proteins
| 38 proteins |
S | COG0398 | Uncharacterized conserved protein | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Streptococcus pneumoniae TIGR4 (Lactobacillales | Bacilli) | ||||
| SP1720 | ||||
205 letters (r) 0
0 885 = ||| 1 SP1720 (205) = -5
2 189 = ||| 2 SPy1288 (118) =
-2
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SP1720
(205 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
SP1720 345 4e-95
L114884 127 2e-29
SPy1288 77 2e-14
SPy1289 63 4e-10
CAC2706 58 2e-08
ydjX 48 1e-05
ECs2456 48 2e-05
ZydjX 48 2e-05
all7589 44 3e-04
slr0305 42 0.001
ydjZ 41 0.002
ECs2458 40 0.004
SA0824 40 0.004
ZydjZ 40 0.004
lin0932 39 0.006
BS_yhjE 39 0.009
alr2207 39 0.011
all5119 38 0.017
alr5186 37 0.024
BS_ytxB 37 0.036
BH2293 35 0.13
CAC0677 34 0.26
BH3135 34 0.27
CC1538 33 0.41
aq_2066 31 1.9
MT1538 31 2.1
Rv1491c 31 2.1
# >SP1720
# Length = 205
#
# Score = 345 bits (885), Expect = 4e-95
# Identities = 205/205 (100%), Positives = 205/205 (100%)
#
# Query: 1 MSQDKQMKAVSPLLQRVINISSIVGGVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGP 60
# MSQDKQMKAVSPLLQRVINISSIVGGVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGP
# Sbjct: 1 MSQDKQMKAVSPLLQRVINISSIVGGVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGP 60
#
# Query: 61 PLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAF 120
# PLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAF
# Sbjct: 61 PLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAF 120
#
# Query: 121 VQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLAALTKMSFKRYMTIII 180
# VQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLAALTKMSFKRYMTIII
# Sbjct: 121 VQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLAALTKMSFKRYMTIII 180
#
# Query: 181 LTKPFTLVVYTYGLTYIIDFFWQML 205
# LTKPFTLVVYTYGLTYIIDFFWQML
# Sbjct: 181 LTKPFTLVVYTYGLTYIIDFFWQML 205
#
#
# >L114884
# Length = 201
#
# Score = 127 bits (319), Expect = 2e-29
# Identities = 74/193 (38%), Positives = 124/193 (63%), Gaps = 1/193 (0%)
#
# Query: 14 LQRVINISSIVGGVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGPPLFIFLQILQTVV 73
# ++RV N+ +I+G V +++ I+ ++ G Q++ L I GP +F+ +QILQ +V
# Sbjct: 9 IKRVFNLITILGFVATIVGGIYLWRLGAFQNQAVLQQLIVAHRFLGPLIFLCMQILQVIV 68
#
# Query: 74 PIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAFVQSVVSKRTYDKY 133
# PIIPG +T AGV I+G + G +YNY GIV G ++F+ + YG++ ++ V ++TY+KY
# Sbjct: 69 PIIPGGITMAAGVMIFGPVWGFVYNYFGIVAGSFLLFHFGKKYGSSLAKTFVKEKTYNKY 128
#
# Query: 134 IDWLDKGN-RFDRFFIFMMIWPISPADFLCMLAALTKMSFKRYMTIIILTKPFTLVVYTY 192
# + WLDKG RF+ F +++ PI+P D L ++A+ TKMS+K + I+L KP +++Y+Y
# Sbjct: 129 MAWLDKGQKRFNIVFALLILSPIAPDDALVLIASQTKMSWKFFTWSILLCKPLPILLYSY 188
#
# Query: 193 