Query: 67 HAMPRGVKPRAILLILLTFAISLWFV-----QMPWVRIMLLVI 104
# MP K A I++ + SL + Q+ WV + L I
# Sbjct: 90 KGMPLRAKWIACACIVVAVSFSLTRIPVLVGQVTWVLVALFGI 132
#
#
# >Rv2320c
# Length = 476
#
# Score = 26.9 bits (58), Expect = 7.3
# Identities = 14/52 (26%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
#
# Query: 20 GVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF---WQKHHA 68
# G +P P TP + + A + +S ++ WL + W + F W +HH+
# Sbjct: 418 GFKVPGYPVTPVLSVLACGYILASLHWYTWLAFSGWVAVAVIFYLMWGRHHS 469
#
#
# >MT2383
# Length = 471
#
# Score = 26.9 bits (58), Expect = 7.4
# Identities = 14/52 (26%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
#
# Query: 20 GVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRF---WQKHHA 68
# G +P P TP + + A + +S ++ WL + W + F W +HH+
# Sbjct: 413 GFKVPGYPVTPVLSVLACGYILASLHWYTWLAFSGWVAVAVIFYLMWGRHHS 464
#
#
# >MPN264
# Length = 281
#
# Score = 26.9 bits (58), Expect = 7.6
# Identities = 11/41 (26%), Positives = 21/41 (50%), Gaps = 7/41 (17%)
#
# Query: 27 PTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHH 67
# P P+I+L A +F+AWL+ + W+ +++ H
# Sbjct: 120 PKAPYIILGA-------NQFYAWLIKQFWYKQRCEYFKNDH 153
#
#
# >YLR083c
# Length = 667
#
# Score = 26.9 bits (58), Expect = 8.0
# Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
#
# Query: 6 LIIIGWLAVVLGTLGVVLP----VLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLR 61
# L ++ ++ LG + P L T FIL A + F S + + +Y+ + G Y
# Sbjct: 379 LFLMVTCSIFFAALGFLSPSSRGSLATVMFILYALFGFVGS---YTSMGIYKFFNGPY-- 433
#
# Query: 62 FWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLLVILACLLFYMWRIPV 117
# W+ + + + P AILLI++ L FV V + L++++ IP+
# Sbjct: 434 -WKANLILTPLLVPGAILLIIIALNFFLMFVHSSGVIPASTLFFMVFLWFLFSIPL 488
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.337 0.147 0.526
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,255,900
Number of Sequences: 192987
Number of extensions: 579128
Number of successful extensions: 3243
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3195
Number of HSP's gapped (non-prelim): 79
length of query: 125
length of database: 59,019,183
effective HSP length: 101
effective length of query: 24
effective length of database: 39,527,496
effective search space: 948659904
effective search space used: 948659904
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)