Reference SNP(refSNP) Cluster Report: rs1058885

Reference SNP(refSNP) Cluster Report: rs1058885

refSNP ID: rs1058885
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	86/129
Map to Genome Build:	36.3
Citation:	PubMed

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_000757.3:c.1223T>C
NM_172210.1:c.1090+133T>C
NM_172211.1:c.545-216T>C
NM_172212.1:c.1223T>C
NP_000748.3:p.L408P
NP_757351.1:p.L408P
NT_019273.18:g.6374150T>C
NT_019273.18:g.6374151T>C

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss76883361 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1058885 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss1540807	LEE\|792104	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	09/13/00	10/10/03	86	cDNA	unknown
ss3176157	WICVAR\|WIAF-15321	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccaggccctcagcaacccctccac	06/28/01	04/07/04	98	cDNA	unknown
ss4328211	FHCRC\|ABQ_7	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	01/28/02	10/25/06	105	Genomic	unknown
ss4924762	YUSUKE\|IMS-JST084543	rev/T	A/G	gtggaggggttgctgaggccctgggggcgc	gtgatgagatcctgggagagcctggctccg	07/24/02	10/10/03	108	Genomic	unknown
ss16360973	FHCRC\|ABQ221_2316	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	01/28/04	04/07/04	120	Genomic	unknown
ss19121109	CSHL-HAPMAP\|CSHL-HuDD-200402.chr1.NT_019273.16_1462414	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	02/20/04	05/16/04	120	Genomic	unknown
ss19848867	CSHL-HAPMAP\|CSHL-HuFF-200402.chr1.NT_019273.16_1462414	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	02/21/04	03/04/04	120	Genomic	unknown
ss20565523	SSAHASNP\|WGSA-200403-chr1.chr1.NT_019273.16_1462414	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	03/18/04	03/18/04	121	Genomic	unknown
ss44026920	ABI\|hCV1806488	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	07/18/05	07/18/05	126	Genomic	unknown
ss48403777	APPLERA_GI\|hCV1806488	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	09/28/05	11/03/06	126	Genomic	unknown
ss66537281	SHGC\|393	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	11/01/06	12/16/06	127	Genomic	unknown
ss68777341	PERLEGEN\|PGP04322226	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	01/30/07	08/14/07	127	Genomic	unknown
ss69369033	PHARMGKB_PHAT\|PS203165_PA129286472_13507	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	03/22/07	08/14/07	127	Genomic	unknown
ss74892357	ILLUMINA\|ILMN_Human_1M_rs1058885	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	08/28/07	08/29/07	129	Genomic	unknown
ss76883361	SI_EXO\|NT_019273.18_6374151	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	09/20/07	09/20/07	129	Genomic	unknown
ss84357030	HGSV\|Cor19240_SNV_20070510.chr1_110178508	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	11/30/07	12/07/07	130	Genomic	unknown
ss108515733	1000GENOMES\|CEU.trio.12.15.2008_141932_chr1_110267989	fwd/B	C/T	cggagccaggctctcccaggatctcatcac	gcgcccccagggcctcagcaacccctccac	12/15/08	12/16/08	130	Genomic	unknown

Fasta sequence (Legend)

 GGTGGCTCAC CACAGCCTCG CCCCTCTGTC GGGGCCTTCA ACCCCGGGAT GGAGGATATT
 CTTGACTCTG CAATGGGCAC TAATTGGGTC CCAGAAGAAG CCTCTGGAGA GGCCAGTGAG
 ATTCCCGTAC CCCAAGGGAC AGAGCTTTCC CCCTCCAGGC CAGGAGGGGG CAGCATGCAG
 ACAGAGCCCG CCAGACCCAG CAACTTCCTC TCAGCATCTT CTCCACTCCC TGCATCAGCA
 AAGGGCCAAC AGCCGGCAGA TGTAACTGGT ACCGCCTTGC CCAGGGTGGG CCCCGTGAGG
 CCCACTGGCC AGGACTGGAA TCACACCCCC CAGAAGACAG ACCATCCATC TGCCCTGCTC
 AGAGACCCCC CGGAGCCAGG CTCTCCCAGG ATCTCATCAC
 Y
 GCGCCCCCAG GGCCTCAGCA ACCCCTCCAC CCTCTCTGCT CAGCCACAGC TTTCCAGAAG
 CCACTCCTCG GGCAGCGTGC TGCCCCTTGG GGAGCTGGAG GGCAGGAGGA GCACCAGGGA
 TCGGAGGAGC CCCGCAGAGC CAGAAGGAGG ACCAGCAAGT GAAGGGGCAG CCAGGCCCCT
 GCCCCGTTTT AACTCCGTTC CTTTGACTGA CACAGGCCAT GAGAGGCAGT CCGAGGGATC
 CTTCAGCCCG CAGCTCCAGG AGTCTGTCTT CCACCTGCTG GTGCCCAGTG TCATCCTGGT
 CTTGCTGGCC GTCGGAGGCC TCTTGTTCTA CAGGTGGAGG CGGCGGGTGA GTAGATCCCC
 ATGAGGAAGA AGAGCACGTC CCTTAGGGCA GGGGCAGAGC