GLTYIIDFFWQML 205
# L + D +L
# Sbjct: 189 LLIFGGDLLGHIL 201
#
#
# >SPy1288
# Length = 118
#
# Score = 77.4 bits (189), Expect = 2e-14
# Identities = 43/101 (42%), Positives = 68/101 (66%), Gaps = 1/101 (0%)
#
# Query: 92 IIGTIYNYIGIVIGCAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMM 151
# + G IYNY+GI+IG +F LV+ YG F+ V+ +T+ KY L+ +++ FIF M
# Sbjct: 4 VTGFIYNYVGIIIGSIALFLLVKTYGRKFILLFVNDKTFYKYERRLETPG-YEKLFIFCM 62
#
# Query: 152 IWPISPADFLCMLAALTKMSFKRYMTIIILTKPFTLVVYTY 192
# P+SPAD + M+ LT MS KR++TI+++TKP +++ Y+Y
# Sbjct: 63 ASPVSPADIMVMITGLTDMSLKRFVTILLITKPISIIGYSY 103
#
#
# >SPy1289
# Length = 95
#
# Score = 63.2 bits (152), Expect = 4e-10
# Identities = 33/78 (42%), Positives = 48/78 (61%)
#
# Query: 13 LLQRVINISSIVGGVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGPPLFIFLQILQTV 72
# L Q++I I I+ +G+ W Y+ GIL L +Q+ +WGP +FI +QI+Q V
# Sbjct: 11 LWQKIIKILGIIALIGTFFLAFWLYRLGILNDSNALKDLVQRYRLWGPFVFIVVQIIQIV 70
#
# Query: 73 VPIIPGALTSVAGVFIYG 90
# P+IPG LT+VAG I+G
# Sbjct: 71 FPVIPGGLTTVAGFLIFG 88
#
#
# >CAC2706
# Length = 236
#
# Score = 57.8 bits (138), Expect = 2e-08
# Identities = 40/136 (29%), Positives = 67/136 (48%), Gaps = 1/136 (0%)
#
# Query: 41 ILQSKETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYI 100
# +L+S + + FI G +G F +Q+LQ V IPG + +AG +I+G GT+ + +
# Sbjct: 39 VLRSPQRVKEFILSYGKFGFFAFFVMQMLQVVAFFIPGEIIQIAGGYIFGTFWGTVISLL 98
#
# Query: 101 GIVIGCAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADF 160
# GI G A+ FYL G FV+ + K+ + + L K + + P P D
# Sbjct: 99 GITAGSAVAFYLSNKLGRPFVKKISGKQNI-SFFEKLIKNGEIKYVITLIYLVPGLPKDI 157
#
# Query: 161 LCMLAALTKMSFKRYM 176
# L + +T +S K ++
# Sbjct: 158 LAYVCGITDLSLKDFI 173
#
#
# >ydjX
# Length = 252
#
# Score = 48.1 bits (113), Expect = 1e-05
# Identities = 44/163 (26%), Positives = 78/163 (46%), Gaps = 3/163 (1%)
#
# Query: 30 LIFCIWAYQA-GILQSKETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFI 88
# +I+ I A+ +L L I+Q+G +G L+I L I+ T++ ++PG++ +AG +
# Sbjct: 33 VIYAIHAFGLFDLLTDLPHLQTLIRQSGFFGYSLYILLFIIATLL-LLPGSILVIAGGIV 91
#
# Query: 89 YGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFI 148
# +G ++GT+ + I + + F L R G + V + I+ N D F I
# Sbjct: 92 FGPLLGTLLSLIAATLASSCSFLLARWLGRDLLLKYVGHSNTFQAIEKGIARNGID-FLI 150
#
# Query: 149 FMMIWPISPADFLCMLAALTKMSFKRYMTIIILTKPFTLVVYT 191
# + P+ P + LT ++F Y I LT +V+YT
# Sbjct: 151 LTRLIPLFPYNIQNYAYGLTTIAFWPYTLISALTTLPGIVIYT 193
#
#
# >ECs2456
# Length = 252
#
# Score = 47.8 bits (112), Expect = 2e-05
# Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
