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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract 


RepeatMasker repeats found in sequence:

No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.


Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.


Query=  A01c07
        (948 letters)

  Translating both strands of query sequence in all 6 reading frames


Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 5 Sequences     : less than 5 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1326 250 |==================================================
   6310 1076 157 |===============================
   3980  919 110 |======================
   2510  809 204 |========================================
   1580  605 115 |=======================
   1000  490 109 |=====================
    631  381  37 |=======
    398  344  27 |=====
    251  317  17 |===
    158  300  16 |===
    100  284  12 |==
   63.1  272   3 |:
   39.8  269   5 |=
   25.1  264   4 |:
   15.8  260   2 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 258  <<<<<<<<<<<<<<<<<
   10.0  258   0 |
   6.31  258   1 |:
   3.98  257   3 |:
   2.51  254   5 |=
   1.58  249   1 |:
   1.00  248   2 |:
   0.63  246   0 |
   0.40  246   0 |
   0.25  246   0 |
   0.16  246   0 |
   0.10  246   0 |
  0.063  246   0 |
  0.040  246   2 |:
  0.025  244   0 |
  0.016  244   0 |
  0.010  244   0 |
 0.0063  244   0 |
 0.0040  244   1 |:
 0.0025  243   0 |
 0.0016  243   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|417103|sp|P11105|H32_MEDSAHISTONE H3.2, MINOR >gi|... +2   615  4.1e-59   1
gi|1053047|gb|AAB03538.1|(U38425) histone H3 [Glycine... +2   607  2.9e-58   1
gi|1053057|gb|AAB03542.1|(U38422) histone H3 [Triticu... +2   605  4.7e-58   1
gi|1053045|gb|AAB03537.1|(U38424) histone H3 [Glycine... +2   602  9.7e-58   1
gi|1053059|gb|AAB03543.1|(U38423) histone H3 [Triticu... +2   597  3.3e-57   1
gi|2119013|pir||I49395histone H3.2 protein - shrew mo... +2   594  6.8e-57   1
gi|7305139ref|NP_038576.1| histone gene complex 1 >gi... +2   593  8.7e-57   1
gi|70743|pir||HSRK3histone H3 - striped catshark >gi|... +2   593  8.7e-57   1
gi|103198|pir||S10097histone H3 - fruit fly (Drosophi... +2   592  1.1e-56   1
gi|122085|sp|P05203|H3_MAIZEHISTONE H3 >gi|81641|pir|... +2   592  1.1e-56   1
gi|4504281ref|NP_003520.1| H3 histone family, member ... +2   592  1.1e-56   1
gi|70749|pir||HSBO3histone H3 - bovine >gi|3080462|em... +2   592  1.1e-56   1
gi|386772|gb|AAA52651.1|(M26150) histone H3 [Homo sap... +2   592  1.1e-56   1
gi|122087|sp|P02300|H3_PEAHISTONE H3 >gi|81849|pir||S... +2   591  1.4e-56   1
gi|70753|pir||HSPM3histone H3 - garden pea >gi|82610|... +2   591  1.4e-56   1
gi|90622|pir||S06743histone H3 - mouse >gi|51301|emb|... +2   590  1.8e-56   1
gi|484441|pir||JN0687histone H3 - sea squirt (Styela ... +2   590  1.8e-56   1
gi|1708108|sp|Q10453|H33_CAEELHISTONE H3.3 >gi|743981... +2   590  1.8e-56   1
gi|122088|sp|P02298|H3_PSAMIHISTONE H3, EMBRYONIC >gi... +2   589  2.3e-56   1
gi|70747|pir||HSUR3Mhistone H3, embryonic - sea urchi... +2   589  2.3e-56   1
gi|122083|sp|P08903|H3_ENCALHISTONE H3 >gi|70751|pir|... +2   589  2.3e-56   1
gi|122079|sp|P22843|H3_ACRFOHISTONE H3 >gi|84397|pir|... +2   589  2.3e-56   1
gi|422606|pir||S32638histone H3.l - African clawed fr... +2   589  2.3e-56   1
gi|2119011|pir||I48092histone H3.2 - long-tailed hams... +2   589  2.3e-56   1
gi|7415982|dbj|BAA93627.1|(AB019406) histone H3 [Dros... +2   589  2.3e-56   1
gi|166384|gb|AAA32655.1|(M35867) histone H3 (H3-1.1) ... +2   587  3.8e-56   1
gi|211855|gb|AAA48795.1|(J00869) histone H3 [Gallus g... +2   587  3.8e-56   1
gi|488571|gb|AAB36495.1|(U09462) histone H3.2 [Medica... +2   587  3.8e-56   1
gi|1362108|pir||S56707histone H3 homolog - common tob... +2   587  3.8e-56   1
gi|7510049|pir||T27037hypothetical protein Y49E10.6 -... +2   587  3.8e-56   1
gi|4504279ref|NP_002098.1| H3 histone, family 3A >gi|... +2   586  4.8e-56   1
gi|122090|sp|P08437|H3_VOLCAHISTONE H3 >gi|81287|pir|... +2   586  4.8e-56   1
gi|122082|sp|P02299|H3_DROMEHISTONE H3                   +2   586  4.8e-56   1
gi|2116601|dbj|BAA20144.1|(AB003784) Histone H3 [Dros... +2   585  6.2e-56   1
gi|2144744|pir||HSKW3histone H3 - Caenorhabditis eleg... +2   584  7.9e-56   1
gi|484530|pir||JQ1983H3.3 like histone MH921 - mouse     +2   584  7.9e-56   1
gi|122070|sp|P08860|H32_ORYSAHISTONE H3 >gi|82483|pir... +2   583  1.0e-55   1
gi|161319|gb|AAA30003.1|(J01175) histone H3 [Lytechin... +2   583  1.0e-55   1
gi|2119018|pir||S59592histone H3 (clone CH-I) - Chlam... +2   583  1.0e-55   1
gi|4504283ref|NP_003521.1| H3 histone family, member ... +2   583  1.0e-55   1
gi|1079199|pir||S50140histone H3.3 - sea urchin (Para... +2   582  1.3e-55   1
gi|122089|sp|P06352|H3_STRPUHISTONE H3, EMBRYONIC >gi... +2   581  1.6e-55   1
gi|70748|pir||HSUR3Phistone H3, embryonic - sea urchi... +2   581  1.6e-55   1
gi|7522681|gb|AAB27669.2|(S64499) H3 histone [Styela ... +2   581  1.6e-55   1
gi|2119012|pir||I50244histone 3.3A - chicken >gi|2118... +2   580  2.1e-55   1
gi|6686276|sp|P08898|H3_CAEELHISTONE H3                  +2   580  2.1e-55   1
gi|488573|gb|AAB36496.1|(U09463) histone H3.2 [Medica... +2   578  3.4e-55   1
gi|4504299ref|NP_003484.1| H3 histone family, member ... +2   578  3.4e-55   1
gi|85001|pir||JQ1343histone H3.3 - fruit fly (Drosoph... +2   576  5.5e-55   1
gi|484531|pir||JQ1984H3.3 like histone MH321 - mouse     +2   576  5.5e-55   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 2 Hits
gi|417103              |    _____________________                         
gi|1053047             |    ____________________                          
gi|1053057             |    ____________________                          
gi|1053045             |    ____________________                          
gi|1053059             |    ____________________                          
gi|2119013             |    _____________________                         
gi|7305139             |    _____________________                         
gi|70743               |    _____________________                         
gi|103198              |    _____________________                         
gi|122085              |    _____________________                         
gi|4504281             |    _____________________                         
gi|70749               |    _____________________                         
gi|386772              |    _____________________                         
gi|122087              |    _____________________                         
gi|70753               |    _____________________                         
gi|90622               |    _____________________                         
gi|484441              |    _____________________                         
gi|1708108             |    _____________________                         
gi|122088              |    _____________________                         
gi|70747               |    _____________________                         
gi|122083              |    _____________________                         
gi|122079              |    _____________________                         
gi|422606              |    _____________________                         
gi|2119011             |    _____________________                         
gi|7415982             |    _____________________                         
gi|166384              |    _____________________                         
gi|211855              |    _____________________                         
gi|488571              |     ____________________                         
gi|1362108             |    ____________________                          
gi|7510049             |    _____________________                         
gi|4504279             |    _____________________                         
gi|122090              |    _____________________                         
gi|122082              |    _____________________                         
gi|2116601             |    _____________________                         
gi|2144744             |    _____________________                         
gi|484530              |    ____________________                          
gi|122070              |    _____________________                         
gi|161319              |    _____________________                         
gi|2119018             |    _____________________                         
gi|4504283             |    _____________________                         
gi|1079199             |    _____________________                         
gi|122089              |    _____________________                         
gi|70748               |    _____________________                         
gi|7522681             |    _____________________                         
gi|2119012             |    _____________________                         
gi|6686276             |    _____________________                         
gi|488573              |     ____________________                         
gi|4504299             |    _____________________                         
gi|85001               |    _____________________                         
gi|484531              |    ____________________                          
Prosite Hits:                                    ___                      
                        __________________________________________________
Query sequence:        |       |       |       |       |       |       |  | 316
                       0      50     100     150     200     250     300
__________________
Prosite hits:
   PROKAR_LIPOPROTEIN   Prokaryotic membrane lipoprotein lipid a 165..175
__________________