GeneView

GeneView via analysis of contig annotation: CSF1 colony stimulating factor 1 (macrophage)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_019273->NM_000757

function

reference

NT_019273->NM_172210

function

reference

NT_019273->NM_172211

function

reference

NT_019273->NM_172212

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	mRNA pos	Function	dbSNP allele	Protein residue	Codon pos	Amino acid pos


reference	NT_019273->NM_000757->NP_000748	6374151	forward	1412	missense	C	Pro [P]	2	408
					contig reference	T	Leu [L]	2	408

reference	NT_019273->NM_172210->NP_757349	6374151	forward		intron

reference	NT_019273->NM_172211->NP_757350	6374151	forward		intron

reference	NT_019273->NM_172212->NP_757351	6374151	forward	1412	missense	C	Pro [P]	2	408
					contig reference	T	Leu [L]	2	408

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs1058885 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NW_001838594.1	1585240	108335934	plus	T	alt_assembly_8	HuRef	HuRef	view	300
1	NW_922462.1	1431368	108713157	plus	T	alt_assembly_1	Celera	Celera	view	300
1	NT_019273.18	6374151	110267989	plus	T	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_019273.18 Hs.173894

dbSNP Blast Analysis
NCBI RefSeq NM (mRNA):	GenBank HTGS Finished:	GenBank mRNA:
NM_000757.3 NM_172212.1	AL450468.6	AK291660.1 BC021117.1 M27087.1 M64592.1 X05825.1

UniGene Cluster ID
173894

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss16360973	POPU1		40	AF					0.375	0.625

ss19121109	CEPH		184	AF					0.410	0.590

ss3176157	MITOGPOP6	multiple	46	IG	0.087	0.174	0.739	0.100	0.174	0.826

ss4328211	POPU1		40	AF					0.250	0.750

ss44026920	HapMap-HCB	Asian	90	IG			1.000			1.000

	HapMap-JPT	Asian	88	IG			1.000			1.000

ss48403777	AGI_ASP population	multiple	72	IG	0.139	0.500	0.361	1.000	0.389	0.611

ss4924762	JBIC-allele		1494	AF					0.613	0.387

ss66537281	R24		48	AF					0.250	0.750

ss68777341	HapMap-CEU	European	120	GF		1.000			0.500	0.500

	HapMap-HCB	Asian	90	GF		1.000			0.500	0.500

	HapMap-JPT	Asian	90	GF		1.000			0.500	0.500

	HapMap-YRI	Sub-Saharan African	118	GF		1.000			0.500	0.500

ss69369033	PA129286478		64	AF					0.422	0.578

Concordant Genotype	Total Sample	C/C	C/T	T/T
ss3176157	21	2	4	15
ss44026920	1
ss48403777	38	5	18	13
ss68777341	179		178

