Xylella fastidiosa 9a5c

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178039-178138 (1-100) 178139-178238 (101-200) 178239-178338 (201-300) 178339-178438 (301-400) 178439-178538 (401-500)
178539-178638 (501-600) 178639-178738 (601-700) 178739-178838 (701-800) 178839-178938 (801-900) 178939-179038 (901-1000)
179039-179138 (1001-1100) 179139-179238 (1101-1200) 179239-179338 (1201-1300) 179339-179438 (1301-1400) 179439-179538 (1401-1500)
[179539-179638 (1501-1600)] 179639-179738 (1601-1700) 179739-179838 (1701-1800) 179839-179938 (1801-1900) 179939-180038 (1901-2000)
180039-180138 (2001-2100) 180139-180238 (2101-2200) 180239-180338 (2201-2300) 180339-180438 (2301-2400) 180439-180538 (2401-2500)
180539-180638 (2501-2600) 180639-180738 (2601-2700) 180739-180804 (2701-2766)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
179539 rph hypothetical XF1505 ribonuclease PH
RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
genbank 15838106 NP_298794.1 241 1456113 1456838
179540 hypothetical XF1506 putative deoxyribonucleotide triphosphate pyrophosphatase
HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
genbank 15838107 NP_298795.1 204 1456919 1457533
179541 hypothetical XF1507 coproporphyrinogen III oxidase
catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
genbank 15838108 NP_298796.1 383 1457756 1458907
179542 hypothetical XF1508 hypothetical protein genbank 77747551 NP_298797.2 831 1458985 1461480
179543 hypothetical XF1509 hypothetical protein genbank 15838110 NP_298798.1 112 1461477 1461815
179544 hypothetical XF1510 proline imino-peptidase
similar to GI|4389343 (percent identity: 81 %/query alignment coverage: 99.7 %/subject alignment coverage: 99.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838111 NP_298799.1 313 1461898 1462839
179545 hypothetical XF1511 hypothetical protein genbank 15838112 NP_298800.1 54 1463052 1463216
179546 hypothetical XF1512 protoporphyrinogen oxidase
similar to SP|P37186 (percent identity: 45 %/query alignment coverage: 93.1 %/subject alignment coverage: 92.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838113 NP_298801.1 275 1463188 1464015
179547 hypothetical XF1513 hypothetical protein genbank 15838114 NP_298802.1 173 1464148 1464669
179548 hypothetical XF1514 hypothetical protein
similar to GI|3861000 (percent identity: 34 %/query alignment coverage: 97.4 %/subject alignment coverage: 95.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838115 NP_298803.1 303 1464666 1465577
179549 hypothetical XF1515 hypothetical protein genbank 15838116 NP_298804.1 64 1465617 1465811
179550 hypothetical XF1516 surface-exposed outer membrane protein
similar to GI|5453174 (percent identity: 28 %/query alignment coverage: 37.4 %/subject alignment coverage: 43.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838117 NP_298805.1 1004 1466282 1469296
179551 hypothetical XF1517 general secretory pathway protein E
similar to SP|P31742 (percent identity: 81 %/query alignment coverage: 90.9 %/subject alignment coverage: 99.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838118 NP_298806.1 583 1469537 1471288
179552 hypothetical XF1518 general secretory pathway protein F
similar to GI|155381 (percent identity: 66 %/query alignment coverage: 96.5 %/subject alignment coverage: 100.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838119 NP_298807.1 405 1471324 1472541
179553 hypothetical XF1519 general secretory pathway protein G precursor
similar to SP|P31734 (percent identity: 78 %/query alignment coverage: 85.5 %/subject alignment coverage: 98.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838120 NP_298808.1 165 1472695 1473192
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
179554 hypothetical XF1520 general secretory pathway protein H precursor
similar to GI|155383 (percent identity: 67 %/query alignment coverage: 86.9 %/subject alignment coverage: 86.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838121 NP_298809.1 168 1473198 1473704
179555 hypothetical XF1521 general secretory pathway protein I precursor
similar to SP|P31738 (percent identity: 55 %/query alignment coverage: 103.0 %/subject alignment coverage: 98.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838122 NP_298810.1 132 1473701 1474099
179556 hypothetical XF1522 hypothetical protein
similar to SP|P31740 (percent identity: 56 %/query alignment coverage: 98.1 %/subject alignment coverage: 96.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838123 NP_298811.1 208 1474096 1474722
179557 hypothetical XF1523 general secretory pathway protein K
similar to SP|P34026 (percent identity: 60 %/query alignment coverage: 101.4 %/subject alignment coverage: 100.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 54