Use the  and  icons to retrieve links to Entrez:

E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).

R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


WARNING:  Descriptions of 208 database sequences were not reported due to the
          limiting value of parameter V = 50.



to_Entrezto_Relatedto_Related >gi|417103|sp|P11105|H32_MEDSA  HISTONE H3.2, MINOR >gi|282871|pir||S24346
            histone H3.3-like protein - Arabidopsis thaliana
            >gi|16324|emb|CAA42957.1| (X60429) histone H3.3 like protein
            [Arabidopsis thaliana] >gi|404825|emb|CAA42958.1| (X60429) histone
            H3.3 like protein [Arabidopsis thaliana] >gi|488563|gb|AAB49538.1|
            (U09458) histone H3.2 [Medicago sativa] >gi|488567|gb|AAB36493.1|
            (U09460) histone H3.2 [Medicago sativa] >gi|488569|gb|AAB36494.1|
            (U09461) histone H3.2 [Medicago sativa] >gi|488575|gb|AAB36497.1|
            (U09464) histone H3.2 [Medicago sativa] >gi|488577|gb|AAB36498.1|
            (U09465) histone H3.2 [Medicago sativa] >gi|510911|emb|CAA56153.1|
            (X79714) histone H3 [Lolium temulentum] >gi|1435157|emb|CAA58445.1|
            (X83422) histone H3 variant H3.3 [Lycopersicon esculentum]
            >gi|2558944|gb|AAB97162.1| (AF024716) histone 3 [Gossypium
            hirsutum] >gi|3273350|dbj|BAA31218.1| (AB015760) histone H3
            [Nicotiana tabacum] >gi|3885890|gb|AAC78105.1| (AF093633) histone
            H3 [Oryza sativa] >gi|4038469|gb|AAC97380.1| (AF109910) histone H3
            [Porteresia coarctata] >gi|4490754|emb|CAB38916.1| (AL035708)
            histone H3.3 [Arabidopsis thaliana] >gi|4490755|emb|CAB38917.1|
            (AL035708) Histon H3 [Arabidopsis thaliana]
            >gi|6006364|dbj|BAA84794.1| (AP000559) EST D15300(C0425)
            corresponds to a region of the predicted gene.; Similar to histone
            H3 (AB015760) [Oryza sativa] >gi|7271058|emb|CAB80666.1| (AL161596)
            histone H3.3 [Arabidopsis thaliana] >gi|7271059|emb|CAB80667.1|
            (AL161596) Histon H3 [Arabidopsis thaliana]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   Entrez               methylation site                         5
   Entrez               methylation site                         10
   Entrez               acetylation site                         15
   Entrez               methylation site                         15
   Entrez               acetylation site                         19
   Entrez               methylation site                         19
   Entrez               acetylation site                         24
   Entrez               methylation site                         24
   Entrez               methylation site                         28
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 615 (216.5 bits), Expect = 4.1e-59, P = 4.1e-59
 Identities = 123/127 (96%), Positives = 124/127 (97%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAPTTGGV KPHRYRPGTVALREIRKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|1053047|gb|AAB03538.1|  (U38425) histone H3 [Glycine max]
            >gi|1053049|gb|AAB03539.1| (U38426) histone H3 [Glycine max]
            >gi|1053051|gb|AAB03540.1| (U38427) histone H3 [Glycine max]
            Length = 127

Frame  2 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 127
                       0                  50                100

  Plus Strand HSPs:

 Score = 607 (213.7 bits), Expect = 2.9e-58, P = 2.9e-58
 Identities = 121/124 (97%), Positives = 122/124 (98%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAPTTGGV KPHRYRPGTVALREIRKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT+MPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTMMPK 123

Query:   440 DIQL 451
             DIQL
Sbjct:   124 DIQL 127


to_Entrezto_Relatedto_Related >gi|1053057|gb|AAB03542.1|  (U38422) histone H3 [Triticum aestivum]
            Length = 127

Frame  2 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 127
                       0                  50                100

  Plus Strand HSPs:

 Score = 605 (213.0 bits), Expect = 4.7e-58, P = 4.7e-58
 Identities = 121/124 (97%), Positives = 121/124 (97%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAPTTGGV KPHRYRPGTVALRE RKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALRETRKYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQL 451
             DIQL
Sbjct:   124 DIQL 127


to_Entrezto_Relatedto_Related >gi|1053045|gb|AAB03537.1|  (U38424) histone H3 [Glycine max]
            Length = 127

Frame  2 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 127
                       0                  50                100

  Plus Strand HSPs:

 Score = 602 (211.9 bits), Expect = 9.7e-58, P = 9.7e-58
 Identities = 121/124 (97%), Positives = 121/124 (97%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSA TTGGV KPHRYRPGTVALREIRKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSASTTGGVKKPHRYRPGTVALREIRKYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQL 451
             DIQL
Sbjct:   124 DIQL 127


to_Entrezto_Relatedto_Related >gi|1053059|gb|AAB03543.1|  (U38423) histone H3 [Triticum aestivum]
            Length = 127

Frame  2 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 127
                       0                  50                100

  Plus Strand HSPs:

 Score = 597 (210.2 bits), Expect = 3.3e-57, P = 3.3e-57
 Identities = 119/124 (95%), Positives = 121/124 (97%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAPTTGGV KPHRYRPGTVALREIRKYQKST+LLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRL+REIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN CAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLLREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNPCAIHAKRVTIMPK 123

Query:   440 DIQL 451
             DIQL
Sbjct:   124 DIQL 127


to_Entrezto_Relatedto_Related >gi|2119013|pir||I49395  histone H3.2 protein - shrew mouse
            >gi|515005|emb|CAA56575.1| (X80327) histone H3.2 protein [Mus
            pahari]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 594 (209.1 bits), Expect = 6.8e-57, P = 6.8e-57
 Identities = 118/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAPTTGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQL  +
Sbjct:   124 DIQLVRR 130


to_Entrezto_Related >gi|7305139  ref|NP_038576.1| histone gene complex 1
            >gi|122068|sp|P16105|H32_BOVIN HISTONE H3 (H3.2)
            >gi|86308|pir||JS0690 histones H3.II and H3.III - chicken
            >gi|102611|pir||S11315 histone H3 - polychaete (Platynereis
            dumerilii) >gi|103050|pir||S09655 histone H3 - fruit fly
            (Drosophila hydei) >gi|109978|pir||JH0304 histone H3.2 - mouse
            >gi|1078925|pir||A56618 histone H3 - spoonworm (Urechis caupo)
            >gi|1085856|pir||A56654 histone H3 - Tigriopus californicus
            >gi|2119005|pir||A56580 histone H3 - midge (Chironomus thummi
            thummi) >gi|2119019|pir||I50460 H3 histone - muscovy duck
            >gi|2119020|pir||I51448 histone H3 - African clawed frog
            >gi|2119021|pir||I49397 histone H3.2 protein - shrew mouse
            >gi|2144743|pir||HSCH3 histone H3 - chicken >gi|6980691|pdb|2HIO|C
            Chain C, Histone Octamer (Chicken), Chromosomal Protein
            >gi|7767074|pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome
            Core Particle At 2.5 A Resolution >gi|7767078|pdb|1EQZ|G Chain G,
            X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution
            >gi|7083|emb|CAA39771.1| (X56335) histone H3 [Chironomus thummi]
            >gi|7433|emb|CAA36805.1| (X52576) histone H3 [Drosophila hydei]
            >gi|7439|emb|CAA34919.1| (X17072) histone H3 [Drosophila hydei]
            >gi|9821|emb|CAA37417.1| (X53330) H3 protein (AA 1 - 136)
            [Platynereis dumerilii] >gi|10615|emb|CAA36638.1| (X52393) histone
            H3 [Tigriopus californicus] >gi|10863|emb|CAA41696.1| (X58895) H3
            histone [Urechis caupo] >gi|51319|emb|CAA25840.1| (X01685) histone
            H3 (H3.2) (aa 1-136) [Mus musculus] >gi|62734|emb|CAA32855.1|
            (X14732) H3 histone (AA 1-136) [Cairina moschata]
            >gi|62735|emb|CAA32856.1| (X14732) H3 histone (AA 1-136) [Cairina
            moschata] >gi|63474|emb|CAA26138.1| (X02218) H3 (aa 1-136) [Gallus
            gallus] >gi|63482|emb|CAA44180.1| (X62291) histone H3-IV [Gallus
            gallus] >gi|63484|emb|CAA44181.1| (X62292) histone H3-V [Gallus
            gallus] >gi|64326|emb|CAA25529.1| (X01064) histone H3 [Oncorhynchus
            mykiss] >gi|64772|emb|CAA26813.1| (X03017) H3 (aa 1-136) [Xenopus
            laevis] >gi|64778|emb|CAA26818.1| (X03018) histone H3 (aa 1-136)
            [Xenopus laevis] >gi|64781|emb|CAA26890.1| (X03104) H3 (aa 1-135)
            [Xenopus laevis] >gi|161895|gb|AAC41552.1| (M84797) histone H3
            [Tigriopus californicus] >gi|211857|gb|AAA48796.1| (M61154) histone
            H3 [Gallus gallus] >gi|214279|gb|AAA49765.1| (M21286) histone H3
            [Xenopus laevis] >gi|297563|emb|CAA51324.1| (X72803) histone H3
            [Chironomus thummi] >gi|387183|gb|AAA37764.1| (M33989) histone H3.2
            [Mus musculus] >gi|387195|gb|AAA37810.1| (M32459) histone H3 [Mus
            musculus] >gi|387197|gb|AAA37812.1| (M32461) histone H3 [Mus
            musculus] >gi|455387|gb|AAA49770.1| (M21287) histone H3 [Xenopus
            laevis] >gi|515836|emb|CAA56577.1| (X80328) histone H3 protein [Mus
            musculus] >gi|516331|emb|CAA56573.1| (X80326) histone H3.2 protein
            [Mus pahari] >gi|1458128|gb|AAB04760.1| (U62669) histone H3.2-F
            [Mus musculus] >gi|1458134|gb|AAB04764.1| (U62671) histone H3.2-B
            [Mus musculus] >gi|1458144|gb|AAB04771.1| (U62674) histone H3.2-615
            [Mus musculus] >gi|1458146|gb|AAB04772.1| (U62675) histone H3.2-616
            [Mus musculus] >gi|1493815|gb|AAC60003.1| (U37577) histone H3-VI
            [Gallus gallus] >gi|1493817|gb|AAC60004.1| (U37578) histone H3-VII
            [Gallus gallus] >gi|1493819|gb|AAC60005.1| (U37579) histone H3-VIII
            [Gallus gallus] >gi|2564107|gb|AAC15916.1| (AF007904) histone H3
            [Chaetopterus variopedatus] >gi|7415970|dbj|BAA93621.1| (AB019400)
            histone H3 [Drosophila melanogaster] >gi|7415972|dbj|BAA93622.1|
            (AB019401) histone H3 [Drosophila simulans]
            >gi|7415974|dbj|BAA93623.1| (AB019402) histone H3 [Drosophila
            sechellia] >gi|7415976|dbj|BAA93624.1| (AB019403) histone H3
            [Drosophila mauritiana] >gi|7415978|dbj|BAA93625.1| (AB019404)
            histone H3 [Drosophila teissieri] >gi|7415980|dbj|BAA93626.1|
            (AB019405) histone H3 [Drosophila yakuba]
            >gi|7415984|dbj|BAA93628.1| (AB019407) histone H3 [Drosophila
            orena]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 593 (208.7 bits), Expect = 8.7e-57, P = 8.7e-57
 Identities = 118/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|70743|pir||HSRK3  histone H3 - striped catshark >gi|70744|pir||HSTR3 histone
            H3, gonadal - rainbow trout >gi|70745|pir||HSFI3 histone H3 -
            smallmouth buffalo fish >gi|70746|pir||HSXL31 histone H3.1 -
            African clawed frog >gi|223453|prf||0806228A histone H3 [Gallus
            gallus] >gi|350633|prf||0710252A histone H3 [Homo sapiens]
            Length = 135

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:        _ ____ _  _           ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   Entrez               modified site: N6-methyllysine or N6,N6- 9
   Entrez               modified site: N6-methyllysine or N6,N6- 27
   Entrez               modified site: N6-methyllysine or N6,N6- 36
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    14..20
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 593 (208.7 bits), Expect = 8.7e-57, P = 8.7e-57
 Identities = 118/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     3 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 122