RefSNP Genotype Summary	Total Individual	C/C	C/T	T/T
rs1058885	327	7	200	26

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
467	ss3176157	T/T	WICVAR	MITOGPOP6	CL6		06.26.01-n
467	ss68777341	C/T	CSHL-HAPMAP	HapMap-CEU	NA12006	CEPH1420.12	chr1-HapMap-CEU
536	ss3176157	T/T	WICVAR	MITOGPOP6	CL8		06.26.01-n
536	ss68777341	C/T	CSHL-HAPMAP	HapMap-CEU	NA12751	CEPH1444.14	chr1-HapMap-CEU
5148	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18526	CH18526	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5148	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18526	CH18526	chr1-HapMap-HCB
5149	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18524	CH18524	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5149	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18524	CH18524	chr1-HapMap-HCB
5150	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18529	CH18529	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5150	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18529	CH18529	chr1-HapMap-HCB
5151	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18558	CH18558	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5151	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18558	CH18558	chr1-HapMap-HCB
5152	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18532	CH18532	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5152	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18532	CH18532	chr1-HapMap-HCB
5153	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18561	CH18561	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5153	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18561	CH18561	chr1-HapMap-HCB
5154	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18562	CH18562	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5154	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18562	CH18562	chr1-HapMap-HCB
5155	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18537	CH18537	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5155	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18537	CH18537	chr1-HapMap-HCB
5156	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18603	CH18603	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5156	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18603	CH18603	chr1-HapMap-HCB
5157	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18540	CH18540	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5157	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18540	CH18540	chr1-HapMap-HCB
5158	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5158	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	chr1-HapMap-HCB
5159	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18542	CH18542	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5159	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18542	CH18542	chr1-HapMap-HCB
5160	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18545	CH18545	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5160	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18545	CH18545	chr1-HapMap-HCB
5161	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18572	CH18572	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5161	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18572	CH18572	chr1-HapMap-HCB
5162	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18547	CH18547	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5162	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18547	CH18547	chr1-HapMap-HCB
5163	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18609	CH18609	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5163	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18609	CH18609	chr1-HapMap-HCB
5164	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18550	CH18550	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5164	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18550	CH18550	chr1-HapMap-HCB
5165	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18608	CH18608	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5165	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18608	CH18608	chr1-HapMap-HCB
5166	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18552	CH18552	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5166	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18552	CH18552	chr1-HapMap-HCB
5167	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18611	CH18611	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5167	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18611	CH18611	chr1-HapMap-HCB
5168	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18555	CH18555	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5168	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18555	CH18555	chr1-HapMap-HCB
5169	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5169	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18564	CH18564	chr1-HapMap-HCB
5170	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18566	CH18566	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5170	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18566	CH18566	chr1-HapMap-HCB
5171	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18563	CH18563	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5171	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18563	CH18563	chr1-HapMap-HCB
5172	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18570	CH18570	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5172	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18570	CH18570	chr1-HapMap-HCB
5173	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18612	CH18612	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5173	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18612	CH18612	chr1-HapMap-HCB
5174	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18571	CH18571	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5174	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18571	CH18571	chr1-HapMap-HCB
5175	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18620	CH18620	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5175	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18620	CH18620	chr1-HapMap-HCB
5176	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18621	CH18621	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5176	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18621	CH18621	chr1-HapMap-HCB
5177	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18594	CH18594	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5177	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18594	CH18594	chr1-HapMap-HCB
5178	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18622	CH18622	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5178	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18622	CH18622	chr1-HapMap-HCB
5179	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18573	CH18573	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5179	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18573	CH18573	chr1-HapMap-HCB
5180	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18623	CH18623	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5180	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18623	CH18623	chr1-HapMap-HCB
5181	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18576	CH18576	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5181	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18576	CH18576	chr1-HapMap-HCB
5182	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18577	CH18577	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5182	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18577	CH18577	chr1-HapMap-HCB
5183	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18624	CH18624	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5183	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18624	CH18624	chr1-HapMap-HCB
5184	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18579	CH18579	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5184	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18579	CH18579	chr1-HapMap-HCB
5185	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18632	CH18632	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5185	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18632	CH18632	chr1-HapMap-HCB
5186	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18582	CH18582	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5186	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18582	CH18582	chr1-HapMap-HCB
5187	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18633	CH18633	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5187	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18633	CH18633	chr1-HapMap-HCB
5188	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18635	CH18635	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5188	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18635	CH18635	chr1-HapMap-HCB
5189	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18592	CH18592	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5189	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18592	CH18592	chr1-HapMap-HCB
5190	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18636	CH18636	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5190	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18636	CH18636	chr1-HapMap-HCB
5191	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18593	CH18593	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5191	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18593	CH18593	chr1-HapMap-HCB