#
# Query: 48 LSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCA 107
# L I+Q+G++G L+I L I+ T+ ++PG++ +AG ++G +GT+ + I + +
# Sbjct: 52 LQTLIRQSGLFGYSLYILLFIIATLF-LLPGSILVIAGGIVFGPFLGTLLSLIAATLASS 110
#
# Query: 108 IIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLAAL 167
# F L R G + V + I+ N D F I + P+ P + L
# Sbjct: 111 CSFLLARWMGRDLLLKYVGHSHTFQAIEKGIARNGID-FLILTRLIPLFPYNIQNYAYGL 169
#
# Query: 168 TKMSFKRYMTIIILTKPFTLVVYT 191
# T ++F Y I LT +V+YT
# Sbjct: 170 TTIAFWPYTLISALTTLPGIVIYT 193
#
#
# >ZydjX
# Length = 252
#
# Score = 47.8 bits (112), Expect = 2e-05
# Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
#
# Query: 48 LSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCA 107
# L I+Q+G++G L+I L I+ T+ ++PG++ +AG ++G +GT+ + I + +
# Sbjct: 52 LQTLIRQSGLFGYSLYILLFIIATLF-LLPGSILVIAGGIVFGPFLGTLLSLIAATLASS 110
#
# Query: 108 IIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLAAL 167
# F L R G + V + I+ N D F I + P+ P + L
# Sbjct: 111 CSFLLARWMGRDLLLKYVGHSHTFQAIEKGIARNGID-FLILTRLIPLFPYNIQNYAYGL 169
#
# Query: 168 TKMSFKRYMTIIILTKPFTLVVYT 191
# T ++F Y I LT +V+YT
# Sbjct: 170 TTIAFWPYTLISALTTLPGIVIYT 193
#
#
# >all7589
# Length = 231
#
# Score = 43.5 bits (101), Expect = 3e-04
# Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 10/170 (5%)
#
# Query: 30 LIFCIWAYQAGI-LQSKETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFI 88
# L C W + L + E ++ G+ GP ++I + L V+ IP A +V I
# Sbjct: 26 LAVCYWLLNPQLNLLTPEGFRQTVKNLGLLGPFVYIGILALSVVISPIPSAPLAVIAGTI 85
#
# Query: 89 YGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFI 148
# +G + +Y+ IG +G I ++L R G + ++++ K Y +KG + + I
# Sbjct: 86 WGTFMAGVYSIIGGFLGGLIAYFLGRTLGRSAIKALTGKIIYFSK----NKGETYLSWLI 141
#
# Query: 149 FMM-IWPISPADFLCMLAALTKMSFKRYMTIIILTKPFTLVVYTYGLTYI 197
# F+ + PI D + A + +SF +Y L ++ T+ LTY+
# Sbjct: 142 FITRMLPIFSFDLISYAAGIAGLSFPKYAIATFL----GMIPSTFLLTYM 187
#
#
# >slr0305
# Length = 209
#
# Score = 41.6 bits (96), Expect = 0.001
# Identities = 33/126 (26%), Positives = 58/126 (45%), Gaps = 2/126 (1%)
#
# Query: 51 FIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIF 110
# +I G W F+ L + TVV +PG++ ++ ++G I+G+IY +IG +G F
# Sbjct: 11 WIDGLGTWAAIAFMLLYTVATVV-FLPGSILTLGAGVVFGVILGSIYVFIGATLGATAAF 69
#
# Query: 111 YLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLAALTKM 170
# + R +V ++ K ID G + I + P+ P + L +T +
# Sbjct: 70 LVGRYLARGWVAKKIAGNQKFKAIDEA-VGKEGLKIVILTRLSPVFPFNLLNYAYGITNV 128
#
# Query: 171 SFKRYM 176
# S K Y+
# Sbjct: 129 SLKDYV 134
#
#
# >ydjZ
# Length = 235
#
# Score = 41.2 bits (95), Expect = 0.002
# Identities = 31/148 (20%), Positives = 63/148 (41%), Gaps = 2/148 (1%)
#
# Query: 45 KETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVI 104
# ++ + FIQ G + L ILQ + +P L + A ++G G + ++ +
# Sbjct: 49 QQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLSWTSSMA 108