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   123 DIQLARR 129


to_Entrezto_Relatedto_Related >gi|103198|pir||S10097  histone H3 - fruit fly (Drosophila melanogaster)
            >gi|8070|emb|CAA32434.1| (X14215) H3 histone [Drosophila
            melanogaster]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 592 (208.4 bits), Expect = 1.1e-56, P = 1.1e-56
 Identities = 117/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKR+TIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRITIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|122085|sp|P05203|H3_MAIZE  HISTONE H3 >gi|81641|pir||S06250 histone H3 -
            Arabidopsis thaliana >gi|82482|pir||S04099 histone H3 (variant
            H3R-21) - rice >gi|1362194|pir||S57626 histone H3 - maize
            >gi|20251|emb|CAA31969.1| (X13678) histone H3 (AA 1-136) [Oryza
            sativa] >gi|20253|emb|CAA31970.1| (X13680) histone H3 (AA 1-136)
            [Oryza sativa] >gi|168493|gb|AAA33471.1| (M36658) histone H3 (H3C3)
            [Zea mays] >gi|168495|gb|AAA33472.1| (M13378) histone H3 [Zea mays]
            >gi|168497|gb|AAA33473.1| (M13379) histone H3 [Zea mays]
            >gi|168506|gb|AAA66265.1| (M35388) histone H3 [Zea mays]
            >gi|169655|gb|AAA33852.1| (M77493) histone H3 [Petroselinum
            crispum] >gi|169657|gb|AAA33853.1| (M77494) histone H3
            [Petroselinum crispum] >gi|169659|gb|AAA33854.1| (M77495) histone
            H3 [Petroselinum crispum] >gi|387565|gb|AAA32808.1| (M17130)
            histone H3 [Arabidopsis thaliana] >gi|387567|gb|AAA32809.1|
            (M17131) histone H3 [Arabidopsis thaliana]
            >gi|886738|emb|CAA59111.1| (X84377) histone 3 [Zea mays]
            >gi|1040764|gb|AAA79889.1| (M35387) histone H3 [Arabidopsis
            thaliana] >gi|1314779|gb|AAB67837.1| (U54827) histone H3 homolog
            [Brassica napus] >gi|1531754|emb|CAA57811.1| (X82414) Histone H3
            [Asparagus officinalis] >gi|1667592|gb|AAB18816.1| (U77296) histone
            3 [Oryza sativa] >gi|3249101|gb|AAC24084.1| (AC003114) Match to
            histone H3 gene gb|M17131 and gb|M35387 from A. thaliana.  ESTs
            gb|H76511 gb|H76255, gb|AA712452, gb|N65260 and gb|T42306 come from
            this gene. [Arabidopsis thaliana] >gi|5295939|dbj|BAA81840.1|
            (AB026295) ESTs C74053(E30274),D15300(C0425),AU030134(E50667)
            correspond to a region of the predicted gene.; Similar to Asparagus
            officinalis mRNA for Histone H3.(X82414) [Oryza sativa]
            >gi|5295940|dbj|BAA81841.1| (AB026295) ESTs
            C74053(E30274),D15300(C0425),AU030134(E50667) correspond to a
            region of the predicted gene.; Similar to Asparagus officinalis
            mRNA for Histone H3.(X82414) [Oryza sativa]
            >gi|7595794|gb|AAF64452.1|AF239930_1 (AF239930) histone H3
            [Euphorbia esula] >gi|7671463|emb|CAB89403.1| (AL353995) histone
            H3-like protein [Arabidopsis thaliana] >gi|7671464|emb|CAB89404.1|
            (AL353995) histone H3-like protein [Arabidopsis thaliana]
            >gi|7939509|dbj|BAA95712.1| (AB024028) histone H3-like protein
            [Arabidopsis thaliana] >gi|225459|prf||1303352A histone H3
            [Helicoverpa zea] >gi|225839|prf||1314298B histone H3 [Arabidopsis
            thaliana]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 592 (208.4 bits), Expect = 1.1e-56, P = 1.1e-56
 Identities = 119/127 (93%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHR+RPGTVALREIRKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Related >gi|4504281  ref|NP_003520.1| H3 histone family, member A >gi|4504285
            ref|NP_003522.1|| H3 histone family, member C >gi|4504287
            ref|NP_003523.1|| H3 histone family, member D >gi|4504289
            ref|NP_003524.1|| H3 histone family, member F >gi|4504291
            ref|NP_003525.1|| H3 histone family, member H >gi|4504293
            ref|NP_003526.1|| H3 histone family, member J >gi|4504295
            ref|NP_003527.1|| H3 histone family, member K >gi|4504297
            ref|NP_003528.1|| H3 histone family, member L
            >gi|122064|sp|P16106|H31_HUMAN HISTONE H3.1 >gi|90623|pir||S06755
            histone H3.1 - mouse >gi|1070597|pir||HSHU3 histone H3.1 - human
            >gi|2119009|pir||I57019 H3 histone - rat >gi|2119010|pir||I49398
            histone H3.1 protein - shrew mouse >gi|31982|emb|CAA40407.1|
            (X57128) histone H3 [Homo sapiens] >gi|32115|emb|CAA24952.1|
            (X00090) histone H3 [Homo sapiens] >gi|51317|emb|CAA25839.1|
            (X01684) histone H3 (H3.1) (aa 1-136) [Mus musculus]
            >gi|51327|emb|CAA34512.1| (X16496) H3.1 histone (AA 1-136) [Mus
            musculus] >gi|184070|gb|AAA63185.1| (M60746) histone H3.1 [Homo
            sapiens] >gi|310133|gb|AAA19824.1| (L19706) H3 histone [Rattus
            norvegicus] >gi|387196|gb|AAA37811.1| (M32460) histone H3 [Mus
            musculus] >gi|387198|gb|AAA37813.1| (M32462) histone H3 [Mus
            musculus] >gi|515008|emb|CAA56572.1| (X80325) histone 3.1 protein
            [Mus pahari] >gi|516241|emb|CAA56571.1| (X80324) histone H3.1
            protein [Mus pahari] >gi|559902|emb|CAA86403.1| (Z46261) histone
            H3a [Homo sapiens] >gi|1458132|gb|AAB04763.1| (U62670) histone
            H3.1-I [Mus musculus] >gi|1458136|gb|AAB04765.1| (U62672) histone
            H3.1-D [Mus musculus] >gi|1568561|emb|CAB02547.1| (Z80785) histone
            H3 [Homo sapiens] >gi|1568563|emb|CAB02548.1| (Z80786) histone H3
            [Homo sapiens] >gi|1749796|emb|CAB06030.1| (Z83735) histone H3
            [Homo sapiens] >gi|1749800|emb|CAB06032.1| (Z83737) histone H3
            [Homo sapiens] >gi|1894787|emb|CAA58540.1| (X83550) histone H3
            [Homo sapiens] >gi|2292937|emb|CAA72968.1| (Y12290) Histone H3 [Mus
            musculus] >gi|3080464|emb|CAB11424.1| (Z98744) histone H3 [Homo
            sapiens] >gi|3219592|emb|CAA15670.1| (AL009179) dJ97D16.6 (Histone
            H3.1) [Homo sapiens] >gi|4495075|emb|CAB39184.1| (AL031777)
            dJ34B20.3 (H3 Histone family, member H (H3/h, H3.1)) [Homo sapiens]
            >gi|4495077|emb|CAB39186.1| (AL031777) J34B20.18 (H3 Histone
            family, member I (H3/i)) [Homo sapiens] >gi|4495081|emb|CAB39191.1|
            (AL031777) dJ34B20.9 (Histone H3.1) [Homo sapiens]
            >gi|4495087|emb|CAB39198.1| (AL031777) dJ34B20.17 (novel H3 Histone
            family protein) [Homo sapiens]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 592 (208.4 bits), Expect = 1.1e-56, P = 1.1e-56
 Identities = 118/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|70749|pir||HSBO3  histone H3 - bovine >gi|3080462|emb|CAB11422.1| (Z98744)
            histone H3.1 [Homo sapiens] >gi|229423|prf||721930A histone H3 [Bos
            taurus]
            Length = 135