genbank 15838124 NP_298812.1 281 1474722 1475567
179558 hypothetical XF1524 general secretory pathway protein L
similar to SP|P34027 (percent identity: 60 %/query alignment coverage: 97.9 %/subject alignment coverage: 100.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838125 NP_298813.1 384 1475540 1476694
179559 hypothetical XF1525 hypothetical protein
similar to SP|P29039 (percent identity: 70 %/query alignment coverage: 91.4 %/subject alignment coverage: 81.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838126 NP_298814.1 210 1476675 1477307
179560 hypothetical XF1526 hypothetical protein
similar to SP|P29040 (percent identity: 53 %/query alignment coverage: 99.2 %/subject alignment coverage: 98.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 39
genbank 15838127 NP_298815.1 255 1477297 1478064
179561 hypothetical XF1527 general secretory pathway protein D precursor
similar to SP|P29041 (percent identity: 68 %/query alignment coverage: 100.1 %/subject alignment coverage: 102.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838128 NP_298816.1 775 1478109 1480436
179562 hypothetical XF1528 hypothetical protein genbank 15838129 NP_298817.1 68 1481036 1481242
179563 hypothetical XF1529 surface protein
similar to GI|1666683 (percent identity: 22 %/query alignment coverage: 100.0 %/subject alignment coverage: 87.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838130 NP_298818.1 2059 1481230 1487409
179564 hypothetical XF1530 subunit C of alkyl hydroperoxide reductase
similar to SP|P19479 (percent identity: 70 %/query alignment coverage: 90.8 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838131 NP_298819.1 206 1487748 1488368
179565 hypothetical XF1531 subunit F of alkyl hydroperoxide reductase
similar to SP|O06465 (percent identity: 77 %/query alignment coverage: 93.0 %/subject alignment coverage: 100.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838132 NP_298820.1 571 1488446 1490161
179566 hypothetical XF1532 oxidative stress transcriptional regulator
similar to GI|2098748 (percent identity: 81 %/query alignment coverage: 93.2 %/subject alignment coverage: 96.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838133 NP_298821.1 325 1490224 1491201
179567 hypothetical XF1533 hypothetical protein
similar to SP|P76256 (percent identity: 43 %/query alignment coverage: 98.7 %/subject alignment coverage: 97.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838134 NP_298822.1 229 1491327 1492016
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
179568 hypothetical XF1534 50S ribosomal protein L31
RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponentia
genbank 15838135 NP_298823.1 80 1492333 1492575
179569 hypothetical XF1535 citrate synthase
Catalyzes the first step in the citric acid cycle. Oxaloacetate and acetyl-CoA bind to citrate synthase, which then catalyzes the reaction which joins the two compounds together
genbank 15838136 NP_298824.1 429 1492803 1494092
179570 hypothetical XF1536 30S ribosomal protein S9
Forms a direct contact with the tRNA during translation
genbank 15838137 NP_298825.1 130 1494311 1494703
179571 hypothetical XF1537 50S ribosomal protein L13
L13 is associated with the antitermination complex
genbank 15838138 NP_298826.1 142 1494708 1495136
179572 hypothetical XF1538 ubiquinone biosynthesis protein
similar to SP|Q63619 (percent identity: 29 %/query alignment coverage: 89.9 %/subject alignment coverage: 79.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 189
genbank 77747552 NP_298827.2 217 1495357 1496010
179573 hypothetical XF1539 S-adenosylmethionine decarboxylase proenzyme
S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
genbank 15838140 NP_298828.1 264 1496178 1496972
179574 hypothetical XF1540 transcriptional regulator (Crp/Fnr family)
similar to SP|P22260 (percent identity: 85 %/query alignment coverage: 100.4 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 210
genbank 15838141 NP_298829.1 229 1497115 1497804
179575 hypothetical XF1541 hypothetical protein genbank 15838142 NP_298830.1 57 1497899 1498072
179576 hypothetical XF1542 hypothetical protein genbank 15838143 NP_298831.1 67 1498180 1498383
179577 hypothetical XF1543 hypothetical protein genbank 15838144 NP_298832.1 66 1498464 1498664
179578 hypothetical XF1544 hypothetical protein genbank 15838145 NP_298833.1 56 1498643 1498813
179579 hypothetical XF1545 molybdopterin biosynthesis protein
similar to SP|Q57097 (percent identity: 42 %/query alignment coverage: 94.9 %/subject alignment coverage: 100.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838146 NP_298834.1 276 1499121 1499951