#
# Query: 105 GCAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCML 164
# G A+ F++ R+ G V+ + K D + + + + + P P D +
# Sbjct: 109 GAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHT--ILVCRLLPFVPFDPISYA 166
#
# Query: 165 AALTKMSFKRYMTIIILTKPFTLVVYTY 192
# A LT + F+ + L + +VY++
# Sbjct: 167 AGLTSIRFRSFFIATGLGQLPATIVYSW 194
#
#
# >ECs2458
# Length = 235
#
# Score = 40.0 bits (92), Expect = 0.004
# Identities = 31/148 (20%), Positives = 62/148 (40%), Gaps = 2/148 (1%)
#
# Query: 45 KETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVI 104
# ++ + FIQ G + L ILQ + +P L + A ++G G ++ +
# Sbjct: 49 QQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGSLSWTSSMA 108
#
# Query: 105 GCAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCML 164
# G A+ F++ R+ G V+ + K D + + + + + P P D +
# Sbjct: 109 GAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHT--ILVCRLLPFVPFDPISYA 166
#
# Query: 165 AALTKMSFKRYMTIIILTKPFTLVVYTY 192
# A LT + F+ + L + +VY++
# Sbjct: 167 AGLTSIRFRSFFIATGLGQLPATIVYSW 194
#
#
# >SA0824
# Length = 191
#
# Score = 39.7 bits (91), Expect = 0.004
# Identities = 29/133 (21%), Positives = 67/133 (49%), Gaps = 4/133 (3%)
#
# Query: 61 PLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIFYLV-RLYGAA 119
# P FI L I + ++P+ P AL + + YG I+G + +++G++ G ++ + RL
# Sbjct: 20 PGFILLYI-RAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTE 78
#
# Query: 120 FVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLAALTKMSFKRYMTII 179
# +Q + + + I ++D+ F ++ +P +P + +A+L+ + K Y ++
# Sbjct: 79 RMQRIKQRTAVQRLISFIDRQGLIPLF--ILLCFPFTPNTLINFVASLSHIRPKYYFIVL 136
#
# Query: 180 ILTKPFTLVVYTY 192
# +K + ++ Y
# Sbjct: 137 ASSKLVSTIILGY 149
#
#
# >ZydjZ
# Length = 235
#
# Score = 39.7 bits (91), Expect = 0.004
# Identities = 31/148 (20%), Positives = 62/148 (40%), Gaps = 2/148 (1%)
#
# Query: 45 KETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVI 104
# ++ + FIQ G + L ILQ + +P L + A ++G G ++ +
# Sbjct: 49 QQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGSLSWTSSMA 108
#
# Query: 105 GCAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCML 164
# G A+ F++ R+ G V+ + K D + + + + + P P D +
# Sbjct: 109 GAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHT--ILVCRLLPFVPFDPISYA 166
#
# Query: 165 AALTKMSFKRYMTIIILTKPFTLVVYTY 192
# A LT + F+ + L + +VY++
# Sbjct: 167 AGLTSIRFRSFFIATGLGQLPATIVYSW 194
#
#
# >lin0932
# Length = 201
#
# Score = 39.3 bits (90), Expect = 0.006
# Identities = 32/150 (21%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
#
# Query: 44 SKETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIV 103
# S + L ++ + GP L FL ++ +P +P + V V YG G + + +
# Sbjct: 12 