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:      _ _ ______              ____                   __ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   Entrez               binding site: phosphate (Arg) (covalent) 2
   Entrez               binding site: phosphate (Arg) (covalent) 128
   Entrez               binding site: phosphate (Arg) (covalent) 129
   Entrez               binding site: phosphate (Arg) (covalent) 131
   Entrez               modified site: N6-methyllysine, N6,N6-di 9
   Entrez               modified site: N6-methyllysine, N6,N6-di 27
   Entrez               binding site: acetyl (Lys) (covalent) (p 14
   Entrez               binding site: acetyl (Lys) (covalent) (p 23
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    14..20
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 592 (208.4 bits), Expect = 1.1e-56, P = 1.1e-56
 Identities = 118/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     3 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 122

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   123 DIQLARR 129


to_Entrezto_Relatedto_Related >gi|386772|gb|AAA52651.1|  (M26150) histone H3 [Homo sapiens]
            Length = 135

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100

  Plus Strand HSPs:

 Score = 592 (208.4 bits), Expect = 1.1e-56, P = 1.1e-56
 Identities = 118/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|122087|sp|P02300|H3_PEA  HISTONE H3 >gi|81849|pir||S04520 histone H3 (clone
            pH3c-1) - alfalfa >gi|82609|pir||A26014 histone H3 - wheat
            >gi|19607|emb|CAA31964.1| (X13673) histone H3 (AA 1-136) [Medicago
            sativa] >gi|19609|emb|CAA31965.1| (X13674) histone H3 (AA 1-136)
            [Medicago sativa] >gi|21797|emb|CAA25451.1| (X00937) H3 histone
            [Triticum aestivum] >gi|488565|gb|AAB49545.1| (U09459) histone H3.1
            [Medicago sativa] >gi|2565419|gb|AAB81995.1| (AF026803) histone H3
            [Onobrychis viciifolia]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   Entrez               methylation site                         5
   Entrez               methylation site                         10
   Entrez               acetylation site                         15
   Entrez               methylation site                         15
   Entrez               acetylation site                         19
   Entrez               methylation site                         19
   Entrez               acetylation site                         24
   Entrez               methylation site                         28
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 591 (208.0 bits), Expect = 1.4e-56, P = 1.4e-56
 Identities = 119/127 (93%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHR+RPGTVALREIRKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|70753|pir||HSPM3  histone H3 - garden pea >gi|82610|pir||S00373 histone H3 -
            wheat
            Length = 135

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:          ____                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    14..20
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 591 (208.0 bits), Expect = 1.4e-56, P = 1.4e-56
 Identities = 119/127 (93%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHR+RPGTVALREIRKYQKSTELLI
Sbjct:     3 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 122

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   123 DIQLARR 129


to_Entrezto_Relatedto_Related >gi|90622|pir||S06743  histone H3 - mouse >gi|51301|emb|CAA34274.1| (X16148) H3
            protein (AA 1-136) [Mus musculus] >gi|211859|gb|AAA48797.1|
            (M61155) histone H3 [Gallus gallus]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 590 (207.7 bits), Expect = 1.8e-56, P = 1.8e-56
 Identities = 117/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCA+HAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAMHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|484441|pir||JN0687  histone H3 - sea squirt (Styela plicata)
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 590 (207.7 bits), Expect = 1.8e-56, P = 1.8e-56
 Identities = 117/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS +V+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSSVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|1708108|sp|Q10453|H33_CAEEL  HISTONE H3.3 >gi|7439813|pir||T16361
            hypothetical protein F45E1.6 - Caenorhabditis elegans
            >gi|860702|gb|AAB04902.1| (U28732) similar to histone H3
            [Caenorhabditis elegans]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 590 (207.7 bits), Expect = 1.8e-56, P = 1.8e-56
 Identities = 118/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAPTTGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|122088|sp|P02298|H3_PSAMI  HISTONE H3, EMBRYONIC >gi|85313|pir||S01198
            histone H3 - starfish (Dermasterias imbricata)
            >gi|85320|pir||S01196 histone H3 - starfish (Pisaster brevispinus)
            >gi|85324|pir||S01197 histone H3 - starfish (Pisaster ochraceus)
            >gi|103583|pir||S20678 histone H3 - starfish (Solaster stimpsoni)
            >gi|103606|pir||S20669 histone H3 - starfish (Pycnopodia
            helianthoides) >gi|7468|emb|CAA30388.1| (X07505) histone H3 (AA
            1-36) [Dermasterias imbricata] >gi|9613|emb|CAA25242.1| (X00593) H3
            [Lytechinus pictus] >gi|9615|emb|CAA25262.1| (X00628) H3 protein
            [Lytechinus pictus] >gi|9790|emb|CAA38050.1| (X54112) H3 histone
            [Pisaster brevispinus] >gi|9792|emb|CAA30387.1| (X07504) histone H3
            (AA 1-36) [Pisaster brevispinus] >gi|9991|emb|CAA38054.1| (X54114)
            histone H3 [Pycnopodia helianthoides] >gi|10021|emb|CAA24375.1|
            (V01143) reading frame for H3 [Psammechinus miliaris]
            >gi|10035|emb|CAA25632.1| (X01345) histone H3 (aa 1-135)
            [Psammechinus miliaris] >gi|10046|emb|CAA38052.1| (X54113) histone
            H3 [Pisaster ochraceus] >gi|10048|emb|CAA30386.1| (X07503) histone
            H3 (AA 1-36) [Pisaster ochraceus] >gi|10340|emb|CAA38056.1|
            (X54115) histone H3 [Solaster stimpsoni] >gi|159965|gb|AAA29441.1|
            (M36920) histone H3 [Paracentrotus lividus]
            >gi|159970|gb|AAA65843.1| (M25281) histone H3 [Paracentrotus
            lividus] >gi|161387|gb|AAA30026.1| (M10645) histone H3
            [Psammechinus miliaris] >gi|161401|gb|AAB59206.1| (J01184) histone
            H3 [Psammechinus miliaris] >gi|161481|gb|AAA30053.1| (M36921)
            histone H3 [Strongylocentrotus droebachiensis]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 589 (207.3 bits), Expect = 2.3e-56, P = 2.3e-56
 Identities = 117/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Related >gi|70747|pir||HSUR3M  histone H3, embryonic - sea urchin (Psammechinus
            miliaris)
            Length = 135

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:          ____                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    14..20
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 589 (207.3 bits), Expect = 2.3e-56, P = 2.3e-56
 Identities = 117/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     3 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 122

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   123 DIQLARR 129


to_Entrezto_Relatedto_Related >gi|122083|sp|P08903|H3_ENCAL  HISTONE H3 >gi|70751|pir||HSEAH3 histone H3 -
            Altenstein's bread tree >gi|224865|prf||1202289A histone H3
            [Encephalartos sp.]
            Length = 135

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   Entrez               methylation site                         4
   Entrez               methylation site                         9
   Entrez               methylation site                         27
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    14..20
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 589 (207.3 bits), Expect = 2.3e-56, P = 2.3e-56
 Identities = 118/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHR+RPGTVALREIR+YQKSTELLI
Sbjct:     3 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTELLI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 122