179580 hypothetical XF1546 hypothetical protein genbank 15838147 NP_298835.1 55 1500341 1500508
179581 hypothetical XF1547 peptidoglycan-associated outer membrane lipoprotein precursor
similar to GI|79314 (percent identity: 29 %/query alignment coverage: 95.4 %/subject alignment coverage: 94.8 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838148 NP_298836.1 153 1500688 1501149
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
179582 hypothetical XF1548 dihydrolipoamide dehydrogenase
Catalyzes the oxidation of dihydrolipoamide to lipoamide
genbank 15838149 NP_298837.1 490 1502301 1503773
179583 hypothetical XF1549 dihydrolipoamide acetyltransferase
Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA
genbank 15838150 NP_298838.1 391 1504174 1505349
179584 hypothetical XF1550 oxoglutarate dehydrogenase
similar to SP|Q59106 (percent identity: 54 %/query alignment coverage: 97.6 %/subject alignment coverage: 99.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 77747553 NP_298839.2 942 1505392 1508220
179585 hypothetical XF1551 hypothetical protein genbank 15838152 NP_298840.1 87 1509079 1509342
179586 hypothetical XF1552 hypothetical protein
similar to SP|P27431 (percent identity: 37 %/query alignment coverage: 74.9 %/subject alignment coverage: 84.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838153 NP_298841.1 422 1509414 1510682
179587 hypothetical XF1553 adenylosuccinate lyase
Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
genbank 77747554 NP_298842.2 455 1510853 1512220
179588 fumC hypothetical XF1554 fumarate hydratase
class II family; tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
genbank 15838155 NP_298843.1 473 1512821 1514242
179589 hypothetical XF1555 hypothetical protein
similar to SP|P27078 (percent identity: 34 %/query alignment coverage: 49.3 %/subject alignment coverage: 39.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838156 NP_298844.1 284 1514347 1515201
179590 hypothetical XF1556 hypothetical protein genbank 15838157 NP_298845.1 51 1515231 1515386
179591 hypothetical XF1557 hypothetical protein genbank 15838158 NP_298846.1 82 1515383 1515631
179592 hypothetical XF1558 single-stranded DNA binding protein
similar to SP|P40947 (percent identity: 36 %/query alignment coverage: 120.3 %/subject alignment coverage: 57.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838159 NP_298847.1 79 1515650 1515889
179593 hypothetical XF1559 hypothetical protein genbank 15838160 NP_298848.1 115 1515919 1516266
179594 hypothetical XF1560 hypothetical protein
similar to SP|P76065 (percent identity: 29 %/query alignment coverage: 51.5 %/subject alignment coverage: 54.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838161 NP_298849.1 301 1516245 1517150
179595 hypothetical XF1561 hypothetical protein genbank 15838162 NP_298850.1 251 1518193 1518948
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
179596 hypothetical XF1562 hypothetical protein
similar to GI|1652487 (percent identity: 37 %/query alignment coverage: 98.9 %/subject alignment coverage: 64.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838163 NP_298851.1 88 1519136 1519402
179597 hypothetical XF1563 hypothetical protein genbank 15838164 NP_298852.1 112 1519389 1519727
179598 hypothetical XF1564 phage-related lysozyme
similar to SP|Q37896 (percent identity: 43 %/query alignment coverage: 70.0 %/subject alignment coverage: 54.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838165 NP_298853.1 203 1519817 1520428
179599 hypothetical XF1565 hypothetical protein genbank 15838166 NP_298854.1 109 1520421 1520750
179600 hypothetical XF1566 hypothetical protein genbank 15838167 NP_298855.1 153 1520740 1521201
179601 hypothetical XF1567 hypothetical protein genbank 15838168 NP_298856.1 77 1521182 1521415
179602 hypothetical XF1568 hypothetical protein genbank 15838169 NP_298857.1 132 1521506 1521904
179603 hypothetical XF1569 hypothetical protein genbank 15838170 NP_298858.1 316 1521888 1522838
179604 hypothetical XF1570 hypothetical protein
similar to GI|3249594 (percent identity: 29 %/query alignment coverage: 89.6 %/subject alignment coverage: 35.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838171 NP_298859.1 183 1522854 1523405
179605 hypothetical XF1571 hypothetical protein
similar to SP|P44183 (percent identity: 30 %/query alignment coverage: 92.9 %/subject alignment coverage: 99.5 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838172 NP_298860.1 467 1523387 1524790
179606 hypothetical XF1572 hypothetical protein genbank 15838173 NP_298861.1 93 1524839 1525120
179607 hypothetical XF1573 hypothetical protein