5192	ss44026920	T/T	CSHL-HAPMAP	HapMap-HCB	NA18637	CH18637	r23_ch1_HCB_illumina:golden_gate_1.0.0	253019
5192	ss68777341	C/T	CSHL-HAPMAP	HapMap-HCB	NA18637	CH18637	chr1-HapMap-HCB
5193	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18942	JA18942	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5193	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18942	JA18942	chr1-HapMap-JPT
5194	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18940	JA18940	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5194	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18940	JA18940	chr1-HapMap-JPT
5195	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18951	JA18951	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5195	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18951	JA18951	chr1-HapMap-JPT
5196	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18943	JA18943	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5196	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18943	JA18943	chr1-HapMap-JPT
5197	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18947	JA18947	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5197	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18947	JA18947	chr1-HapMap-JPT
5198	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18944	JA18944	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5198	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18944	JA18944	chr1-HapMap-JPT
5199	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18945	JA18945	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5199	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18945	JA18945	chr1-HapMap-JPT
5200	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18949	JA18949	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5200	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18949	JA18949	chr1-HapMap-JPT
5201	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18948	JA18948	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5201	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18948	JA18948	chr1-HapMap-JPT
5202	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18952	JA18952	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5202	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18952	JA18952	chr1-HapMap-JPT
5203	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18956	JA18956	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5203	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18956	JA18956	chr1-HapMap-JPT
5204	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18964	JA18964	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5204	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18964	JA18964	chr1-HapMap-JPT
5205	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18953	JA18953	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5205	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18953	JA18953	chr1-HapMap-JPT
5206	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18968	JA18968	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5206	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18968	JA18968	chr1-HapMap-JPT
5207	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18959	JA18959	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5207	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18959	JA18959	chr1-HapMap-JPT
5208	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18969	JA18969	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5208	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18969	JA18969	chr1-HapMap-JPT
5209	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18960	JA18960	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5209	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18960	JA18960	chr1-HapMap-JPT
5210	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18961	JA18961	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5210	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18961	JA18961	chr1-HapMap-JPT
5211	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18972	JA18972	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5211	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18972	JA18972	chr1-HapMap-JPT
5212	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5212	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	chr1-HapMap-JPT
5213	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18973	JA18973	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5213	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18973	JA18973	chr1-HapMap-JPT
5214	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18966	JA18966	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5214	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18966	JA18966	chr1-HapMap-JPT
5215	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18975	JA18975	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5215	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18975	JA18975	chr1-HapMap-JPT
5216	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18967	JA18967	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5216	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18967	JA18967	chr1-HapMap-JPT
5217	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18976	JA18976	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5217	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18976	JA18976	chr1-HapMap-JPT
5218	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18978	JA18978	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5218	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18978	JA18978	chr1-HapMap-JPT
5219	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18970	JA18970	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5219	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18970	JA18970	chr1-HapMap-JPT
5220	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18980	JA18980	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5220	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18980	JA18980	chr1-HapMap-JPT
5221	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18995	JA18995	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5221	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18995	JA18995	chr1-HapMap-JPT
5222	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18981	JA18981	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5222	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18981	JA18981	chr1-HapMap-JPT
5223	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18971	JA18971	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5223	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18971	JA18971	chr1-HapMap-JPT
5224	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18974	JA18974	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5224	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18974	JA18974	chr1-HapMap-JPT
5225	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18987	JA18987	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5225	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18987	JA18987	chr1-HapMap-JPT
5226	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18990	JA18990	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5226	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18990	JA18990	chr1-HapMap-JPT
5227	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18991	JA18991	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5227	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18991	JA18991	chr1-HapMap-JPT
5228	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18994	JA18994	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5228	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18994	JA18994	chr1-HapMap-JPT
5229	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5229	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	chr1-HapMap-JPT
5230	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18997	JA18997	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5230	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18997	JA18997	chr1-HapMap-JPT
5231	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18998	JA18998	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5231	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18998	JA18998	chr1-HapMap-JPT
5232	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA19000	JA19000	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5232	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA19000	JA19000	chr1-HapMap-JPT
5233	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA19005	JA19005	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5233	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA19005	JA19005	chr1-HapMap-JPT
5234	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA18999	JA18999	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5234	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA18999	JA18999	chr1-HapMap-JPT
5235	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA19007	JA19007	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5235	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA19007	JA19007	chr1-HapMap-JPT
5236	ss44026920	T/T	CSHL-HAPMAP	HapMap-JPT	NA19003	JA19003	r23_ch1_JPT_illumina:golden_gate_1.0.0	253019
5236	ss68777341	C/T	CSHL-HAPMAP	HapMap-JPT	NA19003	JA19003	chr1-HapMap-JPT

Genotype data submitted for	331	samples from	327	individuals	Individual with multiple genotypes submission:	94

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

YES

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Revised: May 25, 2006 1:38 PM .