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   123 DIQLARR 129


to_Entrezto_Relatedto_Related >gi|122079|sp|P22843|H3_ACRFO  HISTONE H3 >gi|84397|pir||JQ0757 histone H3 -
            staghorn coral >gi|155640|gb|AAA64958.1| (M60509) H3 [Acropora
            formosa] >gi|166308|gb|AAC37352.1| (L11067) histone H3 [Acropora
            formosa] >gi|455649|gb|AAB28736.1| (S67324) histone H3, H3
            [Acropora formosa=coral, sperms, Peptide, 136 aa]
            >gi|450044|prf||1920342A histone H3 [Acropora formosa]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 589 (207.3 bits), Expect = 2.3e-56, P = 2.3e-56
 Identities = 118/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAA KSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|422606|pir||S32638  histone H3.l - African clawed frog
            >gi|288992|emb|CAA51455.1| (X72950) histone H3 [Xenopus laevis]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 589 (207.3 bits), Expect = 2.3e-56, P = 2.3e-56
 Identities = 117/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLC IHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCGIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|2119011|pir||I48092  histone H3.2 - long-tailed hamster
            >gi|516304|emb|CAA56580.1| (X80330) histone H3.2 [Cricetulus
            longicaudatus]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___     _____________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   DOMO                 DM01061: HISTONEH3                       38..136
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 589 (207.3 bits), Expect = 2.3e-56, P = 2.3e-56
 Identities = 117/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTV LREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVTLREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|7415982|dbj|BAA93627.1|  (AB019406) histone H3 [Drosophila erecta]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 589 (207.3 bits), Expect = 2.3e-56, P = 2.3e-56
 Identities = 117/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQT R STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTTRKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|166384|gb|AAA32655.1|  (M35867) histone H3 (H3-1.1) [Medicago sativa]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 587 (206.6 bits), Expect = 3.8e-56, P = 3.8e-56
 Identities = 118/127 (92%), Positives = 120/127 (94%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHR+RPGTVALREIRKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS  V ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSVVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|211855|gb|AAA48795.1|  (J00869) histone H3 [Gallus gallus]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 587 (206.6 bits), Expect = 3.8e-56, P = 3.8e-56
 Identities = 117/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIA DFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAXDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|488571|gb|AAB36495.1|  (U09462) histone H3.2 [Medicago sativa]
            Length = 127

Frame  2 hits (HSPs):   ________________________________________________  
                        __________________________________________________
Database sequence:     |                   |                  |           | 127
                       0                  50                100

  Plus Strand HSPs:

 Score = 587 (206.6 bits), Expect = 3.8e-56, P = 3.8e-56
 Identities = 117/120 (97%), Positives = 118/120 (98%), Frame = +2

Query:   101 STGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLIRKLPFQR 280
             STGGKAPRKQLATKAARKSAPTTGGV KPHRYRPGTVALREIRKYQKSTELLIRKLPFQR
Sbjct:     2 STGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQR 61

Query:   281 LVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAXK 460
             LVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA +
Sbjct:    62 LVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 121


to_Entrezto_Relatedto_Related >gi|1362108|pir||S56707  histone H3 homolog - common tobacco
            Length = 136

Frame  2 hits (HSPs):    ______________________________________________   
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 587 (206.6 bits), Expect = 3.8e-56, P = 3.8e-56
 Identities = 118/124 (95%), Positives = 119/124 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHR+RPGTVALREIRKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQL 451
             DIQL
Sbjct:   124 DIQL 127


to_Entrezto_Relatedto_Related >gi|7510049|pir||T27037  hypothetical protein Y49E10.6 - Caenorhabditis elegans
            >gi|3979986|emb|CAB11546.1| (Z98866) predicted using
            Genefinder~similar to Core histone H2A/H2B/H3/H4~cDNA EST
            EMBL:D71193 comes from this gene; cDNA EST yk477a9.3 comes from
            this gene~cDNA EST CEESG32RD comes from this gene; cDNA EST
            yk201g11.3 comes from this gene~cDNA EST yk33>
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 587 (206.6 bits), Expect = 3.8e-56, P = 3.8e-56
 Identities = 117/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAPTTGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             D+QLA +
Sbjct:   124 DMQLARR 130


to_Entrezto_Related >gi|4504279  ref|NP_002098.1| H3 histone, family 3A >gi|4885385
            ref|NP_005315.1|| H3 histone, family 3B (H3.3B) >gi|6680159
            ref|NP_032236.1|| H3 histone, family 3A >gi|6680161
            ref|NP_032237.1|| H3 histone, family 3B
            >gi|122075|sp|P06351|H33_HUMAN HISTONE H3.3 (H3.B) (H3.3Q)
            >gi|90043|pir||S10168 histone H3.3A - rabbit >gi|90624|pir||S04186
            histone H3.3 - mouse >gi|423678|pir||S34185 histone H3 - rat
            >gi|476852|pir||A45941 histone H3 - Atlantic surf clam
            >gi|1070596|pir||HSHU33 histone H3.3 - human
            >gi|2119006|pir||S61220 histone H3.3 - fruit fly (Drosophila
            melanogaster) >gi|2119007|pir||S61215 histone H3.3 - fruit fly
            (Drosophila melanogaster) >gi|2119008|pir||S20109 histone H3.3Q -
            fruit fly (Drosophila melanogaster) >gi|2119022|pir||I50245 histone
            H3.3B - chicken >gi|2119023|pir||S61218 histone H3.3 - fruit fly
            (Drosophila hydei) >gi|2119024|pir||S61214 histone H3.3 - fruit fly
            (Drosophila hydei) >gi|1568|emb|CAA36179.1| (X51897) H3.3A histone
            (AA 1-136) [Oryctolagus cuniculus] >gi|8046|emb|CAA37819.1|
            (X53822) Histone H3.3Q [Drosophila melanogaster]
            >gi|51198|emb|CAA31940.1| (X13605) Histone H3.3 (AA 1 - 136) [Mus
            musculus] >gi|63480|emb|CAA68458.1| (Y00392) histone H3.3B (AA 1 -
            136) [Gallus gallus] >gi|161190|gb|AAA29965.1| (M17876) histone H3
            [Spisula solidissima] >gi|211853|gb|AAA48794.1| (M11393) histone
            3.3 [Gallus gallus] >gi|306848|gb|AAA52653.1| (M11354) H3.3 histone
            [Homo sapiens] >gi|306849|gb|AAA52654.1| (M11353) H3.3 histone
            [Homo sapiens] >gi|313319|emb|CAA52035.1| (X73683) histon H3
            [Rattus norvegicus] >gi|761716|emb|CAA88778.1| (Z48950) histone
            H3.3 [Homo sapiens] >gi|963024|emb|CAA57078.1| (X81206) histone
            H3.3 [Drosophila hydei] >gi|963026|emb|CAA57081.1| (X81208) histone
            H3.3 [Drosophila hydei] >gi|963029|emb|CAA57080.1| (X81207) histone
            H3.3 [Drosophila melanogaster] >gi|963031|emb|CAA57077.1| (X81205)
            histone H3.3 [Drosophila melanogaster] >gi|1006654|emb|CAA57712.1|
            (X82257) histone H3.3A variant [Drosophila melanogaster]
            >gi|1838986|emb|CAB06625.1| (Z85979) histone H3.3A [Mus musculus]
            >gi|7291014|gb|AAF46452.1| (AE003446) His3.3B gene product
            [Drosophila melanogaster] >gi|7296940|gb|AAF52213.1| (AE003608)
            His3.3A gene product [Drosophila melanogaster]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 586 (206.3 bits), Expect = 4.8e-56, P = 4.8e-56
 Identities = 117/127 (92%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP+TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|122090|sp|P08437|H3_VOLCA  HISTONE H3 >gi|81287|pir||S00940 histone H3 -
            Volvox carteri >gi|2119017|pir||S59581 histone H3 (clones CH-II and
            CH-III) - Chlamydomonas reinhardtii >gi|21985|emb|CAA30035.1|
            (X06963) put. histone H3 [Volvox carteri] >gi|21988|emb|CAA30037.1|
            (X06964) put. histone H3 [Volvox carteri] >gi|571470|gb|AAA98444.1|
            (U16724) histone H3 [Chlamydomonas reinhardtii]
            >gi|571475|gb|AAA98448.1| (U16725) histone H3 [Chlamydomonas
            reinhardtii]
            Length = 135