similar to GI|3192735 (percent identity: 27 %/query alignment coverage: 84.8 %/subject alignment coverage: 92.2 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838174 NP_298862.1 112 1525117 1525455
179608 hypothetical XF1574 plasmid-related protein
similar to GI|1075358 (percent identity: 34 %/query alignment coverage: 98.2 %/subject alignment coverage: 61.7 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838175 NP_298863.1 281 1525528 1526373
179609 hypothetical XF1575 hypothetical protein genbank 15838176 NP_298864.1 397 1526370 1527563
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
179610 hypothetical XF1576 hypothetical protein genbank 15838177 NP_298865.1 160 1527591 1528073
179611 hypothetical XF1577 hypothetical protein genbank 15838178 NP_298866.1 327 1528083 1529066
179612 hypothetical XF1578 hypothetical protein genbank 15838179 NP_298867.1 99 1529130 1529429
179613 hypothetical XF1579 hypothetical protein genbank 15838180 NP_298868.1 124 1529432 1529806
179614 hypothetical XF1580 hypothetical protein genbank 15838181 NP_298869.1 157 1529803 1530276
179615 hypothetical XF1581 hypothetical protein genbank 15838182 NP_298870.1 126 1530257 1530637
179616 hypothetical XF1582 hypothetical protein genbank 15838183 NP_298871.1 156 1530624 1531094
179617 hypothetical XF1583 hypothetical protein genbank 15838184 NP_298872.1 498 1531095 1532591
179618 hypothetical XF1584 hypothetical protein genbank 15838185 NP_298873.1 145 1532601 1533038
179619 hypothetical XF1585 hypothetical protein genbank 15838186 NP_298874.1 140 1533035 1533457
179620 hypothetical XF1586 hypothetical protein genbank 15838187 NP_298875.1 54 1533484 1533648
179621 hypothetical XF1587 hypothetical protein genbank 77747555 NP_298876.2 629 1533605 1535494
179622 hypothetical XF1588 hypothetical protein
hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 93
genbank 15838189 NP_298877.1 109 1535977 1536306
179623 hypothetical XF1589 plasmid stabilization protein
similar to SP|P55511 (percent identity: 50 %/query alignment coverage: 97.2 %/subject alignment coverage: 98.6 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838190 NP_298878.1 142 1536445 1536873
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
179624 hypothetical XF1590 plasmid stabilization protein
similar to SP|P55510 (percent identity: 62 %/query alignment coverage: 98.8 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838191 NP_298879.1 86 1536874 1537134
179625 hypothetical XF1591 hypothetical protein
hypothetical protein; identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: -111
genbank 15838192 NP_298880.1 256 1537240 1538010
179626 hypothetical XF1592 hypothetical protein genbank 15838193 NP_298881.1 105 1538010 1538327
179627 hypothetical XF1593 hypothetical protein genbank 15838194 NP_298882.1 276 1538324 1539154
179628 hypothetical XF1594 hypothetical protein genbank 15838195 NP_298883.1 213 1539151 1539792
179629 hypothetical XF1595 hypothetical protein genbank 15838196 NP_298884.1 117 1539789 1540142
179630 hypothetical XF1596 hypothetical protein
similar to SP|P44191 (percent identity: 40 %/query alignment coverage: 94.9 %/subject alignment coverage: 96.9 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838197 NP_298885.1 99 1540198 1540497
179631 hypothetical XF1597 hypothetical protein
similar to GI|5123491 (percent identity: 66 %/query alignment coverage: 98.0 %/subject alignment coverage: 97.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838198 NP_298886.1 98 1540494 1540790
179632 hypothetical XF1598 hypothetical protein genbank 15838199 NP_298887.1 60 1540893 1541075
179633 hypothetical XF1599 hypothetical protein genbank 15838200 NP_298888.1 76 1541057 1541287
179634 hypothetical XF1600 hypothetical protein genbank 15838201 NP_298889.1 185 1541391 1541948
179635 hypothetical XF1601 hypothetical protein genbank 15838202 NP_298890.1 325 1542079 1543056
179636 hypothetical XF1602 ABC transporter ATP-binding protein
similar to GI|4155748 (percent identity: 31 %/query alignment coverage: 78.4 %/subject alignment coverage: 97.4 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder/Start codon shift: 24
genbank 15838203 NP_298891.1 283 1543053 1543904
179637 hypothetical XF1603 hypothetical protein genbank 15838204 NP_298892.1 53 1544147 1544308
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
179638 hypothetical XF1604 ABC transporter vitamin B12 uptake permease
similar to SP|P06610 (percent identity: 44 %/query alignment coverage: 87.1 %/subject alignment coverage: 92.3 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder
genbank 15838205 NP_298893.1 194 1544674 1545258


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