SYDNLMYWLSEYRNLGPLLAFFLPFIEAFLPFLPFIVFVVVNVNAYGLFGGFLISVTAAI 71
#
# Query: 104 IGCAIIFYLVRLYGAA-FVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLC 162
# G +F L R +G F++ + + + ++W+D+ + F FI +++ P +P+ +
# Sbjct: 72 AGSLCVFLLARKFGQTRFLRFISGHKQIKRVMEWIDR-HGFSPIFI-LLVMPFTPSSAVN 129
#
# Query: 163 MLAALTKMSFKRYMTIIILTKPFTLVVYTY 192
# ++A L+K+ +++ ++ K + +Y
# Sbjct: 130 IVAGLSKIKVYQFILALVGGKLIKVFAISY 159
#
#
# >BS_yhjE
# Length = 207
#
# Score = 38.9 bits (89), Expect = 0.009
# Identities = 32/137 (23%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
#
# Query: 44 SKETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIV 103
# ++E L+ Q +GP + + L +++ +P +P + VA +G G I ++ G
# Sbjct: 10 TQEHLTELFQSYRAFGPLIAVLLPLIEAFLPFLPLIVFVVANTNSFGLWEGFILSWAGST 69
#
# Query: 104 IGCAIIFYLVRLYGA----AFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPAD 159
# G ++F +VR YG F++S S R K + W+++ + F F+ ++ +P +P+
# Sbjct: 70 AGSILVFLIVRQYGQRKLLGFIRSHPSVR---KLMLWVER-HGFGPMFL-LLCFPFTPSA 124
#
# Query: 160 FLCMLAALTKMSFKRYM 176
# + ++A L+++ + ++
# Sbjct: 125 AVNVVAGLSRIGTRPFI 141
#
#
# >alr2207
# Length = 282
#
# Score = 38.5 bits (88), Expect = 0.011
# Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 3/142 (2%)
#
# Query: 51 FIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIF 110
# +I G G FI L I+ TV +PG++ ++ ++G + G++Y +IG IG F
# Sbjct: 76 WIDGLGAVGALAFILLYIIATVA-FLPGSILTLGAGVVFGVVWGSLYVFIGATIGATAAF 134
#
# Query: 111 YLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLAALTKM 170
# + R +V + + ID G + + + PI P + L +T +
# Sbjct: 135 LVGRYLARGWVAKKIVGNQKFRAIDEA-VGREGLKIVLLTRLSPIFPFNLLNYAYGVTGV 193
#
# Query: 171 SFKRYMTIIILTKPFTLVVYTY 192
# S K Y+ I P T ++Y Y
# Sbjct: 194 SLKDYVLASIGMIPGT-IMYVY 214
#
#
# >all5119
# Length = 220
#
# Score = 37.7 bits (86), Expect = 0.017
# Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
#
# Query: 46 ETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIG 105
# E + A+++ AGIW P ++ + ++ T++ I+P ++ G I+G +GT + +G +I
# Sbjct: 32 ELIQAWLKAAGIWAPVTYVAVYVVATIL-ILPSTALNLTGGAIFGPWMGTFWTSVGAIIA 90
#
# Query: 106 CAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLA 165
# F R G V ++ R + + +G F F I +M PI P + A
# Sbjct: 91 AIAAFIFARTVGREIVAQRLAGR-WQAIDAEVRQGAVFYMFAIRLM--PILPYGLVNFAA 147
#
# Query: 166 ALTKMSFKRYM 176
# LT +SFK Y+
# Sbjct: 148 GLTSISFKDYL 158
#
#
# >alr5186
# Length = 250
#
# Score = 37.4 bits (85), Expect = 0.024
# Identities = 36/151 (23%), Positives = 69/151 (44%), Gaps = 2/151 (1%)
#
# Query: 26 GVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAG 85
# G+ I I A Q I +TL ++Q G +GP ++ + L T++ IPG++ ++
# Sbjct: 19 GLTIAILIIVARQFNIQALLQTLILWVQSLGFFGPIAYMIIYNLATLL-FIPGSILTLKS 77
#
# Query: 86 VFIYGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDR 145
# ++G G++Y I +G + F++ R +V + K K ID + +
# Sbjct: 78 GCLFGVFWGSVYVLIAATVGAILAFFIGRYLSRDWVVRQIDKYPKFKMIDQSVAKEGW-K 136
#
# Query: 146 FFIFMMIWPISPADFLCMLAALTKMSFKRYM 176
# + + P+ P + L +T +S K Y+
# Sbjct: 137 IVLLTRLSPVFPFNLLNYAFGVTCISLKDYI 167
#
#
# >BS_ytxB
# Length = 213
#
# Score = 36.6 bits (83), Expect = 0.036
# Identities = 24/97 (24%), Positives = 52/97 (52%), Gaps = 4/97 (4%)
#
# Query: 22 SIVGGVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALT 81
# +++ G G L W + + S + + ++ G++ P +FI + I++ +V + P ++
# Sbjct: 11 AVLAGAGLL---YWGNKTYLNVSPKEIRVWVLSFGVFAPLMFIGISIVRPLV-LFPVSVI 66
#
# Query: 82 SVAGVFIYGHIIGTIYNYIGIVIGCAIIFYLVRLYGA 118
# S+AG +G ++GT+Y G + A+ F+ L+ A
# Sbjct: 67 SIAGGLAFGPLLGTLYTLFGSMCASAVSFFAAGLFSA 103
#
#
# >BH2293
# Length = 212
#
# Score = 34.7 bits (78), Expect = 0.13
# Identities = 37/145 (25%), Positives = 67/145 (45%), Gaps = 1/145 (0%)
#
# Query: 46 ETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIG 105
# E L +IQQ G L + + L + PIIP + YG +G+ +IG +
# Sbjct: 23 EWLLEWIQQGGARFIFLTVIIATLLALFPIIPYPIIGGVLGAAYGPFLGSAVTWIGSSLA 82
#
# Query: 106 CAIIFYLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRFFIFMMIWPISPADFLCMLA 165
# I+F VR + S++ + + + + N F FI +I PI P+ + + +
# Sbjct: 83 SIIMFMFVRYGYQDWGLSLIRRSDLVTKVTAMFEKNAFMAIFITRLI-PIIPSIIVNIYS 141
#
# Query: 166 ALTKMSFKRYMTIIILTKPFTLVVY 190
# AL+++SF Y L K +++++
# Sbjct: 142 ALSRVSFINYSIASSLGKVPSMILF 166
#
#
# >CAC0677
# Length = 229
#
# Score = 33.9 bits (76), Expect = 0.26
# Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
#
# Query: 51 FIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIF 110
# +I G + +F+ + L+ ++ +IP + SV I+G + + +G + ++ F
# Sbjct: 54 YILSYGPYSSLVFVIIYSLKPILLVIPVSALSVIAGGIFGPLKAFCLSMLGCFLSGSLAF 113
#
# Query: 111 YLVRLYGAAFVQSVVSKRTYDKYIDWLDKGNRFDRF-FIFMMIWPIS---PADFLCMLAA 166
# +L R G FV ++ + ++ N D+ FI M++ +S P D L A
# Sbjct: 114 FLARKLGRPFVDKILKGKV-------MNLDNSLDKHGFIIMLLMRLSFVFPYDPLSYAAG 166
#
# Query: 167 LTKMSFKRYM 176
# LTK+ + ++
# Sbjct: 167 LTKIKYTDFI 176
#
#
# >BH3135
# Length = 188
#
# Score = 33.9 bits (76), Expect = 0.27
# Identities = 21/68 (30%), Positives = 37/68 (53%), Gaps = 1/68 (1%)
#
# Query: 46 ETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVIG 105
# ET I+Q+G P LFI L + + V IP + + G +++G G++Y+ IG+
# Sbjct: 6 ETSLKVIEQSGWLAPVLFIMLHVFRQVF-FIPVIIICLVGGYLFGSFYGSLYSIIGLTAT 64
#
# Query: 106 CAIIFYLV 113
# A+ + +V
# Sbjct: 65 SALFYGIV 72
#
#
# >CC1538
# Length = 239
#
# Score = 33.1 bits (74), Expect = 0.41
# Identities = 35/160 (21%), Positives = 73/160 (44%), Gaps = 4/160 (2%)
#
# Query: 16 RVINISSIVGGVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGPPLFIFLQILQTVVPI 75
# R++ +S ++ G L+F A G+ + +G W P+ + + + +
# Sbjct: 18 RMVAVSFVLFGGVGLVFLFGAQLLGLNGEATVEHWLLAASGPWALPVAVAVFAIMAFLG- 76
#
# Query: 76 IPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAFVQSVVSKRTYDKYID 135
# +P + A V +G G Y++IG ++ + F+L R YGA ++ + + +K++
# Sbjct: 77 VPQFVLIAAAVVAFGPWTGFAYSWIGTLVSSLVGFWLGRAYGARILRDFAGE-SVNKFMR 135
#
# Query: 136 WLDKGNRFDRFFIFMMIWPISPADFLCMLAALTKMSFKRY 175
# + K N F I ++ P +P + M A +T M + +
# Sbjct: 136 MIGK-NGFMASLIVRLV-PSAPFIVVNMAAGVTPMRLRDF 173
#
#
# >aq_2066
# Length = 156
#
# Score = 30.8 bits (68), Expect = 1.9
# Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
#
# Query: 45 KETLSAFIQQAGIWGPPLFIFLQILQTVVPIIPGALTSVAGVFIYGHIIGTIYNYIGIVI 104
# KETL AF++ G G L F + + P+ P + A F +I + +G V+
# Sbjct: 5 KETLEAFVEGYGYIGIFLIAFTE--SIIQPVPPDPFIAGATAFGLNPLISALVATLGSVL 62
#
# Query: 105 GCAIIFYLVRLYGAAFVQSVVSKRTYDK 132
# G + ++L R++G + ++ + + K
# Sbjct: 63 GGLVAYFLGRVFGEPVAKKLLGEEKFLK 90
#
#
# >MT1538
# Length = 252
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 28/117 (23%), Positives = 50/117 (41%), Gaps = 2/117 (1%)
#
# Query: 16 RVINISSIVGGVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGPPLFIFLQILQTVVPI 75
# R ++ IVG V + + + + L + + G W P F+ + + TV P
# Sbjct: 25 RQASLPRIVGTVVGITVLVVVALLVPVPTAVELRDWAKSLGAWFPLAFLLVHTVVTVPPF 84
#
# Query: 76 IPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAFVQSVVSKRTYDK 132
# A T AG+ ++G ++G +G I LVR G + S+V +R ++
# Sbjct: 85 PRTAFTLAAGL-LFGSVVGVFIAVVGSTASAVIAMLLVRATGWQ-LNSLVRRRAINR 139
#
#
# >Rv1491c
# Length = 252
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 28/117 (23%), Positives = 50/117 (41%), Gaps = 2/117 (1%)
#
# Query: 16 RVINISSIVGGVGSLIFCIWAYQAGILQSKETLSAFIQQAGIWGPPLFIFLQILQTVVPI 75
# R ++ IVG V + + + + L + + G W P F+ + + TV P
# Sbjct: 25 RQASLPRIVGTVVGITVLVVVALLVPVPTAVELRDWAKSLGAWFPLAFLLVHTVVTVPPF 84
#
# Query: 76 IPGALTSVAGVFIYGHIIGTIYNYIGIVIGCAIIFYLVRLYGAAFVQSVVSKRTYDK 132
# A T AG+ ++G ++G +G I LVR G + S+V +R ++
# Sbjct: 85 PRTAFTLAAGL-LFGSVVGVFIAVVGSTASAVIAMLLVRATGWQ-LNSLVRRRAINR 139
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.333 0.147 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,993,803
Number of Sequences: 192987
Number of extensions: 915859
Number of successful extensions: 3628
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 3580
Number of HSP's gapped (non-prelim): 73
length of query: 205
length of database: 59,019,183
effective HSP length: 104
effective length of query: 101
effective length of database: 38,948,535
effective search space: 3933802035
effective search space used: 3933802035
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)