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..133
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     32..53
   PRINTS               4: Histone H3 motif IV - 2      56..73
   PRINTS               5: Histone H3 motif V - 2       78..96
   PRINTS               6: Histone H3 motif VI - 2      96..112
   PRINTS               7: Histone H3 motif VII - 2     112..133
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..57
   PRODOM               PD000978: H3(15) H32(5) H33(4)           59..133
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 586 (206.3 bits), Expect = 4.8e-56, P = 4.8e-56
 Identities = 119/127 (93%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARK+ P TGGV KPHRYRPGTVALREIRKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 122

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   123 DIQLARR 129


to_Entrezto_Relatedto_Related >gi|122082|sp|P02299|H3_DROME  HISTONE H3
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 586 (206.3 bits), Expect = 4.8e-56, P = 4.8e-56
 Identities = 116/127 (91%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLV LFEDTNLCAIHAKR+TIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRITIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|2116601|dbj|BAA20144.1|  (AB003784) Histone H3 [Drosophila simulans]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 585 (205.9 bits), Expect = 6.2e-56, P = 6.2e-56
 Identities = 116/127 (91%), Positives = 120/127 (94%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKS P TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSVPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+E YLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASETYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|2144744|pir||HSKW3  histone H3 - Caenorhabditis elegans
            >gi|6752|emb|CAA33644.1| (X15634) Histone protein [Caenorhabditis
            elegans] >gi|1326373|gb|AAB00650.1| (U58750) Similar to Histone
            [Caenorhabditis elegans] >gi|1458293|gb|AAB04852.1| (U64843)
            Similar to histone H3 [Caenorhabditis elegans]
            >gi|1458298|gb|AAB04857.1| (U64843) Similar to histone H3
            [Caenorhabditis elegans] >gi|1458312|gb|AAC48033.1| (U64845)
            Similar to histone H3 [Caenorhabditis elegans]
            >gi|2935373|gb|AAC05102.1| (AF047656) C. elegans histone H3
            (SP:P08898) [Caenorhabditis elegans] >gi|3873702|emb|CAA97411.1|
            (Z73102) predicted using Genefinder~Similarity to C.elegans histone
            H3 (SW:H3_CAEEL) [Caenorhabditis elegans]
            >gi|3875619|emb|CAB04057.1| (Z81495) predicted using
            Genefinder~similar to Core histones H2A, H2B, H3 and H4
            [Caenorhabditis elegans] >gi|3876195|emb|CAA92733.1| (Z68336)
            predicted using Genefinder~similar to histone H3 [Caenorhabditis
            elegans] >gi|3877574|emb|CAB05209.1| (Z82271) predicted using
            Genefinder; Similarity to Human histone H3 (SW:P16106)
            [Caenorhabditis elegans] >gi|3879732|emb|CAB07653.1| (Z93388)
            predicted using Genefinder~similar to histone H3~cDNA EST yk229g2.3
            comes from this gene~cDNA EST yk341a3.5 comes from this gene~cDNA
            EST yk344e7.5 comes from this gene~cDNA EST EMBL:D73816 comes from
            this gene~cDNA EST EMBL:D74359 comes from >
            >gi|3881582|emb|CAB05831.1| (Z83245) predicted using Genefinder;
            similar to histone H3 [Caenorhabditis elegans]
            >gi|3881584|emb|CAB05833.1| (Z83245) predicted using Genefinder;
            similar to histone H3 [Caenorhabditis elegans]
            >gi|3881585|emb|CAB05834.1| (Z83245) predicted using Genefinder;
            similar to histone H3; cDNA EST yk213a4.3 comes from this gene;
            cDNA EST yk413g10.5 comes from this gene [Caenorhabditis elegans]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:       _ _ _____   _          ____ _                    
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   Entrez               binding site: acetyl (Lys) (covalent) (p 5
   Entrez               binding site: acetyl (Lys) (covalent) (p 15
   Entrez               binding site: acetyl (Lys) (covalent) (p 24
   Entrez               modified site: N6-methyllysine or N6,N6- 10
   Entrez               modified site: N6-methyllysine (Lys) (pa 28
   Entrez               modified site: N6-methyllysine (Lys) (pa 37
   Entrez               modified site: N6-methyllysine (Lys) (pa 80
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 584 (205.6 bits), Expect = 7.9e-56, P = 7.9e-56
 Identities = 116/127 (91%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP +GGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             R+ PFQRLVREIAQDFKTDLRFQS AV+ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RRAPFQRLVREIAQDFKTDLRFQSSAVMALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|484530|pir||JQ1983  H3.3 like histone MH921 - mouse
            Length = 135

Frame  2 hits (HSPs):   _______________________________________________   
Annotated Domains:          ____                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    14..20
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 584 (205.6 bits), Expect = 7.9e-56, P = 7.9e-56
 Identities = 116/125 (92%), Positives = 121/125 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP+TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     3 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCA+HAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAVHAKRVTIMPK 122

Query:   440 DIQLA 454
             DIQLA
Sbjct:   123 DIQLA 127


to_Entrezto_Relatedto_Related >gi|122070|sp|P08860|H32_ORYSA  HISTONE H3 >gi|82483|pir||A25564 histone H3 -
            rice >gi|169793|gb|AAA33907.1| (M15664) histone 3 [Oryza sativa]
            >gi|940018|gb|AAA74190.1| (U25664) histone H3 [Oryza sativa]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 583 (205.2 bits), Expect = 1.0e-55, P = 1.0e-55
 Identities = 117/127 (92%), Positives = 120/127 (94%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHR+RPGTVALREIRKYQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQ+ AV ALQEAAE YLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQTSAVRALQEAAERYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|161319|gb|AAA30003.1|  (J01175) histone H3 [Lytechinus pictus]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 583 (205.2 bits), Expect = 1.0e-55, P = 1.0e-55
 Identities = 116/127 (91%), Positives = 120/127 (94%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTEL I
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELFI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTELRFQSSAVMALQEAREAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|2119018|pir||S59592  histone H3 (clone CH-I) - Chlamydomonas reinhardtii
            >gi|576633|gb|AAA98455.1| (U16825) histone H3 [Chlamydomonas
            reinhardtii]
            Length = 135

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 583 (205.2 bits), Expect = 1.0e-55, P = 1.0e-55
 Identities = 118/127 (92%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARK+ P TGGV KPHRYRPGTVALREIRKYQKSTEL+I
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 122

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   123 DIQLARR 129


to_Entrezto_Related >gi|4504283  ref|NP_003521.1| H3 histone family, member B
            >gi|1568559|emb|CAB02546.1| (Z80784) histone H3 [Homo sapiens]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 583 (205.2 bits), Expect = 1.0e-55, P = 1.0e-55
 Identities = 117/127 (92%), Positives = 120/127 (94%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA EA LVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEATLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|1079199|pir||S50140  histone H3.3 - sea urchin (Paracentrotus lividus)
            >gi|557666|emb|CAA53692.1| (X76081) H3.3 histone [Paracentrotus
            lividus] >gi|1091581|prf||2021267A histone H3.3 [Paracentrotus
            lividus]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 582 (204.9 bits), Expect = 1.3e-55, P = 1.3e-55
 Identities = 116/127 (91%), Positives = 122/127 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP+TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKT+LRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTELRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|122089|sp|P06352|H3_STRPU  HISTONE H3, EMBRYONIC >gi|10258|emb|CAA27582.1|
            (X03952) histone H3 (aa 1-136) [Strongylocentrotus purpuratus]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 581 (204.5 bits), Expect = 1.6e-55, P = 1.6e-55
 Identities = 116/127 (91%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Related >gi|70748|pir||HSUR3P  histone H3, embryonic - sea urchin (Strongylocentrotus
            purpuratus)
            Length = 135

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:          ____                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    14..20
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 581 (204.5 bits), Expect = 1.6e-55, P = 1.6e-55
 Identities = 116/127 (91%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     3 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLV LFEDTNLCAIHAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPK 122

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   123 DIQLARR 129


to_Entrezto_Relatedto_Related >gi|7522681|gb|AAB27669.2|  (S64499) H3 histone [Styela plicata]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 581 (204.5 bits), Expect = 1.6e-55, P = 1.6e-55
 Identities = 115/127 (90%), Positives = 120/127 (94%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS +V+ALQEA+E YLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSSSVMALQEASERYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQL  +
Sbjct:   124 DIQLGRR 130


to_Entrezto_Relatedto_Related >gi|2119012|pir||I50244  histone 3.3A - chicken >gi|211851|gb|AAA48793.1|
            (M11667) histone 3.3A [Gallus gallus]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 580 (204.2 bits), Expect = 2.1e-55, P = 2.1e-55
 Identities = 116/127 (91%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR  TGGKAPRKQLATKAARKSAP+TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKFTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|6686276|sp|P08898|H3_CAEEL  HISTONE H3
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   Entrez               acetylation site                         5
   Entrez               acetylation site                         15
   Entrez               acetylation site                         24
   Entrez               methylation site                         10
   Entrez               methylation site                         28
   Entrez               methylation site                         37
   Entrez               methylation site                         80
   Entrez               methylation site: CARBOXY.               97
   PFAM                 histone: Core histone H2A/H2B/H3/H4      16..134
   PRINTS               1: Histone H3 motif I - 2       2..16
   PRINTS               2: Histone H3 motif II - 2      16..30
   PRINTS               3: Histone H3 motif III - 2     33..54
   PRINTS               4: Histone H3 motif IV - 2      57..74
   PRINTS               5: Histone H3 motif V - 2       79..97
   PRINTS               6: Histone H3 motif VI - 2      97..113
   PRINTS               7: Histone H3 motif VII - 2     113..134
   PRODOM               PD001230: H3(14) H32(5) H33(4)           12..58
   PRODOM               PD000978: H3(15) H32(5) H33(4)           60..134
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 580 (204.2 bits), Expect = 2.1e-55, P = 2.1e-55
 Identities = 115/127 (90%), Positives = 120/127 (94%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAARKSAP +GGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             R+ PFQRLVREIAQDFKTDLRFQS AV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    64 RRAPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|488573|gb|AAB36496.1|  (U09463) histone H3.2 [Medicago sativa]
            Length = 124

Frame  2 hits (HSPs):   ________________________________________________  
                        __________________________________________________
Database sequence:     |                   |                   |          | 124
                       0                  50                 100

  Plus Strand HSPs:

 Score = 578 (203.5 bits), Expect = 3.4e-55, P = 3.4e-55
 Identities = 115/118 (97%), Positives = 116/118 (98%), Frame = +2

Query:   107 GGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLV 286
             GGKAPRKQLATKAARKSAPTTGGV KPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLV
Sbjct:     1 GGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLV 60

Query:   287 REIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAXK 460
             REIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA +
Sbjct:    61 REIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 118


to_Entrezto_Related >gi|4504299  ref|NP_003484.1| H3 histone family, member T
            >gi|1362815|pir||S57473 histone H3 - human
            >gi|871260|emb|CAA90020.1| (Z49861) histone H3 [Homo sapiens]
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100

  Plus Strand HSPs:

 Score = 578 (203.5 bits), Expect = 3.4e-55, P = 3.4e-55
 Identities = 114/127 (89%), Positives = 119/127 (93%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATK ARKSAP TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRL+REIAQDFKTDLRFQS AV+ALQEA E+YLVGLFEDTNLC IHAKRVTIMPK
Sbjct:    64 RKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|85001|pir||JQ1343  histone H3.3 - fruit fly (Drosophila melanogaster)
            Length = 136

Frame  2 hits (HSPs):    _______________________________________________  
Annotated Domains:           ___                ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 136
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_1: Histone H3 signature 1.    15..21
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    67..75
__________________


  Plus Strand HSPs:

 Score = 576 (202.8 bits), Expect = 5.5e-55, P = 5.5e-55
 Identities = 115/127 (90%), Positives = 121/127 (95%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTAR STGGKAPRKQLATKAA KSAP+TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     4 TKQTARKSTGGKAPRKQLATKAAAKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 63

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI+PK
Sbjct:    64 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIIPK 123

Query:   440 DIQLAXK 460
             DIQLA +
Sbjct:   124 DIQLARR 130


to_Entrezto_Relatedto_Related >gi|484531|pir||JQ1984  H3.3 like histone MH321 - mouse
            Length = 135

Frame  2 hits (HSPs):   _______________________________________________   
Annotated Domains:                              ____                      
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100
__________________

Annotated Domains:
   PROSITE              HISTONE_H3_2: Histone H3 signature 2.    66..74
__________________


  Plus Strand HSPs:

 Score = 576 (202.8 bits), Expect = 5.5e-55, P = 5.5e-55
 Identities = 115/125 (92%), Positives = 120/125 (96%), Frame = +2

Query:    80 TKQTARXSTGGKAPRKQLATKAARKSAPTTGGVXKPHRYRPGTVALREIRKYQKSTELLI 259
             TKQTA  STGGKAPRK+LATKAARKSAP+TGGV KPHRYRPGTVALREIR+YQKSTELLI
Sbjct:     3 TKQTAHKSTGGKAPRKKLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 62

Query:   260 RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK 439
             RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct:    63 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 122

Query:   440 DIQLA 454
             DIQLA
Sbjct:   123 DIQLA 127


WARNING:  HSPs involving 208 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.97

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.349   0.155   0.565  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.340   0.150   0.511  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.351   0.158   0.611  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.347   0.151   0.529  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.337   0.145   0.490  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.333   0.142   0.462  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      315       291       10.  78 3  12 22  0.10    36
                                                    33  0.10    40
   +2      0      315       289       10.  78 3  12 22  0.10    36
                                                    33  0.10    40
   +1      0      316       291       10.  78 3  12 22  0.10    36
                                                    33  0.10    40
   -1      0      316       289       10.  78 3  12 22  0.10    36
                                                    33  0.10    40
   -2      0      315       290       10.  78 3  12 22  0.10    36
                                                    33  0.10    40
   -3      0      315       287       10.  78 3  12 22  0.10    36
                                                    33  0.099   40


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  258
  No. of states in DFA:  596 (59 KB)
  Total size of DFA:  294 KB (320 KB)
  Time to generate neighborhood:  0.03u 0.00s 0.03t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  387.26u 1.59s 388.85t  Elapsed: 00:02:57
  Total cpu time:  387.37u 1.66s 389.03t  Elapsed: 00:02:58
  Start:  Thu Oct  5 18:32:56 2000   End:  Thu Oct  5 18:35:54 2000

WARNINGS ISSUED:  2



Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000